Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009833.1

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

67982 .. 68353

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009833.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggactgcgaaggttgcgagagaagagtgaagaaatcagtggaaggcatgaaaggagtcacgagtgttgaagtggaacctaagcaaagcaagctcactgttattggctatgtggaccccaacaaggtgttgcatcgtgtcaggcatcgaccagggaagaaggcggatctatggccgtatgtaccatacgacgtcgtcgaccatccatgggctcccggggcttacgataggaaggcaccacctgggtacgtgaggaacgtgctgaatgaccctgaccctcaggcttctgctctcgcacgtgccaactccaccgaggtgaagtatacgacggcgtttagtgacaaaaatccaaatgcttgtgtggttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

8.99

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	198, 323
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	183, 248
AfiI	CCNNNNNNNGG	2 cut(s)	124, 208
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	151, 241
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	216, 217
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	299
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	2 cut(s)	160, 345
BciT130I	CCWGG	2 cut(s)	153, 243
BcnI	CCSGG	2 cut(s)	216, 217
Bme1390I	CCNGG	4 cut(s)	153, 216, 217, 243
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	4 cut(s)	78, 117, 213, 237
BmrFI	CCNGG	4 cut(s)	153, 216, 217, 243
BmsI	GCATC	2 cut(s)	142, 154
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	216, 217
BsaAI	YACGTR	2 cut(s)	250, 299
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	6 cut(s)	152, 206, 215, 216, 242, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 208
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	153, 243
BseDI	CCNNGG	6 cut(s)	152, 206, 215, 216, 242, 312
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	124, 208
BseMII	CTCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	124, 208
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	78, 117, 213, 237
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	235
BssECI	CCNNGG	6 cut(s)	152, 206, 215, 216, 242, 312
BssMI	GATC	1 cut(s)	166
BssNAI	GTATAC	1 cut(s)	324
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	153, 243
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	2 cut(s)	250, 299
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	81, 279
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 91, 218
BstNI	CCWGG	2 cut(s)	153, 243
BstSCI	CCNGG	4 cut(s)	151, 214, 215, 241
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	45, 96
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	182, 247
CviAII	CATG	2 cut(s)	49, 207
CviJI	RGCY	6 cut(s)	94, 108, 175, 212, 221, 284
CviKI_1	RGCY	6 cut(s)	94, 108, 175, 212, 221, 284
CviQI	GTAC	2 cut(s)	182, 247
DdeI	CTNAG	2 cut(s)	81, 279
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	151, 241
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	2 cut(s)	52, 210
FaiI	YATR	8 cut(s)	50, 111, 172, 180, 187, 208, 324, 368
FatI	CATG	2 cut(s)	48, 206
FblI	GTMKAC	2 cut(s)	198, 323
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	52, 210
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	115, 199, 324
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	115, 199, 324
Hpy99I	CGWCG	4 cut(s)	194, 197, 200, 331
HpyAV	CCTTC	4 cut(s)	5, 38, 154, 226
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	4 cut(s)	192, 249, 258, 298
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 91, 218
HpyF3I	CTNAG	2 cut(s)	81, 279
HpySE526I	ACGT	4 cut(s)	192, 249, 258, 298
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	52, 210
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	127, 138, 165, 228, 229, 255, 266, 285
LweI	GCATC	2 cut(s)	142, 154
MaeII	ACGT	4 cut(s)	192, 249, 258, 298
MaeIII	GTNAC	2 cut(s)	58, 338
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	36, 43, 169
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	246, 288, 307
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	4 cut(s)	153, 216, 217, 243
MvaI	CCWGG	2 cut(s)	153, 243
MwoI	GCNNNNNNNGC	3 cut(s)	15, 91, 218
NciI	CCSGG	2 cut(s)	216, 217
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	52, 210
NlaIV	GGNNCC	4 cut(s)	78, 117, 213, 237
NmuCI	GTSAC	2 cut(s)	58, 338
OliI	CACNNNNGTG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 255
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	2 cut(s)	250, 299
Psp6I	CCWGG	2 cut(s)	151, 241
PspCI	CACGTG	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	151, 241
PspN4I	GGNNCC	4 cut(s)	78, 117, 213, 237
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	183, 248
RsaNI	GTAC	2 cut(s)	182, 247
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	4 cut(s)	153, 216, 217, 243
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	142, 154
SinI	GGWCC	1 cut(s)	115
SmaI	CCCGGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	314
SsiI	CCGC	1 cut(s)	164
StyD4I	CCNGG	4 cut(s)	151, 214, 215, 241
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	4 cut(s)	195, 252, 261, 301
TaqI	TCGA	2 cut(s)	148, 198
TscAI	CASTG	2 cut(s)	45, 103
TseFI	GTSAC	2 cut(s)	58, 338
Tsp45I	GTSAC	2 cut(s)	58, 338
TspDTI	ATGAA	1 cut(s)	65
TspMI	CCCGGG	1 cut(s)	215
TspRI	CASTG	2 cut(s)	45, 103
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	198, 323
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.