Rh2BG149300

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008798
Physical Location & Seq
Reverse (-)
12789791 .. 12795120
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG149300.1

Sequence Viewer

Length: 573 bp
ATGCAGCAGCATGGATTTGCAAGAAATCTAGACTGGTCGATCGTTGATTCTGAAAATGTGCAAGGAGATCCTATCTTAACTTTAGAACTGAAAGATGGTCCTTACAGTCGTGCCATGTGGGATTTCAGTTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTCAGTACCGCGCTGCATACTTACTTCAGTGCTTCTGCACAAGCAGCATCAGTTAAAGGTTTGAAAGGCCGGAAAACACTGAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGAAAGGAAGAGAGGGATGTGGTCACTTTTCCTGGATTTGTAGATTGTGTATACCTGGACGCCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCATGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGGTAATAAACCTCTCTGTTTCTTCAGTACTGACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

190

Amino Acids

21.23

Weight (kDa)

4.9

Isoelectric Point (pI)

17.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 1 - 179 2e-23 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 225
AclWI GGATC 3 cut(s) 62, 299, 305
AcuI CTGAAG 2 cut(s) 226, 540
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 3 cut(s) 143, 223, 561
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 134, 280
AjnI CCWGG 2 cut(s) 361, 384
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 3 cut(s) 62, 299, 305
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 4, 7, 229, 260
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 4 cut(s) 16, 19, 216, 272
BccI CCATC 2 cut(s) 89, 484
BciT130I CCWGG 2 cut(s) 363, 386
BfaI CTAG 1 cut(s) 29
BisI GCNGC 4 cut(s) 5, 8, 230, 261
BlsI GCNGC 4 cut(s) 6, 9, 231, 262
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 363, 386
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 476
BmrFI CCNGG 2 cut(s) 363, 386
BmsI GCATC 2 cut(s) 272, 415
Bpu10I CCTNAGC 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 363, 386
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 16, 19, 216, 272
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 39, 67, 304, 310
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 285
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 476
BspPI GGATC 3 cut(s) 62, 299, 305
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 38
BssMI GATC 4 cut(s) 39, 67, 304, 310
BssNAI GTATAC 1 cut(s) 382
BssNI GRCGYC 1 cut(s) 390
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 2 cut(s) 363, 386
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 206, 499
BstDEI CTNAG 1 cut(s) 421
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 42, 70, 307, 313
BstMBI GATC 4 cut(s) 39, 67, 304, 310
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 363, 386
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 361, 384
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 16, 19, 216, 272
BstX2I RGATCY 2 cut(s) 67, 304
BstYI RGATCY 2 cut(s) 67, 304
BstZ17I GTATAC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 250, 293
Cac8I GCNNGC 2 cut(s) 206, 499
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 2 cut(s) 398, 470
Csp6I GTAC 3 cut(s) 142, 222, 560
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 11, 115, 498
CviJI RGCY 5 cut(s) 137, 168, 208, 285, 420
CviKI_1 RGCY 5 cut(s) 137, 168, 208, 285, 420
CviQI GTAC 3 cut(s) 142, 222, 560
DdeI CTNAG 1 cut(s) 421
DpnI GATC 4 cut(s) 41, 69, 306, 312
DpnII GATC 4 cut(s) 39, 67, 304, 310
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 226, 540
EcoRII CCWGG 2 cut(s) 361, 384
FaeI CATG 3 cut(s) 14, 118, 501
FaiI YATR 8 cut(s) 12, 116, 234, 382, 431, 472, 481, 499
FatI CATG 3 cut(s) 10, 114, 497
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 5, 8, 230, 261
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 5, 8, 230, 261
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 228
GluI GCNGC 4 cut(s) 5, 8, 230, 261
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 286
HgaI GACGC 2 cut(s) 398, 470
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 3 cut(s) 14, 118, 501
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 47, 319
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 52, 460, 486
Hpy188III TCNNGA 4 cut(s) 29, 308, 410, 442
Hpy8I GTNNAC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 8 cut(s) 4, 20, 61, 157, 232, 254, 406, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 421
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 3 cut(s) 14, 118, 501
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 4 cut(s) 39, 67, 304, 310
LpnPI CCDG 8 cut(s) 19, 299, 321, 348, 371, 375, 398, 518
Lsp1109I GCAGC 4 cut(s) 16, 19, 216, 272
LweI GCATC 2 cut(s) 272, 415
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 41, 69, 306, 312
MboI GATC 4 cut(s) 39, 67, 304, 310
MboII GAAGA 2 cut(s) 350, 546
MflI RGATCY 2 cut(s) 67, 304
MluCI AATT 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 3 cut(s) 322, 336, 554
MseI TTAA 3 cut(s) 77, 189, 270
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 2 cut(s) 363, 386
MvaI CCWGG 2 cut(s) 363, 386
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 4 cut(s) 39, 67, 304, 310
NlaIII CATG 3 cut(s) 14, 118, 501
NlaIV GGNNCC 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 47, 319
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 4 cut(s) 6, 9, 231, 262
Ple19I CGATCG 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 361, 384
PspGI CCWGG 2 cut(s) 361, 384
PspN4I GGNNCC 1 cut(s) 476
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 2 cut(s) 67, 304
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 3 cut(s) 143, 223, 561
RsaNI GTAC 3 cut(s) 142, 222, 560
SaqAI TTAA 3 cut(s) 77, 189, 270
SatI GCNGC 4 cut(s) 5, 8, 230, 261
Sau3AI GATC 4 cut(s) 39, 67, 304, 310
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 363, 386
SetI ASST 6 cut(s) 139, 277, 387, 427, 537, 546
SfaNI GCATC 2 cut(s) 272, 415
SinI GGWCC 1 cut(s) 98
SphI GCATGC 1 cut(s) 501
Sse9I AATT 1 cut(s) 451
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 361, 384
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 38, 411
TasI AATT 1 cut(s) 451
TatI WGTACW 2 cut(s) 141, 559
TfiI GAWTC 2 cut(s) 47, 319
Tru1I TTAA 3 cut(s) 77, 189, 270
Tru9I TTAA 3 cut(s) 77, 189, 270
TscAI CASTG 2 cut(s) 250, 300
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 4, 7, 229, 260
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 250, 300
VpaK11BI GGWCC 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.