Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008658

Physical Location & Seq

Genomic Coordinates Forward (+)

9126057 .. 9132094

Gene Structure 6038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGACTCTCTGGAGAAGCGGCCCGGCATCTTCTTCCTCGGCTCCCCCGGCGTCGTCAAACGCTCTCTCATTTCCCCTGGTAGTTGATGGAAATAGATGGAATATCTCTACAAATTACTACACAGCTGGTGTTTCGGTATGGTTGGTTCATCTCCATGACGAATTTTTTATAGAGTCCCTCCCAATGTATGAGCAGTTGGCTGCCTTGATCTTGGTTTTCGACACAACTGAGTTGTCGTCTCTGTCTGCGCTTCAGGAATGGGTATCTCAAACTGATCTTCAAAAGTTCGATATACTAGTATGCGTAGGGAATAAGGTTGATCGTGTTCCGGGTCACCCGGTTCGTGCCGAATATAGAAGACGACTGCAGAAGCTTGGAGACCCGTTTGCTGATGCCGGTCCAGGGTTCACTGCGTATGGAATCTCCGAGACTGAAGGAAGCAGTTTATTGGGGGATGACGAGCCATTTTGGGGGGCTAGCCACACATGTTTGGAATGGTGCACTGAGCATAACATTGAGTTCGTTGAAGCTTGCGCTTCAAATACTGATTTTGACAAATGTTTGTCAGTTGATGGCGACTCGCAAGGTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006895 GO:0006897 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022411 GO:0022607 GO:0030139 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0036010 GO:0036257 GO:0036258 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048308 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061709 GO:0061912 GO:0061919 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098657 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_binding Ras

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

4.39

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65960
fragaria_vesca	FvH4_1g10130
malus_domestica	MD02G1109300.v1.1 MD02G1111600.v1.1 MD02G1112100.v1.1 MD02G1112300.v1.1 MD02G1112600.v1.1 MD02G1113000.v1.1 MD02G1113100.v1.1 MD15G1228500.v1.1
prunus_persica	Prupe.7G185600_v2.0.a1
pyrus_communis	pycom15g20360
rosa_chinensis	RchiOBHm_Chr2g0096901
rosa_laevigata	RLG00000016681
rosa_multiflora	Rmu_co8386225.1_g000001 Rmu_ssc0000215.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145170
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh2AG109700 Rh2BG111600 Rh2CG113700 Rh2DG112800
rosa_wichuraiana	Rw2G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	239, 456
AcyI	GRCGYC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	405, 473
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	284, 530, 543, 596
AhlI	ACTAGT	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	78, 403
AluBI	AGCT	3 cut(s)	128, 376, 533
AluI	AGCT	3 cut(s)	128, 376, 533
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	3 cut(s)	246, 375, 425
Alw44I	GTGCAC	1 cut(s)	502
AoxI	GGCC	1 cut(s)	22
ApaLI	GTGCAC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	253, 539
AspS9I	GGNCC	2 cut(s)	23, 401
AsuC2I	CCSGG	4 cut(s)	26, 50, 333, 341
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	83, 93, 569
BciT130I	CCWGG	2 cut(s)	80, 405
BcnI	CCSGG	4 cut(s)	26, 50, 333, 341
BcoDI	GTCTC	3 cut(s)	246, 375, 425
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	2 cut(s)	299, 480
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	22, 204
BlsI	GCNGC	2 cut(s)	23, 205
Bme1390I	CCNGG	6 cut(s)	26, 50, 80, 333, 341, 405
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	23, 401
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	6 cut(s)	26, 50, 80, 333, 341, 405
BmsI	GCATC	2 cut(s)	38, 385
BmtI	GCTAGC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	4 cut(s)	26, 50, 333, 341
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	4 cut(s)	39, 48, 78, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 473
Bse118I	RCCGGY	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	80, 405
BseDI	CCNNGG	4 cut(s)	39, 48, 78, 404
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	405, 473
BseMII	CTCAG	2 cut(s)	222, 498
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	5 cut(s)	26, 50, 332, 341, 399
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	405, 473
BsmAI	GTCTC	3 cut(s)	246, 375, 425
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	3 cut(s)	210, 277, 322
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	223, 499
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	372
BspOI	GCTAGC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	4 cut(s)	39, 48, 78, 404
BssMI	GATC	3 cut(s)	210, 277, 322
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	80, 405
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	481, 535
BstDEI	CTNAG	2 cut(s)	231, 507
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	253, 539
BstKTI	GATC	3 cut(s)	213, 280, 325
BstMAI	GTCTC	3 cut(s)	246, 375, 425
BstMBI	GATC	3 cut(s)	210, 277, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	80, 405
BstNSI	RCATGY	1 cut(s)	492
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	6 cut(s)	24, 48, 78, 331, 339, 403
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 504
Cac8I	GCNNGC	2 cut(s)	481, 535
CfoI	GCGC	2 cut(s)	253, 539
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	23, 401
CseI	GACGC	1 cut(s)	42
CviAII	CATG	2 cut(s)	158, 489
CviJI	RGCY	9 cut(s)	24, 44, 128, 203, 376, 466, 479, 483, 533
CviKI_1	RGCY	9 cut(s)	24, 44, 128, 203, 376, 466, 479, 483, 533
DdeI	CTNAG	2 cut(s)	231, 507
DpnI	GATC	3 cut(s)	212, 279, 324
DpnII	GATC	3 cut(s)	210, 277, 322
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	239, 456
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	78, 403
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	2 cut(s)	161, 492
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	157, 488
Fnu4HI	GCNGC	2 cut(s)	22, 204
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	22, 204
FspBI	CTAG	2 cut(s)	299, 480
GlaI	GCGC	2 cut(s)	252, 538
GluI	GCNGC	2 cut(s)	22, 204
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	5 cut(s)	26, 50, 332, 341, 399
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	253, 539
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	161, 492
Hin6I	GCGC	2 cut(s)	251, 537
HinP1I	GCGC	2 cut(s)	251, 537
HindIII	AAGCTT	2 cut(s)	374, 531
HinfI	GANTC	4 cut(s)	7, 176, 423, 581
HpaII	CCGG	5 cut(s)	26, 50, 332, 341, 399
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	411, 504
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	13, 257
Hpy8I	GTNNAC	2 cut(s)	411, 504
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	370, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	231, 507
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	161, 492
HspAI	GCGC	2 cut(s)	251, 537
Kzo9I	GATC	3 cut(s)	210, 277, 322
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	38, 385
MaeI	CTAG	2 cut(s)	299, 480
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	212, 279, 324
MboI	GATC	3 cut(s)	210, 277, 322
MboII	GAAGA	4 cut(s)	24, 27, 272, 372
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	2 cut(s)	115, 164
MlyI	GAGTC	2 cut(s)	185, 575
MnlI	CCTC	2 cut(s)	49, 191
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	5 cut(s)	26, 50, 332, 341, 399
MspR9I	CCNGG	6 cut(s)	26, 50, 80, 333, 341, 405
MvaI	CCWGG	2 cut(s)	80, 405
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	4 cut(s)	26, 50, 333, 341
NdeII	GATC	3 cut(s)	210, 277, 322
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	161, 492
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	492
PciI	ACATGT	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	23, 205
PleI	GAGTC	2 cut(s)	184, 575
PpsI	GAGTC	2 cut(s)	184, 575
PscI	ACATGT	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	78, 403
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	78, 403
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	23, 401
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
PstI	CTGCAG	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	156
SatI	GCNGC	2 cut(s)	22, 204
Sau3AI	GATC	3 cut(s)	210, 277, 322
Sau96I	GGNCC	2 cut(s)	23, 401
SchI	GAGTC	2 cut(s)	185, 575
ScrFI	CCNGG	6 cut(s)	26, 50, 80, 333, 341, 405
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	5 cut(s)	130, 321, 378, 535, 592
SfaNI	GCATC	2 cut(s)	38, 385
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	2 cut(s)	115, 164
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	299, 480
StyD4I	CCNGG	6 cut(s)	24, 48, 78, 331, 339, 403
TaqI	TCGA	2 cut(s)	222, 291
TasI	AATT	2 cut(s)	115, 164
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	423
TscAI	CASTG	2 cut(s)	418, 511
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	418, 511
VneI	GTGCAC	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	2 cut(s)	299, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.