RchiOBHm_Chr2g0101191

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008798
Physical Location & Seq
Reverse (-)
12864402 .. 12868137
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47581

Sequence Viewer

Length: 954 bp
ATGGCGATGGCTTCTATGCACATTTCACTCCCTACCCTCACTCCACCAAACCTTCGCCGACTCAATCGGTATTGTTATCAAAGGTCGCCTGTTGTTGCTATGGCCAGTTCATACAAGGAGATTGCTACCTCTGGAGTGAAGGTTACAGAAGGAGAAGGAAGCTTACCCAAGGTTGTTCTGACCGGTTCCAATGGCAGTGAGGCAGATGTGTATCTATTCGGTGGTTGCGTTACGTCGTGGAAAGTCCCAAATGGGAAAAACCTGCTTTTTGTGAGACCTGATGCTGTGTTTAATGGGAAGAAACCGATCAGTGGAGGAGTTCCACATTGTTTCCCACAGTTTGGACCCGGCCCGATGCAGCAGCATGGATTTGCAAGAAATCTAGACTGGTCGATCGTTGATTCTGAAAATGTGCAAGGAGATCCTATCTTAACTTTAGAACTGAAAGATGGTCCTTACAGTCGTGCCTTGTGGGATTTCAGTTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTCAGTACCGCGCTGCATACTTACTTCAGTGCTTCTGCACAAGCAGCATCAGTTAAAGGTTTGAAAGGCCGGAAAACACTGAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGAAAGGAAGAGAGGGATGTGGTCACTTTTCCTGGATTTGTAGATTGTGTATACCTGGATGCCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCATGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGATTGGAAATGTTCAGCTAGAACCTGGTAACTCTTGGACTGCTACACAACATCTCAGCATCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

317

Amino Acids

34.81

Weight (kDa)

6.09

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 57 - 314 1e-44 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 735
AccII CGCG 1 cut(s) 581
AciI CCGC 1 cut(s) 579
AclWI GGATC 3 cut(s) 416, 653, 659
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 580
AfaI GTAC 2 cut(s) 497, 577
AfiI CCNNNNNNNGG 3 cut(s) 311, 341, 683
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 488, 634
AjnI CCWGG 3 cut(s) 715, 738, 910
AluBI AGCT 3 cut(s) 162, 491, 904
AluI AGCT 3 cut(s) 162, 491, 904
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 3 cut(s) 416, 653, 659
AoxI GGCC 3 cut(s) 102, 349, 637
ApeKI GCWGC 4 cut(s) 358, 361, 583, 614
AsiGI ACCGGT 1 cut(s) 182
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 3 cut(s) 344, 350, 452
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 791
AvaII GGWCC 2 cut(s) 344, 452
BalI TGGCCA 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbvI GCAGC 4 cut(s) 370, 373, 570, 626
BccI CCATC 2 cut(s) 443, 838
BciT130I CCWGG 3 cut(s) 717, 740, 912
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 383, 905
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 4 cut(s) 359, 362, 584, 615
BlsI GCNGC 4 cut(s) 360, 363, 585, 616
Bme1390I CCNGG 4 cut(s) 348, 717, 740, 912
Bme18I GGWCC 2 cut(s) 344, 452
BmgT120I GGNCC 3 cut(s) 344, 350, 452
BmiI GGNNCC 3 cut(s) 187, 346, 830
BmrFI CCNGG 4 cut(s) 348, 717, 740, 912
BmsI GCATC 5 cut(s) 271, 345, 626, 733, 769
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 775
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 2 cut(s) 210, 663
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 341, 683
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 105, 392
Bse8I GATNNNNATC 2 cut(s) 210, 663
BseBI CCWGG 3 cut(s) 717, 740, 912
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 706, 748
BseJI GATNNNNATC 2 cut(s) 210, 663
BseLI CCNNNNNNNGG 3 cut(s) 311, 341, 683
BseNI ACTGG 2 cut(s) 105, 392
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 370, 373, 570, 626
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 581
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 104, 351, 639
BshTI ACCGGT 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 183, 348, 640
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 311, 341, 683
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 3 cut(s) 104, 351, 639
Bso31I GGTCTC 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 5 cut(s) 306, 393, 421, 658, 664
BspACI CCGC 1 cut(s) 579
BspANI GGCC 3 cut(s) 104, 351, 639
BspCNI CTCAG 1 cut(s) 954
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 3 cut(s) 187, 346, 830
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 416, 653, 659
BspTNI GGTCTC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 105, 392
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 5 cut(s) 306, 393, 421, 658, 664
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 3 cut(s) 717, 740, 912
Bst4CI ACNGT 2 cut(s) 339, 461
Bst6I CTCTTC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 560, 853
BstDEI CTNAG 2 cut(s) 775, 941
BstF5I GGATG 2 cut(s) 706, 748
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 5 cut(s) 309, 396, 424, 661, 667
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 5 cut(s) 306, 393, 421, 658, 664
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 3 cut(s) 717, 740, 912
BstNSI RCATGY 1 cut(s) 855
BstSCI CCNGG 4 cut(s) 346, 715, 738, 910
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 4 cut(s) 370, 373, 570, 626
BstX2I RGATCY 2 cut(s) 421, 658
BstYI RGATCY 2 cut(s) 421, 658
BstZ17I GTATAC 1 cut(s) 736
BsuRI GGCC 3 cut(s) 104, 351, 639
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 706, 748
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 202, 316, 604, 647
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 560, 853
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 344, 350, 452
CseI GACGC 1 cut(s) 824
CsiI ACCWGGT 1 cut(s) 910
Csp6I GTAC 2 cut(s) 496, 576
CspAI ACCGGT 1 cut(s) 182
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 2 cut(s) 365, 852
CviQI GTAC 2 cut(s) 496, 576
DdeI CTNAG 2 cut(s) 775, 941
DpnI GATC 5 cut(s) 308, 395, 423, 660, 666
DpnII GATC 5 cut(s) 306, 393, 421, 658, 664
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 344, 452
Eco57I CTGAAG 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 715, 738, 910
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 368, 855
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 364, 851
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 359, 362, 584, 615
FokI GGATG 2 cut(s) 713, 755
Fsp4HI GCNGC 4 cut(s) 359, 362, 584, 615
FspBI CTAG 2 cut(s) 383, 905
GlaI GCGC 1 cut(s) 582
GluI GCNGC 4 cut(s) 359, 362, 584, 615
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 104, 351, 639
HapII CCGG 3 cut(s) 183, 348, 640
HgaI GACGC 1 cut(s) 824
HhaI GCGC 1 cut(s) 583
Hin1II CATG 2 cut(s) 368, 855
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HindIII AAGCTT 2 cut(s) 160, 489
HinfI GANTC 3 cut(s) 60, 401, 673
HpaII CCGG 3 cut(s) 183, 348, 640
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 4 cut(s) 180, 406, 814, 840
Hpy188III TCNNGA 5 cut(s) 132, 383, 662, 764, 796
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 4 cut(s) 62, 133, 143, 149
HpyCH4III ACNGT 2 cut(s) 339, 461
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 9 cut(s) 19, 358, 374, 415, 511, 586, 608, 760, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 2 cut(s) 775, 941
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 2 cut(s) 368, 855
HspAI GCGC 1 cut(s) 581
Kzo9I GATC 5 cut(s) 306, 393, 421, 658, 664
Lsp1109I GCAGC 4 cut(s) 370, 373, 570, 626
LweI GCATC 5 cut(s) 271, 345, 626, 733, 769
MabI ACCWGGT 1 cut(s) 910
MaeI CTAG 2 cut(s) 383, 905
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 4 cut(s) 142, 229, 706, 914
MalI GATC 5 cut(s) 308, 395, 423, 660, 666
MboI GATC 5 cut(s) 306, 393, 421, 658, 664
MboII GAAGA 2 cut(s) 310, 704
MflI RGATCY 2 cut(s) 421, 658
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 1 cut(s) 805
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 6 cut(s) 47, 139, 193, 308, 676, 690
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 4 cut(s) 291, 431, 543, 624
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 3 cut(s) 183, 348, 640
MspR9I CCNGG 4 cut(s) 348, 717, 740, 912
MvaI CCWGG 3 cut(s) 717, 740, 912
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 348
NdeII GATC 5 cut(s) 306, 393, 421, 658, 664
NlaIII CATG 2 cut(s) 368, 855
NlaIV GGNNCC 3 cut(s) 187, 346, 830
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 855
PaeI GCATGC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 2 cut(s) 401, 673
PflMI CCANNNNNTGG 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 715
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 4 cut(s) 360, 363, 585, 616
Ple19I CGATCG 1 cut(s) 396
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 715, 738, 910
PspGI CCWGG 3 cut(s) 715, 738, 910
PspN4I GGNNCC 3 cut(s) 187, 346, 830
PspPI GGNCC 3 cut(s) 344, 350, 452
PsuI RGATCY 2 cut(s) 421, 658
PvuI CGATCG 1 cut(s) 396
RsaI GTAC 2 cut(s) 497, 577
RsaNI GTAC 2 cut(s) 496, 576
SaqAI TTAA 4 cut(s) 291, 431, 543, 624
SatI GCNGC 4 cut(s) 359, 362, 584, 615
Sau3AI GATC 5 cut(s) 306, 393, 421, 658, 664
Sau96I GGNCC 3 cut(s) 344, 350, 452
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 4 cut(s) 348, 717, 740, 912
SexAI ACCWGGT 1 cut(s) 910
SfaNI GCATC 5 cut(s) 271, 345, 626, 733, 769
SinI GGWCC 2 cut(s) 344, 452
SphI GCATGC 1 cut(s) 855
Sse9I AATT 1 cut(s) 805
SsiI CCGC 1 cut(s) 579
SspMI CTAG 2 cut(s) 383, 905
StyD4I CCNGG 4 cut(s) 346, 715, 738, 910
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 339, 461
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 392, 765, 948
TasI AATT 1 cut(s) 805
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 2 cut(s) 401, 673
Tru1I TTAA 4 cut(s) 291, 431, 543, 624
Tru9I TTAA 4 cut(s) 291, 431, 543, 624
TscAI CASTG 4 cut(s) 202, 316, 604, 654
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 4 cut(s) 358, 361, 583, 614
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 2 cut(s) 99, 558
TspRI CASTG 4 cut(s) 202, 316, 604, 654
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 344, 452
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 1 cut(s) 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 2 cut(s) 383, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.