Rroxscaffold_2G00141510

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008798
Physical Location & Seq
Forward (+)
79770214 .. 79773829
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141510.1

Sequence Viewer

Length: 870 bp
ATGGCGATGGCTTCTATGCACATTTCACTCCCTACCCTCACTCCACCAAACCTTCGGCGACTCAATCGTGAGGCAGATGTGTATCTATTCGGTGGATGTGTTACTTCTTGGAAAGTTCCAAACGGGAAAGACCTCCTTTTTGTCAGACCTGATGCTGTGTTTAATGGGAAGAAACCGATCAGATTGGGATTTTCGTCAGATACTGATTATATCTCTCTTCGGATAGTGGAGGAGTTCCACATTGTTTCCCACAGTTTGGACCCGGCCCGATGCAGCAGAAATCTGGACTGGTCAATTGTTGATTCTGAAAATGTGCAAGGAGATCCTGTCTTAACTTTAGAACTGAAAGATGGTCCTTACAGTCGTGCCATGTGGGATTTCAGCTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTTAGTACCGCGCTGCATTCTTACTTCAGTGCTTCTGCACAAGCGGCATCAGTTAAAGGTTTGAAAGGCCGCAAAACACTAAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGCAAGGAAGAAAGGGATGCGGTCACGTTTCCTGGATTTGTGGATTGTGTATACCTGGATGCCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCGTGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGATTGGAAATGTTCAGCTAGAGCCTGGACAAGTAAAGCTTACTATACGCTTTCAACTTGAGAGGCTTACTACTGTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

289

Amino Acids

32.44

Weight (kDa)

5.99

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 22 - 274 1e-28 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AccI GTMKAC 1 cut(s) 636
AccII CGCG 1 cut(s) 482
AciI CCGC 4 cut(s) 480, 515, 541, 605
AclWI GGATC 3 cut(s) 317, 554, 560
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 2 cut(s) 398, 478
AfiI CCNNNNNNNGG 2 cut(s) 256, 584
AgsI TTSAA 3 cut(s) 389, 535, 842
AjnI CCWGG 3 cut(s) 616, 639, 811
AluBI AGCT 4 cut(s) 384, 392, 805, 826
AluI AGCT 4 cut(s) 384, 392, 805, 826
AlwI GGATC 3 cut(s) 317, 554, 560
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 264, 538
ApeKI GCWGC 2 cut(s) 273, 484
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 3 cut(s) 259, 265, 353
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 692
AvaII GGWCC 2 cut(s) 259, 353
BbvI GCAGC 2 cut(s) 285, 471
BccI CCATC 2 cut(s) 344, 739
BciT130I CCWGG 3 cut(s) 618, 641, 813
BcnI CCSGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 806
BisI GCNGC 4 cut(s) 274, 485, 516, 541
BlsI GCNGC 4 cut(s) 275, 486, 517, 542
Bme1390I CCNGG 4 cut(s) 263, 618, 641, 813
Bme18I GGWCC 2 cut(s) 259, 353
BmgT120I GGNCC 3 cut(s) 259, 265, 353
BmiI GGNNCC 2 cut(s) 261, 731
BmrFI CCNGG 4 cut(s) 263, 618, 641, 813
BmsI GCATC 6 cut(s) 142, 260, 527, 592, 634, 670
Bpu10I CCTNAGC 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 1 cut(s) 263
BsaBI GATNNNNATC 2 cut(s) 81, 564
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 584
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 2 cut(s) 81, 564
BseBI CCWGG 3 cut(s) 618, 641, 813
BseGI GGATG 3 cut(s) 101, 607, 649
BseJI GATNNNNATC 2 cut(s) 81, 564
BseLI CCNNNNNNNGG 2 cut(s) 256, 584
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 285, 471
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 482
BshFI GGCC 2 cut(s) 266, 540
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 256, 584
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 266, 540
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 177, 322, 559, 565
BspACI CCGC 4 cut(s) 480, 515, 541, 605
BspANI GGCC 2 cut(s) 266, 540
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 2 cut(s) 261, 731
BspPI GGATC 3 cut(s) 317, 554, 560
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 1 cut(s) 293
BssMI GATC 4 cut(s) 177, 322, 559, 565
BssNAI GTATAC 1 cut(s) 637
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 618, 641, 813
Bst4CI ACNGT 3 cut(s) 254, 362, 862
Bst6I CTCTTC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 461, 754
BstDEI CTNAG 1 cut(s) 676
BstF5I GGATG 3 cut(s) 101, 607, 649
BstFNI CGCG 1 cut(s) 482
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 4 cut(s) 180, 325, 562, 568
BstMBI GATC 4 cut(s) 177, 322, 559, 565
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 3 cut(s) 618, 641, 813
BstSCI CCNGG 4 cut(s) 261, 616, 639, 811
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 285, 471
BstX2I RGATCY 2 cut(s) 322, 559
BstYI RGATCY 2 cut(s) 322, 559
BstZ17I GTATAC 1 cut(s) 637
BsuRI GGCC 2 cut(s) 266, 540
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 101, 607, 649
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 461, 754
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 3 cut(s) 259, 265, 353
CseI GACGC 1 cut(s) 725
Csp6I GTAC 2 cut(s) 397, 477
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 1 cut(s) 370
CviQI GTAC 2 cut(s) 397, 477
DdeI CTNAG 1 cut(s) 676
DpnI GATC 4 cut(s) 179, 324, 561, 567
DpnII GATC 4 cut(s) 177, 322, 559, 565
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 259, 353
Eco57I CTGAAG 1 cut(s) 481
EcoRII CCWGG 3 cut(s) 616, 639, 811
FaeI CATG 1 cut(s) 373
FaiI YATR 8 cut(s) 17, 210, 371, 637, 686, 727, 736, 833
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 810, 842
FatI CATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 274, 485, 516, 541
FokI GGATG 3 cut(s) 108, 614, 656
Fsp4HI GCNGC 4 cut(s) 274, 485, 516, 541
FspBI CTAG 1 cut(s) 806
GlaI GCGC 1 cut(s) 483
GluI GCNGC 4 cut(s) 274, 485, 516, 541
HaeIII GGCC 2 cut(s) 266, 540
HapII CCGG 1 cut(s) 263
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 484
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HindIII AAGCTT 2 cut(s) 390, 824
HinfI GANTC 3 cut(s) 60, 302, 574
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 7 cut(s) 146, 182, 199, 222, 307, 715, 741
Hpy188III TCNNGA 5 cut(s) 68, 284, 563, 665, 697
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 254, 362, 862
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 8 cut(s) 19, 273, 316, 412, 487, 509, 661, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 1 cut(s) 676
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 482
Kzo9I GATC 4 cut(s) 177, 322, 559, 565
Lsp1109I GCAGC 2 cut(s) 285, 471
LweI GCATC 6 cut(s) 142, 260, 527, 592, 634, 670
MaeI CTAG 1 cut(s) 806
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 2 cut(s) 100, 607
MalI GATC 4 cut(s) 179, 324, 561, 567
MboI GATC 4 cut(s) 177, 322, 559, 565
MboII GAAGA 3 cut(s) 181, 209, 605
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 322, 559
MluCI AATT 2 cut(s) 294, 706
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 6 cut(s) 47, 64, 143, 223, 577, 843
MseI TTAA 4 cut(s) 162, 332, 444, 525
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 263, 618, 641, 813
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 3 cut(s) 618, 641, 813
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 263
NdeII GATC 4 cut(s) 177, 322, 559, 565
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 261, 731
NmuCI GTSAC 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 302, 574
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 4 cut(s) 275, 486, 517, 542
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 616, 639, 811
PspGI CCWGG 3 cut(s) 616, 639, 811
PspN4I GGNNCC 2 cut(s) 261, 731
PspPI GGNCC 3 cut(s) 259, 265, 353
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 322, 559
RsaI GTAC 2 cut(s) 398, 478
RsaNI GTAC 2 cut(s) 397, 477
SaqAI TTAA 4 cut(s) 162, 332, 444, 525
SatI GCNGC 4 cut(s) 274, 485, 516, 541
Sau3AI GATC 4 cut(s) 177, 322, 559, 565
Sau96I GGNCC 3 cut(s) 259, 265, 353
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 4 cut(s) 263, 618, 641, 813
SfaNI GCATC 6 cut(s) 142, 260, 527, 592, 634, 670
SinI GGWCC 2 cut(s) 259, 353
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 2 cut(s) 294, 706
SsiI CCGC 4 cut(s) 480, 515, 541, 605
SspMI CTAG 1 cut(s) 806
StyD4I CCNGG 4 cut(s) 261, 616, 639, 811
TaaI ACNGT 3 cut(s) 254, 362, 862
TaiI ACGT 1 cut(s) 614
TaqI TCGA 2 cut(s) 666, 865
TasI AATT 2 cut(s) 294, 706
TatI WGTACW 1 cut(s) 396
TauI GCSGC 2 cut(s) 518, 543
TfiI GAWTC 2 cut(s) 302, 574
Tru1I TTAA 4 cut(s) 162, 332, 444, 525
Tru9I TTAA 4 cut(s) 162, 332, 444, 525
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 273, 484
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 505
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 259, 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.