Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

6214195 .. 6214958

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11392.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATGAGCATAGAAACCCCAGAAAAAACGTGTGCCTTCTACACTCTTCCACATTTGGAAACTCACACGTGTCAAACATCTATAGCCGCACATACTTGGGGTTTTGCGGCGCATGCATATACTGGTGGATCTATATCTTGCAGCCTATTCTTGCCTTTTGAGAGCATCTCAAACTTGCCAATGGGTTTTCTCAGCAAAATCTCCGAGCTCCATGATAGGGCTCGCAGTCGTGAAAAGCTCAAGAAGAACAAGCAATTACAGACGGTGGAGATAAAAGTGAAGATAGACTGCGAAGGCTGCGAGAGAAGAGTGAAGAAATCGGTGGAAGGCATGAAGGGAGTGACTAGTGTTGAAGTGGATCCCAAGCAAAGCAAGCTCACTGTTATTGGCTACGTGGACCCCAATAAGCTGCTGCATCGTGTTAGGCATCGAACGGGGAAGAAAGCTGATCTCTGGCCGTATATACCGTACGACGTCGTTGAGCATCCATACGCCCCTGTGGCTTATGACAGGAAGGCACCACCAGGGTACGTGAAGAACGTTCTGGCTGACCCTGAAGCTGCTACTCTCGCACGTGCCAGCTCCACCGAGGTCAGGTATACGACGGCGTTTAGCGACGAAAATCCAAATGCTTGTGTGCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

216

Amino Acids

24.04

Weight (kDa)

8.81

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	92 - 147	4.1e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	2 cut(s)	87, 107
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	3 cut(s)	136, 353, 366
AcoI	YGGCCR	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	2 cut(s)	69, 575
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	470, 530
AfiI	CCNNNNNNNGG	2 cut(s)	217, 594
AflIII	ACRYGT	3 cut(s)	29, 66, 68
AgsI	TTSAA	1 cut(s)	353
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	7 cut(s)	208, 238, 376, 409, 446, 560, 582
AluI	AGCT	7 cut(s)	208, 238, 376, 409, 446, 560, 582
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	3 cut(s)	136, 353, 366
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	5 cut(s)	141, 297, 409, 412, 560
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	210, 223
BbrPI	CACGTG	2 cut(s)	69, 575
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	5 cut(s)	153, 284, 396, 399, 547
BceAI	ACGGC	2 cut(s)	442, 621
BciT130I	CCWGG	1 cut(s)	525
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	7 cut(s)	87, 108, 142, 298, 410, 413, 561
BlsI	GCNGC	7 cut(s)	88, 109, 143, 299, 411, 414, 562
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	360, 399, 519
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	4 cut(s)	174, 424, 436, 493
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	1 cut(s)	224
BsaAI	YACGTR	4 cut(s)	69, 394, 532, 575
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	524, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 594
Bse1I	ACTGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	524, 588
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	217, 594
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	5 cut(s)	153, 284, 396, 399, 547
BshFI	GGCC	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	217, 594
BsnI	GGCC	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	210, 223
Bsp143I	GATC	3 cut(s)	128, 358, 448
BspACI	CCGC	2 cut(s)	87, 107
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	360, 399, 519
BspPI	GGATC	3 cut(s)	136, 353, 366
BspT107I	GGYRCC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	524, 588
BssMI	GATC	3 cut(s)	128, 358, 448
BssNAI	GTATAC	1 cut(s)	600
BssNI	GRCGYC	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	265, 382, 468
Bst6I	CTCTTC	2 cut(s)	51, 301
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	4 cut(s)	69, 394, 532, 575
BstC8I	GCNNGC	4 cut(s)	114, 223, 374, 580
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	131, 361, 451
BstMBI	GATC	3 cut(s)	128, 358, 448
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 297, 373, 500, 569
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	153, 284, 396, 399, 547
BstX2I	RGATCY	2 cut(s)	128, 358
BstYI	RGATCY	2 cut(s)	128, 358
BstZ17I	GTATAC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	114, 223, 374, 580
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	469, 529
CviAII	CATG	3 cut(s)	113, 212, 331
CviQI	GTAC	2 cut(s)	469, 529
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	130, 360, 450
DpnII	GATC	3 cut(s)	128, 358, 448
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	51, 301
EarI	CTCTTC	2 cut(s)	51, 301
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 223
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	2 cut(s)	69, 575
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	210, 223
FaeI	CATG	3 cut(s)	116, 215, 334
FatI	CATG	3 cut(s)	112, 211, 330
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	7 cut(s)	87, 108, 142, 298, 410, 413, 561
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	2 cut(s)	210, 223
Fsp4HI	GCNGC	7 cut(s)	87, 108, 142, 298, 410, 413, 561
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	7 cut(s)	87, 108, 142, 298, 410, 413, 561
HaeIII	GGCC	1 cut(s)	457
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	116, 215, 334
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	397, 600
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	230, 241
Hpy8I	GTNNAC	2 cut(s)	397, 600
Hpy99I	CGWCG	4 cut(s)	476, 479, 607, 620
HpyAV	CCTTC	5 cut(s)	46, 287, 320, 328, 508
HpyCH4III	ACNGT	3 cut(s)	265, 382, 468
HpyCH4IV	ACGT	7 cut(s)	29, 68, 393, 474, 531, 540, 574
HpyCH4V	TGCA	3 cut(s)	116, 141, 415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 297, 373, 500, 569
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	7 cut(s)	29, 68, 393, 474, 531, 540, 574
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	116, 215, 334
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	128, 358, 448
LmnI	GCTCC	2 cut(s)	213, 587
Lsp1109I	GCAGC	5 cut(s)	153, 284, 396, 399, 547
LweI	GCATC	4 cut(s)	174, 424, 436, 493
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	7 cut(s)	29, 68, 393, 474, 531, 540, 574
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	3 cut(s)	130, 360, 450
MboI	GATC	3 cut(s)	128, 358, 448
MboII	GAAGA	7 cut(s)	38, 256, 292, 318, 325, 451, 547
MflI	RGATCY	2 cut(s)	128, 358
MhlI	GDGCHC	2 cut(s)	210, 223
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	1 cut(s)	583
Mph1103I	ATGCAT	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	5 cut(s)	113, 297, 373, 500, 569
NdeII	GATC	3 cut(s)	128, 358, 448
NlaIII	CATG	3 cut(s)	116, 215, 334
NlaIV	GGNNCC	3 cut(s)	360, 399, 519
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	7 cut(s)	88, 109, 143, 299, 411, 414, 562
PmaCI	CACGTG	2 cut(s)	69, 575
PmlI	CACGTG	2 cut(s)	69, 575
Ppu21I	YACGTR	4 cut(s)	69, 394, 532, 575
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	523
PspCI	CACGTG	2 cut(s)	69, 575
PspGI	CCWGG	1 cut(s)	523
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	360, 399, 519
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	128, 358
RsaI	GTAC	2 cut(s)	470, 530
RsaNI	GTAC	2 cut(s)	469, 529
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	7 cut(s)	87, 108, 142, 298, 410, 413, 561
Sau3AI	GATC	3 cut(s)	128, 358, 448
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	2 cut(s)	210, 223
SfaNI	GCATC	4 cut(s)	174, 424, 436, 493
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	87, 107
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	265, 382, 468
TaiI	ACGT	7 cut(s)	32, 71, 396, 477, 534, 543, 577
TaqI	TCGA	1 cut(s)	430
TasI	AATT	1 cut(s)	254
TauI	GCSGC	2 cut(s)	89, 110
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	5 cut(s)	141, 297, 409, 412, 560
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	599
XspI	CTAG	1 cut(s)	345
ZraI	GACGTC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.