Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Reverse (-)

17321223 .. 17322186

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCTTCTGAGTAAAGTCTATGAGCTTTGTGACTGCTCTCACAGTCATGAGAGGCTAAAGAAAAACAAGCAATTACAGACGGTGGAGATCAAAGTGAGGATGGACTGTGAAGGGTGTGAGAGAATAGTGAAGAAATCAGTGCAAGGCATGAAGGGAGTCACACAGGTTGAGGTGGACCGCAAGCTGAGCAAGCTCACCGTGATTGGCTATGTGGACCCCAACAAGGTATTGCATCGTGTCAGGCATCGGACGGGGAAGAAGGCTGATTTATGGCCCTATGTACCGTACGATGTTGTTCCGCATCCGTATGCTCCGGAGGCTTATGACAGGAAGGCCCCACCTGGGTACGTGCGGAACGTCCTGGAGGATCCGGTGGCCTCGGCTATCGCACGTGCCAGCTCCACTGAAGTGAAGTATACGACGGCGTTTAGCGACGACAACCCAAATGCATGTGTGGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

9.05

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	3 cut(s)	181, 302, 355
AclWI	GGATC	2 cut(s)	365, 378
AcuI	CTGAAG	1 cut(s)	429
AcvI	CACGTG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	285, 290, 350
AfiI	CCNNNNNNNGG	2 cut(s)	226, 345
AjnI	CCWGG	2 cut(s)	343, 363
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	4 cut(s)	28, 187, 196, 402
AluI	AGCT	4 cut(s)	28, 187, 196, 402
AlwI	GGATC	2 cut(s)	365, 378
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	3 cut(s)	275, 336, 378
AspS9I	GGNCC	4 cut(s)	178, 217, 276, 337
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	178, 217
BamHI	GGATCC	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	395
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	2 cut(s)	345, 365
BlpI	GCTNAGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	345, 365
Bme18I	GGWCC	2 cut(s)	178, 217
BmgT120I	GGNCC	4 cut(s)	178, 217, 276, 337
BmiI	GGNNCC	3 cut(s)	219, 339, 372
BmrFI	CCNGG	2 cut(s)	345, 365
BmsI	GCATC	3 cut(s)	244, 256, 313
BpmI	CTGGAG	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	188
BsaAI	YACGTR	2 cut(s)	352, 395
BsaJI	CCNNGG	2 cut(s)	344, 381
BsaWI	WCCGGW	2 cut(s)	316, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 345
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	345, 365
BseDI	CCNNGG	2 cut(s)	344, 381
BseGI	GGATG	2 cut(s)	108, 304
BseLI	CCNNNNNNNGG	2 cut(s)	226, 345
BseMII	CTCAG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	277, 338, 380
BsiSI	CCGG	2 cut(s)	317, 374
BsiWI	CGTACG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	226, 345
BsnI	GGCC	3 cut(s)	277, 338, 380
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	90, 370
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	3 cut(s)	181, 302, 355
BspANI	GGCC	3 cut(s)	277, 338, 380
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	219, 339, 372
BspPI	GGATC	2 cut(s)	365, 378
BssECI	CCNNGG	2 cut(s)	344, 381
BssMI	GATC	2 cut(s)	90, 370
BssNAI	GTATAC	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	345, 365
Bst4CI	ACNGT	5 cut(s)	47, 85, 110, 202, 288
BstBAI	YACGTR	2 cut(s)	352, 395
BstC8I	GCNNGC	3 cut(s)	185, 194, 400
BstDEI	CTNAG	2 cut(s)	11, 188
BstF5I	GGATG	2 cut(s)	108, 304
BstKTI	GATC	2 cut(s)	93, 373
BstMBI	GATC	2 cut(s)	90, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 193, 320
BstNI	CCWGG	2 cut(s)	345, 365
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	343, 363
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	277, 338, 380
BtsCI	GGATG	2 cut(s)	108, 304
BtsIMutI	CAGTG	2 cut(s)	147, 405
Cac8I	GCNNGC	3 cut(s)	185, 194, 400
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	4 cut(s)	178, 217, 276, 337
Csp6I	GTAC	3 cut(s)	284, 289, 349
CviAII	CATG	4 cut(s)	50, 151, 453, 463
CviQI	GTAC	3 cut(s)	284, 289, 349
DdeI	CTNAG	2 cut(s)	11, 188
DpnI	GATC	2 cut(s)	92, 372
DpnII	GATC	2 cut(s)	90, 370
Eco47I	GGWCC	2 cut(s)	178, 217
Eco57I	CTGAAG	1 cut(s)	429
Eco72I	CACGTG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	343, 363
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	4 cut(s)	53, 154, 456, 466
FatI	CATG	4 cut(s)	49, 150, 452, 462
FblI	GTMKAC	1 cut(s)	419
FokI	GGATG	2 cut(s)	115, 291
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	277, 338, 380
HapII	CCGG	2 cut(s)	317, 374
Hin1II	CATG	4 cut(s)	53, 154, 456, 466
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	317, 374
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	178, 217, 420
Hpy188I	TCNGA	2 cut(s)	12, 252
Hpy188III	TCNNGA	2 cut(s)	50, 317
Hpy8I	GTNNAC	3 cut(s)	178, 217, 420
Hpy99I	CGWCG	2 cut(s)	427, 440
HpyAV	CCTTC	4 cut(s)	107, 148, 256, 328
HpyCH4III	ACNGT	5 cut(s)	47, 85, 110, 202, 288
HpyCH4IV	ACGT	3 cut(s)	351, 360, 394
HpyCH4V	TGCA	3 cut(s)	145, 235, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 193, 320
HpyF3I	CTNAG	2 cut(s)	11, 188
HpySE526I	ACGT	3 cut(s)	351, 360, 394
Hsp92II	CATG	4 cut(s)	53, 154, 456, 466
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	90, 370
LmnI	GCTCC	2 cut(s)	319, 407
LweI	GCATC	3 cut(s)	244, 256, 313
MaeII	ACGT	3 cut(s)	351, 360, 394
MaeIII	GTNAC	2 cut(s)	32, 160
MalI	GATC	2 cut(s)	92, 372
MboI	GATC	2 cut(s)	90, 370
MboII	GAAGA	2 cut(s)	145, 271
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	48, 93, 166, 313, 361, 391
Mph1103I	ATGCAT	1 cut(s)	454
MroI	TCCGGA	1 cut(s)	316
MslI	CAYNNNNRTG	3 cut(s)	48, 309, 410
MspI	CCGG	2 cut(s)	317, 374
MspR9I	CCNGG	2 cut(s)	345, 365
MvaI	CCWGG	2 cut(s)	345, 365
MwoI	GCNNNNNNNGC	3 cut(s)	189, 193, 320
NdeII	GATC	2 cut(s)	90, 370
NlaIII	CATG	4 cut(s)	53, 154, 456, 466
NlaIV	GGNNCC	3 cut(s)	219, 339, 372
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	2 cut(s)	32, 160
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
Pfl23II	CGTACG	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	363
PleI	GAGTC	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	2 cut(s)	352, 395
Psp6I	CCWGG	2 cut(s)	343, 363
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	343, 363
PspLI	CGTACG	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	219, 339, 372
PspPI	GGNCC	4 cut(s)	178, 217, 276, 337
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	3 cut(s)	285, 290, 350
RsaNI	GTAC	3 cut(s)	284, 289, 349
RseI	CAYNNNNRTG	3 cut(s)	48, 309, 410
Sau3AI	GATC	2 cut(s)	90, 370
Sau96I	GGNCC	4 cut(s)	178, 217, 276, 337
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	345, 365
SfaNI	GCATC	3 cut(s)	244, 256, 313
SinI	GGWCC	2 cut(s)	178, 217
SmiMI	CAYNNNNRTG	3 cut(s)	48, 309, 410
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	3 cut(s)	181, 302, 355
StyD4I	CCNGG	2 cut(s)	343, 363
TaaI	ACNGT	5 cut(s)	47, 85, 110, 202, 288
TaiI	ACGT	3 cut(s)	354, 363, 397
TasI	AATT	1 cut(s)	74
TscAI	CASTG	2 cut(s)	147, 412
TseFI	GTSAC	2 cut(s)	32, 160
Tsp45I	GTSAC	2 cut(s)	32, 160
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	147, 412
VpaK11BI	GGWCC	2 cut(s)	178, 217
XceI	RCATGY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.