MD15G1259100.v1.1

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008798
Physical Location & Seq
Reverse (-)
22002584 .. 22004890
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1259100.v1.1.491

Sequence Viewer

Length: 774 bp
ATGAGTTTTGATGCTTGCAGTGAGGCAGATGCATATTTATATGGTCGTGTTATTACTTCATGGAAAGTCCCAAATGGGAGAGACCTCCTTTTTGTTCGACCTGATGCGGTGTTCAACAAGAAGAAACCAATCAGGTTGTTTTCGAATTCGTGGCTCGGAATTTTCTTCGAGATACTGACTATACTCTCTTGGGATAGTGGAGGCGTTCCACATTGTTTTCCACAGTTTGGACCAGGCCCTATGCAGCAGCACGGATTTGCAAGAAATCTGGATTGGTCCGTCATTGATTCTGAAAATGTGCAAGGAGATCCTACCATAACTTTAGAACTAAAGGAAGGTGAATGCAGTCGCTCCATGTGGGATTTCAGCTTTCAAGCTTTGTACAAGGTCACTTTGCAAACAAAGAGCCTTTCCACTGAACTTGTAATTAAAAATACAGACAGCAAACCATTTTCATTCAGCACCGCATTGCATACATACTTCCGCGCCGCTGTACAAGGGGCCTCAGTTAACGGTTTGAAAGGATGCAAAACACTAAATAAAGATCCTGATCCCAAGAATCCACTGGAGGGGAAGGAAGAAAGGCGCGTATCATTTTCTTCACATGCTTTTATCAAGAACACAAATTGGACAGATGCTGTTTTGTGGAACCCATATCTGACAATGGAAGCATGCTACAAAGACTTTGTTTGTGTCGAAAATGCAAAGATTGGAAACGTACAGCTAGAGCCTGGTAATACGTGGACTGCTACGCAACATCTTAGCATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

258

Amino Acids

28.96

Weight (kDa)

6.52

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 7 - 205 1.1e-27 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 227
AccII CGCG 2 cut(s) 486, 588
AciI CCGC 4 cut(s) 107, 465, 484, 489
AclWI GGATC 3 cut(s) 302, 539, 545
AcsI RAATTY 2 cut(s) 145, 159
AfaI GTAC 3 cut(s) 383, 495, 720
AfiI CCNNNNNNNGG 2 cut(s) 227, 569
AgsI TTSAA 3 cut(s) 115, 374, 520
AjnI CCWGG 2 cut(s) 232, 730
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 3 cut(s) 369, 377, 724
AluI AGCT 3 cut(s) 369, 377, 724
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 3 cut(s) 302, 539, 545
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 2 cut(s) 235, 501
ApeKI GCWGC 2 cut(s) 244, 247
ApoI RAATTY 2 cut(s) 145, 159
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AseI ATTAAT 1 cut(s) 768
AspLEI GCGC 2 cut(s) 488, 588
AspS9I GGNCC 4 cut(s) 230, 236, 276, 501
AsuHPI GGTGA 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 230, 276
BbvI GCAGC 2 cut(s) 256, 259
BciT130I CCWGG 2 cut(s) 234, 732
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 725
BisI GCNGC 3 cut(s) 245, 248, 489
BlsI GCNGC 3 cut(s) 246, 249, 490
Bme1390I CCNGG 2 cut(s) 234, 732
Bme18I GGWCC 2 cut(s) 230, 276
BmgT120I GGNCC 4 cut(s) 230, 236, 276, 501
BmiI GGNNCC 2 cut(s) 502, 650
BmrFI CCNGG 2 cut(s) 234, 732
BmsI GCATC 4 cut(s) 19, 94, 515, 625
BpmI CTGGAG 1 cut(s) 587
Bpu14I TTCGAA 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 569
Bse1I ACTGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 234, 732
BseGI GGATG 1 cut(s) 530
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 227, 569
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 256, 259
Bsh1236I CGCG 2 cut(s) 486, 588
BshFI GGCC 2 cut(s) 237, 503
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 227, 569
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 237, 503
Bso31I GGTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 143
Bsp1407I TGTACA 2 cut(s) 381, 493
Bsp143I GATC 3 cut(s) 307, 544, 550
BspACI CCGC 4 cut(s) 107, 465, 484, 489
BspANI GGCC 2 cut(s) 237, 503
BspCNI CTCAG 1 cut(s) 518
BspFNI CGCG 2 cut(s) 486, 588
BspLI GGNNCC 2 cut(s) 502, 650
BspPI GGATC 3 cut(s) 302, 539, 545
BspT104I TTCGAA 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 467
BsrGI TGTACA 2 cut(s) 381, 493
BsrI ACTGG 1 cut(s) 570
BssMI GATC 3 cut(s) 307, 544, 550
Bst2UI CCWGG 2 cut(s) 234, 732
Bst4CI ACNGT 2 cut(s) 225, 515
BstAUI TGTACA 2 cut(s) 381, 493
BstBAI YACGTR 1 cut(s) 741
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 16, 673
BstDEI CTNAG 2 cut(s) 505, 761
BstF5I GGATG 1 cut(s) 530
BstFNI CGCG 2 cut(s) 486, 588
BstHHI GCGC 2 cut(s) 488, 588
BstKTI GATC 3 cut(s) 310, 547, 553
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 307, 544, 550
BstNI CCWGG 2 cut(s) 234, 732
BstNSI RCATGY 2 cut(s) 608, 675
BstSCI CCNGG 2 cut(s) 232, 730
BstUI CGCG 2 cut(s) 486, 588
BstV1I GCAGC 2 cut(s) 256, 259
BstX2I RGATCY 2 cut(s) 307, 544
BstYI RGATCY 2 cut(s) 307, 544
BsuRI GGCC 2 cut(s) 237, 503
BtsCI GGATG 1 cut(s) 530
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 414, 563
Cac8I GCNNGC 2 cut(s) 16, 673
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 2 cut(s) 488, 588
Cfr13I GGNCC 4 cut(s) 230, 236, 276, 501
Csp6I GTAC 3 cut(s) 382, 494, 719
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 4 cut(s) 60, 355, 605, 672
CviJI RGCY 8 cut(s) 154, 237, 369, 377, 408, 503, 724, 730
CviKI_1 RGCY 8 cut(s) 154, 237, 369, 377, 408, 503, 724, 730
CviQI GTAC 3 cut(s) 382, 494, 719
DdeI CTNAG 2 cut(s) 505, 761
DpnI GATC 3 cut(s) 309, 546, 552
DpnII GATC 3 cut(s) 307, 544, 550
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 230, 276
EcoO109I RGGNCCY 2 cut(s) 236, 501
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 232, 730
EcoT22I ATGCAT 1 cut(s) 34
FaeI CATG 4 cut(s) 63, 358, 608, 675
FaqI GGGAC 1 cut(s) 53
FatI CATG 4 cut(s) 59, 354, 604, 671
Fnu4HI GCNGC 3 cut(s) 245, 248, 489
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 245, 248, 489
FspBI CTAG 1 cut(s) 725
GlaI GCGC 2 cut(s) 487, 587
GluI GCNGC 3 cut(s) 245, 248, 489
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 2 cut(s) 237, 503
HhaI GCGC 2 cut(s) 488, 588
Hin1II CATG 4 cut(s) 63, 358, 608, 675
Hin6I GCGC 2 cut(s) 486, 586
HinP1I GCGC 2 cut(s) 486, 586
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 2 cut(s) 287, 559
HpaI GTTAAC 1 cut(s) 511
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 511, 744
Hpy188I TCNGA 3 cut(s) 158, 292, 660
Hpy188III TCNNGA 4 cut(s) 169, 269, 548, 616
Hpy8I GTNNAC 2 cut(s) 511, 744
HpyAV CCTTC 2 cut(s) 329, 568
HpyCH4III ACNGT 2 cut(s) 225, 515
HpyCH4IV ACGT 2 cut(s) 717, 740
HpyF3I CTNAG 2 cut(s) 505, 761
HpySE526I ACGT 2 cut(s) 717, 740
Hsp92II CATG 4 cut(s) 63, 358, 608, 675
HspAI GCGC 2 cut(s) 486, 586
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 307, 544, 550
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 9 cut(s) 114, 118, 219, 246, 254, 551, 561, 717, 744
Lsp1109I GCAGC 2 cut(s) 256, 259
LweI GCATC 4 cut(s) 19, 94, 515, 625
MaeI CTAG 1 cut(s) 725
MaeII ACGT 2 cut(s) 717, 740
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 309, 546, 552
MboI GATC 3 cut(s) 307, 544, 550
MboII GAAGA 4 cut(s) 133, 157, 590, 591
MflI RGATCY 2 cut(s) 307, 544
MluCI AATT 5 cut(s) 145, 159, 426, 625, 769
MnlI CCTC 5 cut(s) 16, 95, 194, 514, 562
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 3 cut(s) 429, 510, 768
MspA1I CMGCKG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 234, 732
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 2 cut(s) 234, 732
MvnI CGCG 2 cut(s) 486, 588
NdeII GATC 3 cut(s) 307, 544, 550
NlaIII CATG 4 cut(s) 63, 358, 608, 675
NlaIV GGNNCC 2 cut(s) 502, 650
NmuCI GTSAC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 608, 675
NspV TTCGAA 1 cut(s) 143
PaeI GCATGC 1 cut(s) 675
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 287, 559
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 3 cut(s) 246, 249, 490
Ppu21I YACGTR 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 232, 730
PspGI CCWGG 2 cut(s) 232, 730
PspN4I GGNNCC 2 cut(s) 502, 650
PspPI GGNCC 4 cut(s) 230, 236, 276, 501
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 2 cut(s) 307, 544
RsaI GTAC 3 cut(s) 383, 495, 720
RsaNI GTAC 3 cut(s) 382, 494, 719
SaqAI TTAA 3 cut(s) 429, 510, 768
SatI GCNGC 3 cut(s) 245, 248, 489
Sau3AI GATC 3 cut(s) 307, 544, 550
Sau96I GGNCC 4 cut(s) 230, 236, 276, 501
ScrFI CCNGG 2 cut(s) 234, 732
SfaNI GCATC 4 cut(s) 19, 94, 515, 625
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 2 cut(s) 230, 276
SphI GCATGC 1 cut(s) 675
Sse9I AATT 5 cut(s) 145, 159, 426, 625, 769
SsiI CCGC 4 cut(s) 107, 465, 484, 489
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 232, 730
TaaI ACNGT 2 cut(s) 225, 515
TaiI ACGT 2 cut(s) 720, 743
TaqI TCGA 4 cut(s) 97, 143, 168, 696
TasI AATT 5 cut(s) 145, 159, 426, 625, 769
TatI WGTACW 2 cut(s) 381, 493
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 2 cut(s) 287, 559
Tru1I TTAA 3 cut(s) 429, 510, 768
Tru9I TTAA 3 cut(s) 429, 510, 768
TscAI CASTG 3 cut(s) 25, 421, 570
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 244, 247
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 48, 444
TspGWI ACGGA 2 cut(s) 267, 268
TspRI CASTG 3 cut(s) 25, 421, 570
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 230, 276
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 145, 159
XceI RCATGY 2 cut(s) 608, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XspI CTAG 1 cut(s) 725
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.