Rh2DG149800

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008798
Physical Location & Seq
Reverse (-)
12505231 .. 12510560
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG149800.1

Sequence Viewer

Length: 459 bp
ATGTGGGATTTCAGTTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTCAGTACCGCGCTGCATACTTACTTCAGTGCTTCTGCACAAGCAGCATCAGTTAAAGGTTTGAAAGGCCGGAAAACACTGAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGAAAGGAAGAGAGGGATGTGGTCACTTTTCCTGGATTTGTAGATTGTGTATACCTGGACGCCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCATGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGGTAATAAACCTCTCTGTTTCTTCAGTACTGACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

5.09

Isoelectric Point (pI)

15.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 2 - 141 8.2e-14 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 185, 191
AcuI CTGAAG 2 cut(s) 112, 426
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 3 cut(s) 29, 109, 447
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 20, 166
AjnI CCWGG 2 cut(s) 247, 270
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 2 cut(s) 185, 191
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 115, 146
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 323
BbvI GCAGC 2 cut(s) 102, 158
BccI CCATC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 249, 272
BisI GCNGC 2 cut(s) 116, 147
BlsI GCNGC 2 cut(s) 117, 148
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 249, 272
BmiI GGNNCC 1 cut(s) 362
BmrFI CCNGG 2 cut(s) 249, 272
BmsI GCATC 2 cut(s) 158, 301
Bpu10I CCTNAGC 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 249, 272
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 102, 158
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 2 cut(s) 190, 196
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 171
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 362
BspPI GGATC 2 cut(s) 185, 191
BsrGI TGTACA 1 cut(s) 27
BssMI GATC 2 cut(s) 190, 196
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 249, 272
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 92, 385
BstDEI CTNAG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 193, 199
BstMBI GATC 2 cut(s) 190, 196
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 2 cut(s) 249, 272
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 247, 270
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 102, 158
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 136, 179
Cac8I GCNNGC 2 cut(s) 92, 385
CfoI GCGC 1 cut(s) 115
CseI GACGC 2 cut(s) 284, 356
Csp6I GTAC 3 cut(s) 28, 108, 446
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 1 cut(s) 384
CviJI RGCY 5 cut(s) 23, 54, 94, 171, 306
CviKI_1 RGCY 5 cut(s) 23, 54, 94, 171, 306
CviQI GTAC 3 cut(s) 28, 108, 446
DdeI CTNAG 1 cut(s) 307
DpnI GATC 2 cut(s) 192, 198
DpnII GATC 2 cut(s) 190, 196
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco57I CTGAAG 2 cut(s) 112, 426
EcoRII CCWGG 2 cut(s) 247, 270
FaeI CATG 1 cut(s) 387
FaiI YATR 6 cut(s) 120, 268, 317, 358, 367, 385
FatI CATG 1 cut(s) 383
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 116, 147
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 116, 147
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 116, 147
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 172
HgaI GACGC 2 cut(s) 284, 356
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 387
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 346, 372
Hpy188III TCNNGA 3 cut(s) 194, 296, 328
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 43, 118, 140, 292, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 307
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 387
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 190, 196
LpnPI CCDG 7 cut(s) 185, 207, 234, 257, 261, 284, 404
Lsp1109I GCAGC 2 cut(s) 102, 158
LweI GCATC 2 cut(s) 158, 301
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 192, 198
MboI GATC 2 cut(s) 190, 196
MboII GAAGA 2 cut(s) 236, 432
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 3 cut(s) 208, 222, 440
MseI TTAA 2 cut(s) 75, 156
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 249, 272
MvaI CCWGG 2 cut(s) 249, 272
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 190, 196
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 2 cut(s) 117, 148
Psp6I CCWGG 2 cut(s) 247, 270
PspGI CCWGG 2 cut(s) 247, 270
PspN4I GGNNCC 1 cut(s) 362
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 3 cut(s) 29, 109, 447
RsaNI GTAC 3 cut(s) 28, 108, 446
SaqAI TTAA 2 cut(s) 75, 156
SatI GCNGC 2 cut(s) 116, 147
Sau3AI GATC 2 cut(s) 190, 196
ScaI AGTACT 1 cut(s) 447
ScrFI CCNGG 2 cut(s) 249, 272
SetI ASST 6 cut(s) 25, 163, 273, 313, 423, 432
SfaNI GCATC 2 cut(s) 158, 301
SphI GCATGC 1 cut(s) 387
Sse9I AATT 1 cut(s) 337
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 247, 270
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 337
TatI WGTACW 2 cut(s) 27, 445
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 75, 156
Tru9I TTAA 2 cut(s) 75, 156
TscAI CASTG 2 cut(s) 136, 186
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 115, 146
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 136, 186
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.