Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000577.1

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

6383 .. 6754

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000577.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggactgcgaaggttgcgagagaagagtgaagaaatcagtggaaggcatgaaaggagtcacgagtgttgaagtggaacctaagcaaagcaagctcactgttattggctatgtggaccccaacaaggtgttgcattgtgtcaggcatcgaacggggaagaaggcggatctgtggccgaaggcaccacctgggtacgtgaggaacgtgctgaatgaccctgaccctcaggcctatgttctcgcacgtgccaactccaccgaggtgaagtatacgacgacgtttagtgatgaaaatccaaatgcttgtgtggttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

105

Amino Acids

11.69

Weight (kDa)

8.7

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	173, 228
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	78, 117, 183
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	81
BsaAI	YACGTR	2 cut(s)	196, 245
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	188, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	188, 258
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	175, 230
BshNI	GGYRCC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	2 cut(s)	175, 230
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	175, 230
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	78, 117, 183
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	188, 258
BssMI	GATC	1 cut(s)	166
BssNAI	GTATAC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	61
Bst1107I	GTATAC	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	2 cut(s)	196, 245
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	81, 225
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 91
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	175, 230
BtsIMutI	CAGTG	2 cut(s)	45, 96
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	94, 108, 175, 230
CviKI_1	RGCY	4 cut(s)	94, 108, 175, 230
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	81, 225
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 111, 234, 270, 314
FatI	CATG	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	175, 230
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	115, 270
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	115, 270
Hpy99I	CGWCG	2 cut(s)	277, 280
HpyAV	CCTTC	4 cut(s)	5, 38, 154, 172
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	4 cut(s)	195, 204, 244, 278
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 91
HpyF3I	CTNAG	2 cut(s)	81, 225
HpySE526I	ACGT	4 cut(s)	195, 204, 244, 278
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	127, 174, 201, 212, 231
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	4 cut(s)	195, 204, 244, 278
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	36, 43, 169
MflI	RGATCY	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	192, 234, 253
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	15, 91
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	3 cut(s)	78, 117, 183
NmuCI	GTSAC	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	2 cut(s)	196, 245
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	78, 117, 183
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	4 cut(s)	198, 207, 247, 281
TaqI	TCGA	1 cut(s)	148
TscAI	CASTG	2 cut(s)	45, 103
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	65, 303
TspRI	CASTG	2 cut(s)	45, 103
VpaK11BI	GGWCC	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.