Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

10931898 .. 10932221

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAGGAGTCACGAGTGTTGAAGTGGAACCTAAGCAAAGCAAGCTCACTGTTATTGGCTATGTGGACCCCAACAAGGTGTTGCATCGTGTCAGGCATCGAACGGGGAAGAAGGCGGATCTGTGGCCGTATGTACCATACGACGTCGTCAACCATCCATGGGCTCCCGGGGCTTACGATAGGAAGGCACCACCTGGGTACGTGAGGAACGTGCTGAATGACCCTGATCCTCAGGCTTCTGCTCTCGCACGTGCCAACTCCACCGAGGTGAAGTATACGACGGCGTTTAGTGACGAAAATCCAAATGCTTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

107

Amino Acids

11.91

Weight (kDa)

9.07

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	126, 221
AcoI	YGGCCR	1 cut(s)	125
AcvI	CACGTG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	135, 200
AfiI	CCNNNNNNNGG	2 cut(s)	76, 160
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	193
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AlwI	GGATC	2 cut(s)	126, 221
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	2 cut(s)	168, 169
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	13
BbrPI	CACGTG	1 cut(s)	251
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	112, 297
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	2 cut(s)	168, 169
Bme1390I	CCNGG	3 cut(s)	168, 169, 195
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	4 cut(s)	30, 69, 165, 189
BmrFI	CCNGG	3 cut(s)	168, 169, 195
BmsI	GCATC	2 cut(s)	94, 106
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	168, 169
BsaAI	YACGTR	2 cut(s)	202, 251
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	5 cut(s)	158, 167, 168, 194, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 160
Bse21I	CCTNAGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	5 cut(s)	158, 167, 168, 194, 264
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	76, 160
BseMII	CTCAG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	76, 160
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	118, 226
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	4 cut(s)	30, 69, 165, 189
BspPI	GGATC	2 cut(s)	126, 221
BspT107I	GGYRCC	1 cut(s)	187
BssECI	CCNNGG	5 cut(s)	158, 167, 168, 194, 264
BssMI	GATC	2 cut(s)	118, 226
BssNAI	GTATAC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	158
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	2 cut(s)	202, 251
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	33, 231
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	121, 229
BstMBI	GATC	2 cut(s)	118, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 170
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	3 cut(s)	166, 167, 193
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	67
Cfr9I	CCCGGG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	134, 199
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	6 cut(s)	46, 60, 127, 164, 173, 236
CviKI_1	RGCY	6 cut(s)	46, 60, 127, 164, 173, 236
CviQI	GTAC	2 cut(s)	134, 199
DdeI	CTNAG	2 cut(s)	33, 231
DpnI	GATC	2 cut(s)	120, 228
DpnII	GATC	2 cut(s)	118, 226
EaeI	YGGCCR	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	162
FaiI	YATR	6 cut(s)	63, 132, 139, 160, 276, 320
FatI	CATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	275
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	67, 151, 276
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	3 cut(s)	67, 151, 276
Hpy99I	CGWCG	3 cut(s)	146, 149, 283
HpyAV	CCTTC	2 cut(s)	106, 178
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	144, 201, 210, 250
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 170
HpyF3I	CTNAG	2 cut(s)	33, 231
HpySE526I	ACGT	4 cut(s)	144, 201, 210, 250
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	118, 226
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	79, 180, 181, 207, 218, 237
LweI	GCATC	2 cut(s)	94, 106
MaeII	ACGT	4 cut(s)	144, 201, 210, 250
MaeIII	GTNAC	2 cut(s)	10, 290
MalI	GATC	2 cut(s)	120, 228
MboI	GATC	2 cut(s)	118, 226
MboII	GAAGA	1 cut(s)	121
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	198, 240, 259
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	3 cut(s)	168, 169, 195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	43, 170
NciI	CCSGG	2 cut(s)	168, 169
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	118, 226
NlaIII	CATG	1 cut(s)	162
NlaIV	GGNNCC	4 cut(s)	30, 69, 165, 189
NmuCI	GTSAC	2 cut(s)	10, 290
OliI	CACNNNNGTG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	17
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	2 cut(s)	202, 251
Psp6I	CCWGG	1 cut(s)	193
PspCI	CACGTG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	30, 69, 165, 189
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	135, 200
RsaNI	GTAC	2 cut(s)	134, 199
RseI	CAYNNNNRTG	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	118, 226
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	168, 169, 195
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	9 cut(s)	34, 48, 81, 147, 196, 204, 213, 253, 270
SfaNI	GCATC	2 cut(s)	94, 106
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	266
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	166, 167, 193
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	4 cut(s)	147, 204, 213, 253
TaqI	TCGA	1 cut(s)	100
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	10, 290
Tsp45I	GTSAC	2 cut(s)	10, 290
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	275
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.