Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Reverse (-)

11689507 .. 11690938

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAATATTTTCAATCTCCATCGCCCCAAGCCCGAGTGGTCCGTCGGCCTTTGTCAATGCTTCAACGATATCCCTACATGTTGCATAACATGCCTTGTCCCATGTATCACCTTCGGCCGAATTGCAGAAATTGTGGATGAAGGGCAAACTTCATGCTTTAACCAAGGCTGCGTCTACGGTTTGTTGATGATGGTGCAATTTCAATGGCTCTATTCGTGCATCTATAGAGAGAAAATGCGCAAAAAGTTCAGTTTGCCGGAACAACCTTGTTGTGATTGTTGCGTTCATTTCTGCTGCGAATTATGTGCCCTTTGTCAAGAGCATGCCGAGCTCAAAGCTAGAGGCTTTGATCCCTCCATCGGTTGGACTGGGCAACCAAATGCTGTTCCAAAGATGCATTTCTCGATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

138

Amino Acids

15.84

Weight (kDa)

6.84

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	13 - 110	1.3e-31	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	359, 363
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	13, 64, 203
AluBI	AGCT	2 cut(s)	331, 338
AluI	AGCT	2 cut(s)	331, 338
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	46, 115
ApeKI	GCWGC	2 cut(s)	168, 294
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	155, 281
BccI	CCATC	3 cut(s)	27, 184, 365
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	223
BisI	GCNGC	2 cut(s)	169, 295
BlsI	GCNGC	2 cut(s)	170, 296
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	228, 384
BmuI	ACTGGG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 363
Bse1I	ACTGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	359, 363
BseNI	ACTGG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	310
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	155, 281
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	48, 117
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	359, 363
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	48, 117
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	310, 333
Bsp143I	GATC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	48, 117
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 328
BstNSI	RCATGY	3 cut(s)	81, 93, 326
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	155, 281
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	48, 117
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	160
CviAII	CATG	5 cut(s)	78, 90, 102, 153, 323
CviJI	RGCY	8 cut(s)	31, 48, 117, 168, 208, 331, 338, 345
CviKI_1	RGCY	8 cut(s)	31, 48, 117, 168, 208, 331, 338, 345
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DraI	TTTAAA	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	331
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	5 cut(s)	81, 93, 105, 156, 326
FaiI	YATR	8 cut(s)	79, 86, 91, 103, 154, 225, 304, 324
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	77, 89, 101, 152, 322
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	169, 295
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	169, 295
FspBI	CTAG	1 cut(s)	339
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	169, 295
HaeIII	GGCC	2 cut(s)	48, 117
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	81, 93, 105, 156, 326
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	317, 403
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	121, 134
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	84, 125, 196, 219, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 328
Hsp92II	CATG	5 cut(s)	81, 93, 105, 156, 326
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	2 cut(s)	270, 354
Lsp1109I	GCAGC	2 cut(s)	155, 281
LweI	GCATC	2 cut(s)	228, 384
MaeI	CTAG	1 cut(s)	339
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	310, 333
MluCI	AATT	4 cut(s)	120, 129, 197, 299
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	2 cut(s)	335, 364
Mph1103I	ATGCAT	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	159, 411
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	90, 328
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	5 cut(s)	81, 93, 105, 156, 326
NmeAIII	GCCGAG	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	3 cut(s)	81, 93, 326
PaeI	GCATGC	1 cut(s)	326
PciI	ACATGT	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	170, 296
PscI	ACATGT	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	159, 411
SatI	GCNGC	2 cut(s)	169, 295
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	310, 333
SetI	ASST	4 cut(s)	113, 268, 333, 340
SfaNI	GCATC	2 cut(s)	228, 384
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	39
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	4 cut(s)	120, 129, 197, 299
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	404
TasI	AATT	4 cut(s)	120, 129, 197, 299
Tru1I	TTAA	2 cut(s)	159, 411
Tru9I	TTAA	2 cut(s)	159, 411
TseI	GCWGC	2 cut(s)	168, 294
TspDTI	ATGAA	4 cut(s)	17, 141, 153, 275
TspGWI	ACGGA	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	39
XceI	RCATGY	3 cut(s)	81, 93, 326
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.