Rh5AG453800

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004026
Physical Location & Seq
Forward (+)
77687752 .. 77690640
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG453800.1

Sequence Viewer

Length: 528 bp
ATGGTCTATATCTTGCAGCCAAATCTTGCTTTTTTTGGGAGTATCTCAAGCTTGCCAATGGGTTTTCTCAGTAAAGTCTCCGAGCTCCGTGCTAGGGCTCGGAGTCATAAAAAGCTCAAGAACAAGCAGCTACAGACTGTGGAGATAAAAGTGAAGATGGACTGCGAAGGTTGCGAGAGAAGAGTGAAGAAATCAGTGGAAGGCATGAAAGGAGTCACAAGTGTTGAAGTGGATCCCAAGCAAAGCAAGCTCACTGTTATTGGCTATGTGGACCCCAACAAGGTGTTGCATCGTGTCAGGCATCGAACGGGGAAGAAGGCGGATCTGTGGCCGTATGTACCATACGACGTCGTCGAGCATCCATGGGCTCCCGGGGCTTATGATAGGAAGGCACCACCTGGGTACGTGAGGAACGTGCTGAATGACCCTGACCCTCAGGCTTCTGCTCTCGCACGTGCCAACTCCACCGAGGTGAAGTATACGACGGCGTTTAGTGACGAAAATCCAAATGCTTGTGTGATTATGTAG

Protein Analysis

175

Amino Acids

19.64

Weight (kDa)

9.58

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 50 - 105 7.1e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 479
AciI CCGC 1 cut(s) 320
AclWI GGATC 3 cut(s) 227, 240, 330
AcoI YGGCCR 1 cut(s) 329
AcvI CACGTG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 2 cut(s) 339, 404
AfiI CCNNNNNNNGG 2 cut(s) 94, 280
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 397
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 5 cut(s) 51, 85, 115, 130, 250
AluI AGCT 5 cut(s) 51, 85, 115, 130, 250
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 3 cut(s) 227, 240, 330
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 16, 127
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 435
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 3 cut(s) 87, 100, 370
BbrPI CACGTG 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 28, 139
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 316, 501
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 399
BcnI CCSGG 2 cut(s) 372, 373
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 17, 128
BlsI GCNGC 2 cut(s) 18, 129
Bme1390I CCNGG 3 cut(s) 372, 373, 399
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 4 cut(s) 234, 273, 369, 393
BmrFI CCNGG 3 cut(s) 372, 373, 399
BmsI GCATC 3 cut(s) 298, 310, 367
BpuEI CTTGAG 2 cut(s) 31, 101
BpuMI CCSGG 2 cut(s) 372, 373
BsaAI YACGTR 2 cut(s) 406, 455
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 5 cut(s) 362, 371, 372, 398, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 280
Bse21I CCTNAGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 5 cut(s) 362, 371, 372, 398, 468
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 94, 280
BseMII CTCAG 2 cut(s) 82, 449
BseXI GCAGC 2 cut(s) 28, 139
BshFI GGCC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 94, 280
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 3 cut(s) 87, 100, 370
Bsp143I GATC 2 cut(s) 232, 322
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 81, 448
BspLI GGNNCC 4 cut(s) 234, 273, 369, 393
BspPI GGATC 3 cut(s) 227, 240, 330
BspT107I GGYRCC 1 cut(s) 391
BssECI CCNNGG 5 cut(s) 362, 371, 372, 398, 468
BssMI GATC 2 cut(s) 232, 322
BssNAI GTATAC 1 cut(s) 480
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 362
Bst1107I GTATAC 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 139, 256
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 348
BstBAI YACGTR 2 cut(s) 406, 455
BstC8I GCNNGC 2 cut(s) 53, 248
BstDEI CTNAG 2 cut(s) 68, 435
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 2 cut(s) 235, 325
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 232, 322
BstMWI GCNNNNNNNGC 3 cut(s) 171, 247, 374
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 3 cut(s) 370, 371, 397
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 28, 139
BstX2I RGATCY 2 cut(s) 232, 322
BstYI RGATCY 2 cut(s) 232, 322
BstZ17I GTATAC 1 cut(s) 480
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 201, 252
Cac8I GCNNGC 2 cut(s) 53, 248
Cfr13I GGNCC 1 cut(s) 271
Cfr9I CCCGGG 1 cut(s) 371
Csp6I GTAC 2 cut(s) 338, 403
CviAII CATG 2 cut(s) 205, 363
CviQI GTAC 2 cut(s) 338, 403
DdeI CTNAG 2 cut(s) 68, 435
DpnI GATC 2 cut(s) 234, 324
DpnII GATC 2 cut(s) 232, 322
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 362
Eco24I GRGCYC 3 cut(s) 87, 100, 370
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 85
Eco72I CACGTG 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 362
EcoT38I GRGCYC 3 cut(s) 87, 100, 370
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 208, 366
FatI CATG 2 cut(s) 204, 362
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 17, 128
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 3 cut(s) 87, 100, 370
Fsp4HI GCNGC 2 cut(s) 17, 128
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 17, 128
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 2 cut(s) 208, 366
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 2 cut(s) 103, 213
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 2 cut(s) 271, 480
Hpy188I TCNGA 2 cut(s) 82, 102
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 271, 480
Hpy99I CGWCG 4 cut(s) 350, 353, 356, 487
HpyAV CCTTC 4 cut(s) 161, 194, 310, 382
HpyCH4III ACNGT 2 cut(s) 139, 256
HpyCH4IV ACGT 4 cut(s) 348, 405, 414, 454
HpyCH4V TGCA 2 cut(s) 16, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 247, 374
HpyF3I CTNAG 2 cut(s) 68, 435
HpySE526I ACGT 4 cut(s) 348, 405, 414, 454
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 2 cut(s) 208, 366
Kzo9I GATC 2 cut(s) 232, 322
LmnI GCTCC 2 cut(s) 90, 373
LpnPI CCDG 6 cut(s) 283, 384, 385, 411, 422, 441
Lsp1109I GCAGC 2 cut(s) 28, 139
LweI GCATC 3 cut(s) 298, 310, 367
MaeI CTAG 1 cut(s) 93
MaeII ACGT 4 cut(s) 348, 405, 414, 454
MaeIII GTNAC 2 cut(s) 214, 494
MalI GATC 2 cut(s) 234, 324
MboI GATC 2 cut(s) 232, 322
MboII GAAGA 4 cut(s) 166, 192, 199, 325
MflI RGATCY 2 cut(s) 232, 322
MhlI GDGCHC 3 cut(s) 87, 100, 370
MlyI GAGTC 2 cut(s) 112, 222
MnlI CCTC 3 cut(s) 402, 444, 463
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 372, 373, 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 171, 247, 374
NciI CCSGG 2 cut(s) 372, 373
NcoI CCATGG 1 cut(s) 362
NdeII GATC 2 cut(s) 232, 322
NlaIII CATG 2 cut(s) 208, 366
NlaIV GGNNCC 4 cut(s) 234, 273, 369, 393
NmuCI GTSAC 2 cut(s) 214, 494
OliI CACNNNNGTG 1 cut(s) 470
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 411
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 18, 129
PleI GAGTC 2 cut(s) 111, 221
PmaCI CACGTG 1 cut(s) 455
PmlI CACGTG 1 cut(s) 455
PpsI GAGTC 2 cut(s) 111, 221
Ppu21I YACGTR 2 cut(s) 406, 455
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 397
PspCI CACGTG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 4 cut(s) 234, 273, 369, 393
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 2 cut(s) 232, 322
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 2 cut(s) 339, 404
RsaNI GTAC 2 cut(s) 338, 403
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 2 cut(s) 17, 128
Sau3AI GATC 2 cut(s) 232, 322
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 112, 222
ScrFI CCNGG 3 cut(s) 372, 373, 399
SduI GDGCHC 3 cut(s) 87, 100, 370
SfaNI GCATC 3 cut(s) 298, 310, 367
SfcI CTRYAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 271
SmaI CCCGGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 46, 116
SmoI CTYRAG 2 cut(s) 46, 116
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 370, 371, 397
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 139, 256
TaiI ACGT 4 cut(s) 351, 408, 417, 457
TaqI TCGA 2 cut(s) 304, 354
TscAI CASTG 2 cut(s) 201, 259
TseFI GTSAC 2 cut(s) 214, 494
TseI GCWGC 2 cut(s) 16, 127
Tsp45I GTSAC 2 cut(s) 214, 494
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 77
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 2 cut(s) 201, 259
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 479
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.