Rmu_sc0006314.1_g000006

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006314.1
OG0008798
Physical Location & Seq
Reverse (-)
27152 .. 30638
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006314.1_g000006.1.cds

Sequence Viewer

Length: 963 bp
atggcgatggcttctatgcacatttcactccctaccctcactccaccaaactttcgccgactcaatcggtattgtttccaagcacaaaaaaggtcccctgttattgctatggccagttcatacaaggagattgctacttctggagtgaaggttacagaaggagaaggaagcttacccaaggtcgttttgaccgggtcaaatggcagtgaggcagatgtgtatctattcggtggatgtgttacttcttggaaagtaccaaatgggaaagacctcctttttgtcagacctgatgctgtgttcaatgggaagaaaccaatcagtggaggagttccacattgtttcccacagtttggacccggcccaatgcagcagcatggatttgcaagaaatctggactggttgatcgttgattctgaaaatgtgcaaggagatcctgtcttaactttggaactgaaagatggtccttacagtcgtgccatgtgggatttcagctttcaagctttgtacaagattactttgcaaacaaagagcctttccaccgaacttgttattaaaaatacagacagcaagccattttcattcagtaccgcgctgcatacttacttcagtgcttctgcacaagcagcatcagttaaaggtttgaaaggccgcaaaacactaaataaagatcctgatcccaagaatccattggagggcaaggaagaaagggatgcggtcacttttcctggatttgtggattgtgtatacctggatgcccctaatgagttgcatctcgataatggcttaggtgatataatatctatcaagaacacaaattggtcggacgctgttttatggaacccatatctgacgatggaagcgtgctacaaggattttgtttgtgtggaaaatgcacagattggaaatgttcagctagagcctggtaactcttggactgctacacagcatctcagcatcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

320

Amino Acids

35.17

Weight (kDa)

6.31

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 320, 350
AccI GTMKAC 1 cut(s) 744
AccII CGCG 1 cut(s) 590
AciI CCGC 3 cut(s) 588, 649, 713
AclWI GGATC 3 cut(s) 425, 662, 668
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 589
AfaI GTAC 3 cut(s) 255, 506, 586
AfiI CCNNNNNNNGG 3 cut(s) 320, 350, 692
AgsI TTSAA 3 cut(s) 301, 497, 643
AjnI CCWGG 3 cut(s) 724, 747, 919
AluBI AGCT 4 cut(s) 171, 492, 500, 913
AluI AGCT 4 cut(s) 171, 492, 500, 913
AlwI GGATC 3 cut(s) 425, 662, 668
AoxI GGCC 3 cut(s) 111, 358, 646
ApeKI GCWGC 4 cut(s) 367, 370, 592, 623
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 4 cut(s) 93, 353, 359, 461
AsuC2I CCSGG 2 cut(s) 193, 357
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 3 cut(s) 93, 353, 461
BalI TGGCCA 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 4 cut(s) 379, 382, 579, 635
BccI CCATC 2 cut(s) 452, 847
BciT130I CCWGG 3 cut(s) 726, 749, 921
BcnI CCSGG 2 cut(s) 193, 357
BfaI CTAG 1 cut(s) 914
BisI GCNGC 5 cut(s) 368, 371, 593, 624, 649
BlsI GCNGC 5 cut(s) 369, 372, 594, 625, 650
Bme1390I CCNGG 5 cut(s) 193, 357, 726, 749, 921
Bme18I GGWCC 3 cut(s) 93, 353, 461
BmgT120I GGNCC 4 cut(s) 93, 353, 359, 461
BmiI GGNNCC 3 cut(s) 95, 355, 839
BmrFI CCNGG 5 cut(s) 193, 357, 726, 749, 921
BmsI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
BpmI CTGGAG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 784
BpuMI CCSGG 2 cut(s) 193, 357
BsaBI GATNNNNATC 2 cut(s) 219, 672
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 6 cut(s) 25, 55, 135, 165, 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 350, 692
Bse1I ACTGG 2 cut(s) 114, 401
Bse8I GATNNNNATC 2 cut(s) 219, 672
BseBI CCWGG 3 cut(s) 726, 749, 921
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 3 cut(s) 239, 715, 757
BseJI GATNNNNATC 2 cut(s) 219, 672
BseLI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BseNI ACTGG 2 cut(s) 114, 401
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 379, 382, 579, 635
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 590
BshFI GGCC 3 cut(s) 113, 360, 648
BsiSI CCGG 2 cut(s) 192, 357
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 3 cut(s) 113, 360, 648
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 402, 430, 667, 673
BspACI CCGC 3 cut(s) 588, 649, 713
BspANI GGCC 3 cut(s) 113, 360, 648
BspCNI CTCAG 1 cut(s) 963
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 3 cut(s) 95, 355, 839
BspPI GGATC 3 cut(s) 425, 662, 668
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 2 cut(s) 114, 401
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 402, 430, 667, 673
BssNAI GTATAC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 745
Bst2UI CCWGG 3 cut(s) 726, 749, 921
Bst4CI ACNGT 2 cut(s) 348, 470
BstAUI TGTACA 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 569, 862
BstDEI CTNAG 2 cut(s) 784, 950
BstF5I GGATG 3 cut(s) 239, 715, 757
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 4 cut(s) 405, 433, 670, 676
BstMBI GATC 4 cut(s) 402, 430, 667, 673
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 3 cut(s) 726, 749, 921
BstSCI CCNGG 5 cut(s) 191, 355, 724, 747, 919
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 379, 382, 579, 635
BstX2I RGATCY 2 cut(s) 430, 667
BstYI RGATCY 2 cut(s) 430, 667
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 113, 360, 648
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 239, 715, 757
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 211, 325, 613
Cac8I GCNNGC 2 cut(s) 569, 862
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 4 cut(s) 93, 353, 359, 461
CseI GACGC 1 cut(s) 833
Csp6I GTAC 3 cut(s) 254, 505, 585
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 2 cut(s) 374, 478
CviQI GTAC 3 cut(s) 254, 505, 585
DdeI CTNAG 2 cut(s) 784, 950
DpnI GATC 4 cut(s) 404, 432, 669, 675
DpnII GATC 4 cut(s) 402, 430, 667, 673
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 3 cut(s) 93, 353, 461
Eco57I CTGAAG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 724, 747, 919
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 377, 481
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 373, 477
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 368, 371, 593, 624, 649
FokI GGATG 3 cut(s) 246, 722, 764
Fsp4HI GCNGC 5 cut(s) 368, 371, 593, 624, 649
FspBI CTAG 1 cut(s) 914
GlaI GCGC 1 cut(s) 591
GluI GCNGC 5 cut(s) 368, 371, 593, 624, 649
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 113, 360, 648
HapII CCGG 2 cut(s) 192, 357
HgaI GACGC 1 cut(s) 833
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 377, 481
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HindIII AAGCTT 2 cut(s) 169, 498
HinfI GANTC 3 cut(s) 60, 410, 682
HpaII CCGG 2 cut(s) 192, 357
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 4 cut(s) 284, 415, 823, 849
Hpy188III TCNNGA 5 cut(s) 141, 392, 671, 773, 805
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 3 cut(s) 142, 152, 158
HpyCH4III ACNGT 2 cut(s) 348, 470
HpyCH4V TGCA 9 cut(s) 19, 367, 383, 424, 520, 595, 617, 769, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 2 cut(s) 784, 950
Hsp92II CATG 2 cut(s) 377, 481
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 4 cut(s) 402, 430, 667, 673
Lsp1109I GCAGC 4 cut(s) 379, 382, 579, 635
LweI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
MaeI CTAG 1 cut(s) 914
MaeIII GTNAC 4 cut(s) 151, 238, 715, 923
MalI GATC 4 cut(s) 404, 432, 669, 675
MboI GATC 4 cut(s) 402, 430, 667, 673
MboII GAAGA 2 cut(s) 319, 713
MflI RGATCY 2 cut(s) 430, 667
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 5 cut(s) 47, 202, 281, 317, 685
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 3 cut(s) 440, 552, 633
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 2 cut(s) 192, 357
MspR9I CCNGG 5 cut(s) 193, 357, 726, 749, 921
MvaI CCWGG 3 cut(s) 726, 749, 921
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 623
NciI CCSGG 2 cut(s) 193, 357
NdeII GATC 4 cut(s) 402, 430, 667, 673
NlaIII CATG 2 cut(s) 377, 481
NlaIV GGNNCC 3 cut(s) 95, 355, 839
NmuCI GTSAC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 857
PfeI GAWTC 2 cut(s) 410, 682
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 2 cut(s) 320, 350
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 5 cut(s) 369, 372, 594, 625, 650
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 724, 747, 919
PspGI CCWGG 3 cut(s) 724, 747, 919
PspN4I GGNNCC 3 cut(s) 95, 355, 839
PspPI GGNCC 4 cut(s) 93, 353, 359, 461
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 2 cut(s) 430, 667
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 3 cut(s) 255, 506, 586
RsaNI GTAC 3 cut(s) 254, 505, 585
SaqAI TTAA 3 cut(s) 440, 552, 633
SatI GCNGC 5 cut(s) 368, 371, 593, 624, 649
Sau3AI GATC 4 cut(s) 402, 430, 667, 673
Sau96I GGNCC 4 cut(s) 93, 353, 359, 461
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 5 cut(s) 193, 357, 726, 749, 921
SfaNI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
SinI GGWCC 3 cut(s) 93, 353, 461
Sse9I AATT 1 cut(s) 814
SsiI CCGC 3 cut(s) 588, 649, 713
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 5 cut(s) 191, 355, 724, 747, 919
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 348, 470
TaqI TCGA 1 cut(s) 774
TasI AATT 1 cut(s) 814
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 2 cut(s) 410, 682
Tru1I TTAA 3 cut(s) 440, 552, 633
Tru9I TTAA 3 cut(s) 440, 552, 633
TscAI CASTG 3 cut(s) 211, 325, 613
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 4 cut(s) 367, 370, 592, 623
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 108, 567
TspRI CASTG 3 cut(s) 211, 325, 613
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 2 cut(s) 320, 350
VpaK11BI GGWCC 3 cut(s) 93, 353, 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.