Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004026

Physical Location & Seq

Genomic Coordinates Reverse (-)

81533742 .. 81534547

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTTTTCTCAGTAGAGTCTCCGAGCTCCGTGCTAGGGCTCGGAGTCATAAAAAGCTCAAGAAGAACAAGCAGCTACAGACTGTGGAGATAAAAGTGAAGATGGACTGCGAAGGTTGCGAGAGAAGAGTGAAGAAATCGGTGGAAGGCATGAAAGGAGTCACAAGTGTTGAAGTGGATCCTAAGCAAAGCAAGCTCACTGTTATTGGCTATGTGGACCCCAACAAGGTGTTGCATCGTGTCAGGCATCGAACGGGGAAGAAGGCGGATCTGTGGCCGTATGTACCATACGACGTCGTTGACCATCCATGGGCTCCTGGGGCTTACGATAGGAAGGCACCACCTGGGTACGTGAGGAACGTGCTGAATGACCCTGACCCTCAGGCTTCTGCTCTCGCACGTGCCAACTCCACCGAGGTGAAATATACGACGGCGTTTAGTGACGAAAATCCAAATGCTTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0016020 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

9.68

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	32 - 87	6.7e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66110 AT5G66110 AT5G66110
fragaria_vesca	FvH4_1g11392
malus_domestica	MD02G1126800.v1.1
prunus_persica	Prupe.7G172000_v2.0.a1
pyrus_communis	pycom02g09890
rosa_chinensis	RchiOBHm_Chr2g0098951 RchiOBHm_Chr5g0069201
rosa_laevigata	RLG00000016836 RLG00000036046
rosa_multiflora	Rmu_sc0000577.1_g000003 Rmu_sc0000936.1_g000020 Rmu_sc0009833.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011610 Rroxscaffold_2G00143550
rosa_rugosa	Rorug04G0076300 Rorug05G0396900 Rorug05G0396900
rosa_samantha	Rh2AG124700 Rh2BG127900 Rh2CG128800 Rh2DG129000 Rh4BG139100 Rh4DG136000 Rh5AG453800 Rh5BG472700 Rh5CG495300 Rh5DG485100
rosa_wichuraiana	Rw0G006000 Rw2G009570 Rw4G011560 Rw5G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	3 cut(s)	173, 186, 276
AcoI	YGGCCR	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	285, 350
AfiI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	316, 343
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	28, 58, 76, 196
AluI	AGCT	4 cut(s)	28, 58, 76, 196
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	173, 186, 276
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	3 cut(s)	30, 43, 316
BbrPI	CACGTG	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	97, 312
BceAI	ACGGC	2 cut(s)	262, 447
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	2 cut(s)	318, 345
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	318, 345
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	4 cut(s)	180, 219, 315, 339
BmrFI	CCNGG	2 cut(s)	318, 345
BmsI	GCATC	2 cut(s)	244, 256
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	2 cut(s)	352, 401
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	308, 317, 344, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 226, 310
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	318, 345
BseDI	CCNNGG	4 cut(s)	308, 317, 344, 414
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
BseMII	CTCAG	2 cut(s)	25, 395
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	37, 226, 310
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	30, 43, 316
Bsp143I	GATC	2 cut(s)	178, 268
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	24, 394
BspLI	GGNNCC	4 cut(s)	180, 219, 315, 339
BspPI	GGATC	3 cut(s)	173, 186, 276
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	308, 317, 344, 414
BssMI	GATC	2 cut(s)	178, 268
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	318, 345
Bst4CI	ACNGT	2 cut(s)	85, 202
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	2 cut(s)	352, 401
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	11, 183, 381
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	181, 271
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	178, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
BstNI	CCWGG	2 cut(s)	318, 345
BstSCI	CCNGG	2 cut(s)	316, 343
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	2 cut(s)	178, 268
BstYI	RGATCY	2 cut(s)	178, 268
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	284, 349
CviAII	CATG	2 cut(s)	151, 309
CviQI	GTAC	2 cut(s)	284, 349
DdeI	CTNAG	3 cut(s)	11, 183, 381
DpnI	GATC	2 cut(s)	180, 270
DpnII	GATC	2 cut(s)	178, 268
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	3 cut(s)	30, 43, 316
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	28
Eco72I	CACGTG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	316, 343
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	3 cut(s)	30, 43, 316
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	154, 312
FaiI	YATR	8 cut(s)	51, 152, 213, 282, 289, 310, 426, 470
FatI	CATG	2 cut(s)	150, 308
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	3 cut(s)	30, 43, 316
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	154, 312
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	18, 46, 159
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	217, 301
Hpy188I	TCNGA	2 cut(s)	25, 45
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	217, 301
Hpy99I	CGWCG	3 cut(s)	296, 299, 433
HpyAV	CCTTC	4 cut(s)	107, 140, 256, 328
HpyCH4III	ACNGT	2 cut(s)	85, 202
HpyCH4IV	ACGT	4 cut(s)	294, 351, 360, 400
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
HpyF3I	CTNAG	3 cut(s)	11, 183, 381
HpySE526I	ACGT	4 cut(s)	294, 351, 360, 400
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	154, 312
Kzo9I	GATC	2 cut(s)	178, 268
LmnI	GCTCC	2 cut(s)	33, 319
LpnPI	CCDG	7 cut(s)	229, 303, 330, 330, 357, 368, 387
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	244, 256
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	4 cut(s)	294, 351, 360, 400
MaeIII	GTNAC	2 cut(s)	160, 440
MalI	GATC	2 cut(s)	180, 270
MboI	GATC	2 cut(s)	178, 268
MboII	GAAGA	5 cut(s)	76, 112, 138, 145, 271
MflI	RGATCY	2 cut(s)	178, 268
MhlI	GDGCHC	3 cut(s)	30, 43, 316
MlyI	GAGTC	3 cut(s)	27, 55, 168
MnlI	CCTC	3 cut(s)	348, 390, 409
MslI	CAYNNNNRTG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	318, 345
MvaI	CCWGG	2 cut(s)	318, 345
MwoI	GCNNNNNNNGC	3 cut(s)	117, 193, 320
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	178, 268
NlaIII	CATG	2 cut(s)	154, 312
NlaIV	GGNNCC	4 cut(s)	180, 219, 315, 339
NmuCI	GTSAC	2 cut(s)	160, 440
OliI	CACNNNNGTG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	3 cut(s)	26, 54, 167
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	3 cut(s)	26, 54, 167
Ppu21I	YACGTR	2 cut(s)	352, 401
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	316, 343
PspCI	CACGTG	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	316, 343
PspN4I	GGNNCC	4 cut(s)	180, 219, 315, 339
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	178, 268
RsaI	GTAC	2 cut(s)	285, 350
RsaNI	GTAC	2 cut(s)	284, 349
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	178, 268
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	3 cut(s)	27, 55, 168
ScrFI	CCNGG	2 cut(s)	318, 345
SduI	GDGCHC	3 cut(s)	30, 43, 316
SfaNI	GCATC	2 cut(s)	244, 256
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	316, 343
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	85, 202
TaiI	ACGT	4 cut(s)	297, 354, 363, 403
TaqI	TCGA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	160, 440
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	160, 440
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	217
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.