Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

10894051 .. 10895855

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTTTTCTCAGTAAAGTCTCCGAGCTCCGTGCTAGGGCTCGGAGTCATAAAAAGCTCAAGAAGAACAAGCAGCTACAGACAGTGGAGATAAAAGTGAAGATGGACTGCGAAGGTTGCGAGAGAAGAGTGAAGAAATCAGTGGAAGGAATGAAAGGAGTCACGAGTGTTGAAGTGGAACCTAAGCAAAGCAAGCTCACTGTTATTGGCTATGTGGACCCCAACAAGGTGTTGCATCGTGTCAGGCATCGAACGGGGAAGAAGGCGGATCTGTGGCCGTATGTACCATACGACGTCGTCGACCATTCATGGGCTCCCGGGGCTTACGATAGGAAGGCACCACCTGGGTACGTGAGGAACGTGCTGAATGACCCTGACCCTCAGGCTTCTGCTCTCGCACGCGCCAACTCCACCGAGGTGAAGTATACGACGGCGTTTAGTGACGAAAATCCAAATGCTTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

9.66

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	32 - 87	5.1e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	2 cut(s)	300, 425
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	285, 350
AfiI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	343
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	28, 58, 76, 196
AluI	AGCT	4 cut(s)	28, 58, 76, 196
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	318, 319
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	3 cut(s)	30, 43, 316
BauI	CACGAG	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	2 cut(s)	262, 447
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	318, 319
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	3 cut(s)	318, 319, 345
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	4 cut(s)	180, 219, 315, 339
BmrFI	CCNGG	3 cut(s)	318, 319, 345
BmsI	GCATC	2 cut(s)	244, 256
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	318, 319
BsaAI	YACGTR	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	317, 318, 344, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 226, 310
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	317, 318, 344, 414
BseLI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
BseMII	CTCAG	2 cut(s)	25, 395
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	3 cut(s)	30, 43, 316
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	24, 394
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	4 cut(s)	180, 219, 315, 339
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	317, 318, 344, 414
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	85, 202
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	194, 400
BstDEI	CTNAG	3 cut(s)	11, 183, 381
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	316, 317, 343
BstSFI	CTRYAG	1 cut(s)	77
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	90, 147, 198
Cac8I	GCNNGC	2 cut(s)	194, 400
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	217
Cfr9I	CCCGGG	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	284, 349
CviAII	CATG	1 cut(s)	309
CviQI	GTAC	2 cut(s)	284, 349
DdeI	CTNAG	3 cut(s)	11, 183, 381
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	3 cut(s)	30, 43, 316
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	343
EcoT38I	GRGCYC	3 cut(s)	30, 43, 316
FaeI	CATG	1 cut(s)	312
FaiI	YATR	7 cut(s)	51, 213, 282, 289, 310, 426, 470
FatI	CATG	1 cut(s)	308
FblI	GTMKAC	2 cut(s)	300, 425
Fnu4HI	GCNGC	1 cut(s)	74
FriOI	GRGCYC	3 cut(s)	30, 43, 316
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	46, 159
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	217, 301, 426
Hpy188I	TCNGA	2 cut(s)	25, 45
Hpy188III	TCNNGA	2 cut(s)	61, 163
Hpy8I	GTNNAC	3 cut(s)	217, 301, 426
Hpy99I	CGWCG	4 cut(s)	296, 299, 302, 433
HpyAV	CCTTC	4 cut(s)	107, 140, 256, 328
HpyCH4III	ACNGT	2 cut(s)	85, 202
HpyCH4IV	ACGT	3 cut(s)	294, 351, 360
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
HpyF3I	CTNAG	3 cut(s)	11, 183, 381
HpySE526I	ACGT	3 cut(s)	294, 351, 360
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	33, 319
LpnPI	CCDG	6 cut(s)	229, 330, 331, 357, 368, 387
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	244, 256
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	3 cut(s)	294, 351, 360
MaeIII	GTNAC	2 cut(s)	160, 440
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	76, 112, 138, 145, 271
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	3 cut(s)	30, 43, 316
MlyI	GAGTC	2 cut(s)	55, 168
MnlI	CCTC	3 cut(s)	348, 390, 409
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	318, 319, 345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
NciI	CCSGG	2 cut(s)	318, 319
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	4 cut(s)	180, 219, 315, 339
NmuCI	GTSAC	2 cut(s)	160, 440
OliI	CACNNNNGTG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 357
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	2 cut(s)	54, 167
PpsI	GAGTC	2 cut(s)	54, 167
Ppu21I	YACGTR	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	180, 219, 315, 339
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	285, 350
RsaNI	GTAC	2 cut(s)	284, 349
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	299
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	55, 168
ScrFI	CCNGG	3 cut(s)	318, 319, 345
SduI	GDGCHC	3 cut(s)	30, 43, 316
SfaNI	GCATC	2 cut(s)	244, 256
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	217
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	316, 317, 343
TaaI	ACNGT	2 cut(s)	85, 202
TaiI	ACGT	3 cut(s)	297, 354, 363
TaqI	TCGA	2 cut(s)	250, 300
TscAI	CASTG	3 cut(s)	90, 147, 205
TseFI	GTSAC	2 cut(s)	160, 440
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	160, 440
TspDTI	ATGAA	2 cut(s)	167, 297
TspGWI	ACGGA	1 cut(s)	20
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	3 cut(s)	90, 147, 205
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	300, 425
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.