FvH4_1g13030

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008798
Physical Location & Seq
Reverse (-)
7179256 .. 7183218
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13030.t1

Sequence Viewer

Length: 963 bp
ATGGCGATGGCTTCTATGCACATTTCACTCCCTACCCTCACTCCACCAAACCTTCGCCGAGTCAATCGGTATTGTTTGCAATCACAAAAAAGGTCGTCTGTTATTGCTATGGCGAGTTCGTACAAGGAGATTGCTACTTCTGGAGTGAAGGTTACAGATGGAGAAGGGAACTTACCCAAGGTTGTCTTGACCGGTTCAAATGGCAGTGAGGCAGATGTGTATCTATTTGGTGGATGCATTACTTCTTGGAAAGTACCGAATGGGAAAGATCTCCTTTTCGTGAGACCTGATGCTGTGTTTAATGGGCAGAAACCGATCAGTGGAGGAGTTCCGCATTGTTTCCCACAGTTTGGACCCGGCCTGATGCAGCAGCATGGATTTGCAAGAAATCTAGACTGGTCGATCGTTGATTCTGAAAATGTGCAAGGAGATCCTGTCTTAACTTTAGAACTGAAAGATGGTCCTTACAGTCGTGCCATGTGGGATTTCAGTTTTCAAGCATTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTTTTATTAAAAATACAGACAGCAATCCATTTTCATTCAGTACCGCGCTGCATACTTATTTCAGTGCTTCTGCACAAGCAGCATCAGTTAAAGGTTTGAAAGGCCGTAAAACACTAAATAAAGATCCCGATCCCAAGAATCCATTGGAGGGCAAGGAAGAAAGGGATGCTGTCACATTTCCTGGATTTGTGGATTGTGTATACCTGGACGCTCCTAGAGAGTTGCATCTTGATAATGGATTAGGTGATATAATATCTATCAAGAACACCAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACAATGGAAGCATGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGATTGGAAATGTCCAGCTAGAGCCGGGTAACACTTGGACTGCTACACAACAACTCAGCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

321

Amino Acids

35.2

Weight (kDa)

5.98

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 60 - 318 2.9e-43 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AccI GTMKAC 1 cut(s) 744
AccII CGCG 1 cut(s) 590
AciI CCGC 2 cut(s) 332, 588
AclWI GGATC 3 cut(s) 425, 662, 668
AfaI GTAC 4 cut(s) 122, 255, 506, 586
AfiI CCNNNNNNNGG 3 cut(s) 320, 350, 692
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 3 cut(s) 198, 497, 643
AjnI CCWGG 2 cut(s) 724, 747
AluBI AGCT 1 cut(s) 913
AluI AGCT 1 cut(s) 913
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 3 cut(s) 425, 662, 668
AoxI GGCC 2 cut(s) 358, 646
ApeKI GCWGC 4 cut(s) 367, 370, 592, 623
AsiGI ACCGGT 1 cut(s) 191
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 2 cut(s) 353, 461
AsuC2I CCSGG 2 cut(s) 357, 921
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 2 cut(s) 353, 461
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 4 cut(s) 379, 382, 579, 635
BccI CCATC 2 cut(s) 152, 452
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 2 cut(s) 726, 749
BcnI CCSGG 2 cut(s) 357, 921
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 3 cut(s) 392, 759, 914
BglII AGATCT 1 cut(s) 268
BisI GCNGC 4 cut(s) 368, 371, 593, 624
BlsI GCNGC 4 cut(s) 369, 372, 594, 625
Bme1390I CCNGG 4 cut(s) 357, 726, 749, 921
Bme18I GGWCC 2 cut(s) 353, 461
BmgT120I GGNCC 2 cut(s) 353, 461
BmiI GGNNCC 2 cut(s) 355, 839
BmrFI CCNGG 4 cut(s) 357, 726, 749, 921
BmsI GCATC 6 cut(s) 224, 280, 354, 635, 700, 778
BpmI CTGGAG 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 357, 921
BsaBI GATNNNNATC 2 cut(s) 219, 672
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 6 cut(s) 25, 55, 135, 165, 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 350, 692
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 401
Bse8I GATNNNNATC 2 cut(s) 219, 672
BseBI CCWGG 2 cut(s) 726, 749
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 239, 715
BseJI GATNNNNATC 2 cut(s) 219, 672
BseLI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 379, 382, 579, 635
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 360, 648
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 405
BsiSI CCGG 3 cut(s) 192, 357, 920
BslI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 2 cut(s) 360, 648
Bso31I GGTCTC 1 cut(s) 277
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 6 cut(s) 268, 315, 402, 430, 667, 673
BspACI CCGC 2 cut(s) 332, 588
BspANI GGCC 2 cut(s) 360, 648
BspCNI CTCAG 1 cut(s) 963
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 2 cut(s) 355, 839
BspPI GGATC 3 cut(s) 425, 662, 668
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 6 cut(s) 268, 315, 402, 430, 667, 673
BssNAI GTATAC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 745
Bst2UI CCWGG 2 cut(s) 726, 749
Bst4CI ACNGT 2 cut(s) 348, 470
BstAUI TGTACA 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 1 cut(s) 950
BstF5I GGATG 2 cut(s) 239, 715
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 6 cut(s) 271, 318, 405, 433, 670, 676
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 6 cut(s) 268, 315, 402, 430, 667, 673
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 2 cut(s) 726, 749
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 4 cut(s) 355, 724, 747, 919
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 379, 382, 579, 635
BstX2I RGATCY 3 cut(s) 268, 430, 667
BstYI RGATCY 3 cut(s) 268, 430, 667
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 2 cut(s) 360, 648
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 239, 715
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 211, 325, 613
Cac8I GCNNGC 1 cut(s) 862
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 353, 461
CseI GACGC 2 cut(s) 761, 833
Csp6I GTAC 4 cut(s) 121, 254, 505, 585
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 3 cut(s) 374, 478, 861
CviJI RGCY 6 cut(s) 11, 360, 531, 648, 913, 919
CviKI_1 RGCY 6 cut(s) 11, 360, 531, 648, 913, 919
CviQI GTAC 4 cut(s) 121, 254, 505, 585
DdeI CTNAG 1 cut(s) 950
DpnI GATC 6 cut(s) 270, 317, 404, 432, 669, 675
DpnII GATC 6 cut(s) 268, 315, 402, 430, 667, 673
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 353, 461
EcoRII CCWGG 2 cut(s) 724, 747
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 377, 481, 864
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 258, 290
FatI CATG 3 cut(s) 373, 477, 860
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 368, 371, 593, 624
FokI GGATG 2 cut(s) 246, 722
Fsp4HI GCNGC 4 cut(s) 368, 371, 593, 624
FspBI CTAG 3 cut(s) 392, 759, 914
GlaI GCGC 1 cut(s) 591
GluI GCNGC 4 cut(s) 368, 371, 593, 624
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 360, 648
HapII CCGG 3 cut(s) 192, 357, 920
HgaI GACGC 2 cut(s) 761, 833
HhaI GCGC 1 cut(s) 592
Hin1II CATG 3 cut(s) 377, 481, 864
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 60, 410, 682
HpaII CCGG 3 cut(s) 192, 357, 920
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 3 cut(s) 415, 823, 849
Hpy188III TCNNGA 7 cut(s) 141, 187, 280, 392, 671, 773, 805
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 3 cut(s) 62, 142, 158
HpyCH4III ACNGT 2 cut(s) 348, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 1 cut(s) 950
Hsp92II CATG 3 cut(s) 377, 481, 864
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 6 cut(s) 268, 315, 402, 430, 667, 673
LmnI GCTCC 1 cut(s) 760
Lsp1109I GCAGC 4 cut(s) 379, 382, 579, 635
LweI GCATC 6 cut(s) 224, 280, 354, 635, 700, 778
MaeI CTAG 3 cut(s) 392, 759, 914
MaeIII GTNAC 3 cut(s) 151, 715, 923
MalI GATC 6 cut(s) 270, 317, 404, 432, 669, 675
MboI GATC 6 cut(s) 268, 315, 402, 430, 667, 673
MboII GAAGA 1 cut(s) 713
MfeI CAATTG 1 cut(s) 814
MflI RGATCY 3 cut(s) 268, 430, 667
MluCI AATT 1 cut(s) 814
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 4 cut(s) 47, 202, 317, 685
Mph1103I ATGCAT 1 cut(s) 239
MseI TTAA 4 cut(s) 300, 440, 552, 633
MspI CCGG 3 cut(s) 192, 357, 920
MspR9I CCNGG 4 cut(s) 357, 726, 749, 921
MunI CAATTG 1 cut(s) 814
MvaI CCWGG 2 cut(s) 726, 749
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 623
NciI CCSGG 2 cut(s) 357, 921
NdeII GATC 6 cut(s) 268, 315, 402, 430, 667, 673
NlaIII CATG 3 cut(s) 377, 481, 864
NlaIV GGNNCC 2 cut(s) 355, 839
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 1 cut(s) 864
PaeI GCATGC 1 cut(s) 864
PfeI GAWTC 2 cut(s) 410, 682
PflMI CCANNNNNTGG 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 724
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 4 cut(s) 369, 372, 594, 625
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 724, 747
PspGI CCWGG 2 cut(s) 724, 747
PspN4I GGNNCC 2 cut(s) 355, 839
PspPI GGNCC 2 cut(s) 353, 461
PsuI RGATCY 3 cut(s) 268, 430, 667
PvuI CGATCG 1 cut(s) 405
RsaI GTAC 4 cut(s) 122, 255, 506, 586
RsaNI GTAC 4 cut(s) 121, 254, 505, 585
SaqAI TTAA 4 cut(s) 300, 440, 552, 633
SatI GCNGC 4 cut(s) 368, 371, 593, 624
Sau3AI GATC 6 cut(s) 268, 315, 402, 430, 667, 673
Sau96I GGNCC 2 cut(s) 353, 461
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 4 cut(s) 357, 726, 749, 921
SetI ASST 9 cut(s) 54, 95, 153, 183, 289, 640, 750, 790, 915
SfaNI GCATC 6 cut(s) 224, 280, 354, 635, 700, 778
SinI GGWCC 2 cut(s) 353, 461
SphI GCATGC 1 cut(s) 864
Sse9I AATT 1 cut(s) 814
SsiI CCGC 2 cut(s) 332, 588
SspMI CTAG 3 cut(s) 392, 759, 914
StyD4I CCNGG 4 cut(s) 355, 724, 747, 919
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 348, 470
TaqI TCGA 1 cut(s) 401
TasI AATT 1 cut(s) 814
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 2 cut(s) 410, 682
Tru1I TTAA 4 cut(s) 300, 440, 552, 633
Tru9I TTAA 4 cut(s) 300, 440, 552, 633
TscAI CASTG 3 cut(s) 211, 325, 613
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 4 cut(s) 367, 370, 592, 623
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 1 cut(s) 567
TspRI CASTG 3 cut(s) 211, 325, 613
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 353, 461
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 1 cut(s) 864
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 3 cut(s) 392, 759, 914
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.