Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Forward (+)

9750368 .. 9751035

Gene Structure 668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTTATATCTTGCAGCCAAATCTTGCTTTTTTTGGGAGTATCTCAAGCTTGCCAACGGGTTTTCTCAGTAAAGTCTCCGAACTCCGCGCTAGGGCTCGGAGTCATAAAAAGCTCAAGAAGAACAAGCAGCTACATACTGTGGAGATAAAAGTGAAGATGGACTGCGAAGGTTGCGAGAGAAGAGTGAAGAAATCAGTGGAAGGCATGAAAGGAGTCACGAGTGTTGAAGTGGAACCTAAGCAAAGCAAGCTCACTGTTATTGGCTATGTGGACCCCAACAAGGTGTTGCATCGTGTCAGGCATCGACCAGGGAAGAAGGCGGATCTATGGCCGTATGTACCATACGACGTCGTCGACCATCCATGGGCTCCCGGGGCTTACGATAGGAAGGCACCACCTGGGTACGTGAGGAACGTGCTGAATGACCCTGACCCTCAGGCTTCTGCTCTCGCACGTGCCAACTCCACCGAGGTGAAGTATACGACGGCGTTTAGTGACAAAAATCCAAATGCTTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

9.75

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	51 - 100	1.3e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	394
AccI	GTMKAC	2 cut(s)	357, 482
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	88, 323
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	342, 407
AfiI	CCNNNNNNNGG	3 cut(s)	94, 283, 367
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	310, 400
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	51, 115, 133, 253
AluI	AGCT	4 cut(s)	51, 115, 133, 253
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	16, 130
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	2 cut(s)	375, 376
AsuHPI	GGTGA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	100, 373
BauI	CACGAG	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	28, 142
BccI	CCATC	2 cut(s)	154, 369
BceAI	ACGGC	2 cut(s)	319, 504
BciT130I	CCWGG	2 cut(s)	312, 402
BcnI	CCSGG	2 cut(s)	375, 376
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	2 cut(s)	17, 131
BlsI	GCNGC	2 cut(s)	18, 132
Bme1390I	CCNGG	4 cut(s)	312, 375, 376, 402
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	4 cut(s)	237, 276, 372, 396
BmrFI	CCNGG	4 cut(s)	312, 375, 376, 402
BmsI	GCATC	2 cut(s)	301, 313
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	31, 101
BpuMI	CCSGG	2 cut(s)	375, 376
BsaAI	YACGTR	2 cut(s)	409, 458
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	6 cut(s)	311, 365, 374, 375, 401, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 283, 367
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	312, 402
BseDI	CCNNGG	6 cut(s)	311, 365, 374, 375, 401, 471
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	3 cut(s)	94, 283, 367
BseMII	CTCAG	2 cut(s)	82, 452
BseXI	GCAGC	2 cut(s)	28, 142
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	3 cut(s)	94, 283, 367
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	100, 373
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	2 cut(s)	88, 323
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	81, 451
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	237, 276, 372, 396
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	394
BssECI	CCNNGG	6 cut(s)	311, 365, 374, 375, 401, 471
BssMI	GATC	1 cut(s)	325
BssNAI	GTATAC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	312, 402
Bst4CI	ACNGT	2 cut(s)	142, 259
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	2 cut(s)	409, 458
BstC8I	GCNNGC	2 cut(s)	53, 251
BstDEI	CTNAG	3 cut(s)	68, 240, 438
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 250, 377
BstNI	CCWGG	2 cut(s)	312, 402
BstSCI	CCNGG	4 cut(s)	310, 373, 374, 400
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	28, 142
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	204, 255
Cac8I	GCNNGC	2 cut(s)	53, 251
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	274
Cfr9I	CCCGGG	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	341, 406
CviAII	CATG	2 cut(s)	208, 366
CviQI	GTAC	2 cut(s)	341, 406
DdeI	CTNAG	3 cut(s)	68, 240, 438
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	100, 373
Eco47I	GGWCC	1 cut(s)	274
Eco72I	CACGTG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	310, 400
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	100, 373
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	211, 369
FatI	CATG	2 cut(s)	207, 365
FblI	GTMKAC	2 cut(s)	357, 482
Fnu4HI	GCNGC	2 cut(s)	17, 131
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	2 cut(s)	100, 373
Fsp4HI	GCNGC	2 cut(s)	17, 131
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	17, 131
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	211, 369
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	103, 216
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	3 cut(s)	274, 358, 483
Hpy188I	TCNGA	2 cut(s)	82, 102
Hpy188III	TCNNGA	2 cut(s)	118, 220
Hpy8I	GTNNAC	3 cut(s)	274, 358, 483
Hpy99I	CGWCG	4 cut(s)	353, 356, 359, 490
HpyAV	CCTTC	4 cut(s)	164, 197, 313, 385
HpyCH4III	ACNGT	2 cut(s)	142, 259
HpyCH4IV	ACGT	4 cut(s)	351, 408, 417, 457
HpyCH4V	TGCA	2 cut(s)	16, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 250, 377
HpyF3I	CTNAG	3 cut(s)	68, 240, 438
HpySE526I	ACGT	4 cut(s)	351, 408, 417, 457
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	211, 369
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	8 cut(s)	286, 297, 324, 387, 388, 414, 425, 444
Lsp1109I	GCAGC	2 cut(s)	28, 142
LweI	GCATC	2 cut(s)	301, 313
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	4 cut(s)	351, 408, 417, 457
MaeIII	GTNAC	2 cut(s)	217, 497
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	5 cut(s)	133, 169, 195, 202, 328
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	100, 373
MlyI	GAGTC	2 cut(s)	112, 225
MnlI	CCTC	3 cut(s)	405, 447, 466
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	4 cut(s)	312, 375, 376, 402
MvaI	CCWGG	2 cut(s)	312, 402
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	174, 250, 377
NciI	CCSGG	2 cut(s)	375, 376
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	211, 369
NlaIV	GGNNCC	4 cut(s)	237, 276, 372, 396
NmuCI	GTSAC	2 cut(s)	217, 497
OliI	CACNNNNGTG	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 414
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	18, 132
PleI	GAGTC	2 cut(s)	111, 224
PmaCI	CACGTG	1 cut(s)	458
PmlI	CACGTG	1 cut(s)	458
PpsI	GAGTC	2 cut(s)	111, 224
Ppu21I	YACGTR	2 cut(s)	409, 458
Psp6I	CCWGG	2 cut(s)	310, 400
PspCI	CACGTG	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	310, 400
PspN4I	GGNNCC	4 cut(s)	237, 276, 372, 396
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	2 cut(s)	342, 407
RsaNI	GTAC	2 cut(s)	341, 406
RseI	CAYNNNNRTG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	356
SatI	GCNGC	2 cut(s)	17, 131
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	112, 225
ScrFI	CCNGG	4 cut(s)	312, 375, 376, 402
SduI	GDGCHC	2 cut(s)	100, 373
SfaNI	GCATC	2 cut(s)	301, 313
SinI	GGWCC	1 cut(s)	274
SmaI	CCCGGG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	46, 116
SmoI	CTYRAG	2 cut(s)	46, 116
SsiI	CCGC	2 cut(s)	88, 323
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	310, 373, 374, 400
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	142, 259
TaiI	ACGT	4 cut(s)	354, 411, 420, 460
TaqI	TCGA	2 cut(s)	307, 357
TscAI	CASTG	2 cut(s)	204, 262
TseFI	GTSAC	2 cut(s)	217, 497
TseI	GCWGC	2 cut(s)	16, 130
Tsp45I	GTSAC	2 cut(s)	217, 497
TspDTI	ATGAA	1 cut(s)	224
TspMI	CCCGGG	1 cut(s)	374
TspRI	CASTG	2 cut(s)	204, 262
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	274
XmaI	CCCGGG	1 cut(s)	374
XmiI	GTMKAC	2 cut(s)	357, 482
XspI	CTAG	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.