Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008798

Physical Location & Seq

Genomic Coordinates Forward (+)

16803401 .. 16804759

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCGTTTCGCTCCCCACCCTCACTTCTCCGAACCCCCGCCGAGTCAACCGGTTTTGGCAAACAACGCCAAAAACGTCGTCGTCCGTGATGGCTGTTGCAAGCGGCCCCGCCAGCAAAGAGCTCGCCACTGCGGGGGTGAAATTTGCAGAGGGAGAAGAGAAATTGCCAAAGGTTGTTTTGACCAGCGCCGGCGGCAGTGAGGCAGATGTATATTTATATGGTGGTGTTATTACTTCATGGAAAGTCCCAAATGGGAGAGACCTCCTTTTTATTAGACCTGATGCGGTGTTCAACAAGAAGAAACCAATCAGTGGAGGCGTTCCACATTGTTTTCCACAGTTTGGGCCAGGCCCTATGCAGCAGCACGGATTTGCAAGAAATCTGGACTGGTCCATCATTGATTCTGAAAATGTGCAAGGATCGATCCTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

146

Amino Acids

15.58

Weight (kDa)

9.41

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66530 AT5G66530 AT5G66530 AT5G66530
fragaria_vesca	FvH4_1g13030
malus_domestica	MD02G1144900.v1.1 MD15G1259100.v1.1
prunus_persica	Prupe.7G156700_v2.0.a1
pyrus_communis	pycom02g11480 pycom15g22730
rosa_chinensis	RchiOBHm_Chr2g0101191
rosa_laevigata	RLG00000017054
rosa_multiflora	Rmu_sc0006314.1_g000006 Rmu_sc0007698.1_g000005 Rmu_sc0010885.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141510
rosa_rugosa	Rorug02G0100300
rosa_samantha	Rh2AG144300 Rh2BG149300 Rh2CG150600 Rh2DG149800 Rh6BG056500
rosa_wichuraiana	Rw2G011310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	314, 344
AciI	CCGC	6 cut(s)	40, 105, 111, 134, 195, 287
AclWI	GGATC	2 cut(s)	421, 430
AcsI	RAATTY	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	135, 314, 344
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	421, 430
AoxI	GGCC	3 cut(s)	106, 347, 352
ApeKI	GCWGC	2 cut(s)	361, 364
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	4 cut(s)	107, 347, 353, 393
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	373, 376
BccI	CCATC	2 cut(s)	85, 404
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	4 cut(s)	106, 196, 362, 365
BlsI	GCNGC	4 cut(s)	107, 197, 363, 366
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	4 cut(s)	107, 347, 353, 393
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 314, 344
Bse118I	RCCGGY	2 cut(s)	51, 191
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	425
BseLI	CCNNNNNNNGG	3 cut(s)	135, 314, 344
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	373, 376
BshFI	GGCC	3 cut(s)	108, 349, 354
BshTI	ACCGGT	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	52, 192
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	135, 314, 344
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	108, 349, 354
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	422, 426
BspACI	CCGC	6 cut(s)	40, 105, 111, 134, 195, 287
BspANI	GGCC	3 cut(s)	108, 349, 354
BspDI	ATCGAT	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	421, 430
BspTNI	GGTCTC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	51, 191
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	2 cut(s)	51, 191
BssMI	GATC	2 cut(s)	422, 426
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	103, 115, 126, 193
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	425, 429
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	422, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 67, 114, 195
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	373, 376
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	108, 349, 354
BsuTUI	ATCGAT	1 cut(s)	425
BtsI	GCAGTG	2 cut(s)	129, 205
BtsIMutI	CAGTG	3 cut(s)	129, 205, 319
Cac8I	GCNNGC	4 cut(s)	103, 115, 126, 193
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	2 cut(s)	51, 191
Cfr13I	GGNCC	4 cut(s)	107, 347, 353, 393
ClaI	ATCGAT	1 cut(s)	425
CspAI	ACCGGT	1 cut(s)	51
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	5 cut(s)	95, 108, 124, 349, 354
CviKI_1	RGCY	5 cut(s)	95, 108, 124, 349, 354
DpnI	GATC	2 cut(s)	424, 428
DpnII	GATC	2 cut(s)	422, 426
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	1 cut(s)	243
FaiI	YATR	6 cut(s)	214, 220, 222, 241, 359, 436
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	239
FauI	CCCGC	3 cut(s)	47, 118, 127
Fnu4HI	GCNGC	4 cut(s)	106, 196, 362, 365
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	106, 196, 362, 365
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	106, 196, 362, 365
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	108, 349, 354
HapII	CCGG	2 cut(s)	52, 192
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	45, 404
HpaII	CCGG	2 cut(s)	52, 192
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	33, 409
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	82, 85
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	5 cut(s)	101, 149, 361, 377, 418
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 67, 114, 195
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	243
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	422, 426
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	9 cut(s)	65, 127, 199, 205, 294, 336, 363, 371, 376
Lsp1109I	GCAGC	2 cut(s)	373, 376
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	77
MalI	GATC	2 cut(s)	424, 428
MboI	GATC	2 cut(s)	422, 426
MboII	GAAGA	2 cut(s)	170, 313
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	143, 164
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	32, 145, 196, 275, 311
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	191
MspI	CCGG	2 cut(s)	52, 192
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	10, 67, 114, 195
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	422, 426
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	404
PflMI	CCANNNNNTGG	2 cut(s)	314, 344
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	107, 197, 363, 366
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	4 cut(s)	107, 347, 353, 393
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	106, 196, 362, 365
Sau3AI	GATC	2 cut(s)	422, 426
Sau96I	GGNCC	4 cut(s)	107, 347, 353, 393
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	80, 126, 177, 267, 283
SfaNI	GCATC	1 cut(s)	274
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	143, 164
SsiI	CCGC	6 cut(s)	40, 105, 111, 134, 195, 287
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	425
TasI	AATT	2 cut(s)	143, 164
TauI	GCSGC	2 cut(s)	108, 198
TfiI	GAWTC	1 cut(s)	404
TscAI	CASTG	3 cut(s)	136, 205, 319
TseI	GCWGC	2 cut(s)	361, 364
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	2 cut(s)	76, 384
TspRI	CASTG	3 cut(s)	136, 205, 319
Van91I	CCANNNNNTGG	2 cut(s)	314, 344
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.