Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9164602 .. 9165474

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAACCCAATCAAAGGACGGAGACTCTCTGGAGAAGCGGCCCGGCATCTTCTTCCTCGGCTCCCCCGGCGTCGTCGAACGCTCTCTCATTTCCCAGGCCCTCCCAATGTATGAGCAGTTGGCTGCCTTGATCTTGGTTTTCGACACAACTGAGTTGTCGTCTCTGTCTGCGCTTAAGAAATGGGTATCTCAAACTGATCTTCAAAAGTTCGATATACTAGTATGCGTAGGGAATAAGGTTGATCGTGTTCCGGGTCACCCGGTTCATGCCGAATATAGAAGACGACTGCAGAAGCTTGGAGACCCGTTTGCTGATGCCGGTCCAGGGTTCACTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

6.07

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	16, 327
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	96, 325
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	18, 168, 297
AoxI	GGCC	2 cut(s)	41, 99
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	42, 100, 323
AsuC2I	CCSGG	4 cut(s)	45, 69, 255, 263
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	98, 327
BcnI	CCSGG	4 cut(s)	45, 69, 255, 263
BcoDI	GTCTC	3 cut(s)	18, 168, 297
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	41, 126
BlsI	GCNGC	2 cut(s)	42, 127
Bme1390I	CCNGG	6 cut(s)	45, 69, 98, 255, 263, 327
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	42, 100, 323
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	6 cut(s)	45, 69, 98, 255, 263, 327
BmsI	GCATC	2 cut(s)	57, 307
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	4 cut(s)	45, 69, 255, 263
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	58, 67, 96, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 327
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	98, 327
BseDI	CCNNGG	4 cut(s)	58, 67, 96, 326
BseLI	CCNNNNNNNGG	2 cut(s)	16, 327
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	43, 101
BsiSI	CCGG	5 cut(s)	45, 69, 254, 263, 321
BslI	CCNNNNNNNGG	2 cut(s)	16, 327
BsmAI	GTCTC	3 cut(s)	18, 168, 297
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	43, 101
Bso31I	GGTCTC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	132, 199, 244
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	2 cut(s)	43, 101
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	4 cut(s)	58, 67, 96, 326
BssMI	GATC	3 cut(s)	132, 199, 244
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	98, 327
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	135, 202, 247
BstMAI	GTCTC	3 cut(s)	18, 168, 297
BstMBI	GATC	3 cut(s)	132, 199, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	98, 327
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	6 cut(s)	43, 67, 96, 253, 261, 325
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	43, 101
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	42, 100, 323
CseI	GACGC	1 cut(s)	61
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	5 cut(s)	43, 63, 101, 125, 298
CviKI_1	RGCY	5 cut(s)	43, 63, 101, 125, 298
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	134, 201, 246
DpnII	GATC	3 cut(s)	132, 199, 244
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	96, 325
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	1 cut(s)	272
FaiI	YATR	5 cut(s)	114, 218, 226, 270, 279
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	41, 126
Fsp4HI	GCNGC	2 cut(s)	41, 126
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	41, 126
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	43, 101
HapII	CCGG	5 cut(s)	45, 69, 254, 263, 321
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	5 cut(s)	45, 69, 254, 263, 321
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	77, 80
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	132, 199, 244
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	17, 58, 82, 83, 110, 267, 276, 312, 334
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	57, 307
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	134, 201, 246
MboI	GATC	3 cut(s)	132, 199, 244
MboII	GAAGA	4 cut(s)	43, 46, 194, 294
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	2 cut(s)	68, 113
MseI	TTAA	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	5 cut(s)	45, 69, 254, 263, 321
MspR9I	CCNGG	6 cut(s)	45, 69, 98, 255, 263, 327
MvaI	CCWGG	2 cut(s)	98, 327
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	4 cut(s)	45, 69, 255, 263
NdeII	GATC	3 cut(s)	132, 199, 244
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	42, 127
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	96, 325
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	96, 325
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	42, 100, 323
PstI	CTGCAG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	41, 126
Sau3AI	GATC	3 cut(s)	132, 199, 244
Sau96I	GGNCC	3 cut(s)	42, 100, 323
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	6 cut(s)	45, 69, 98, 255, 263, 327
SetI	ASST	2 cut(s)	243, 300
SfaNI	GCATC	2 cut(s)	57, 307
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	6 cut(s)	43, 67, 96, 253, 261, 325
TaqI	TCGA	3 cut(s)	78, 144, 213
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	323
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.