Rw2G011310

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008798
Physical Location & Seq
Reverse (-)
11414298 .. 11419253
4956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011310.1

Sequence Viewer

Length: 924 bp
ATGAGAAGAACTTGCCACTTGTATGAGTGTGGCTTACACACACTCAGCTACACACAAAAAAGGTCCCCTGTTATTGCTATGGCCAGTTCATACAAGGAGATTGCTACTTCTGGAGTGAAGGTTACAGAAGGAGAAGGAAGCTTACCCAAGGTCGTTTTGACCGGGTCAAATGGCAGTGAGGCAGATGTGTATCTATTCGGTGGATGTGTTACTTCTTGGAAAGTACCAAATGGGAAAGACCTCCTTTTTGTCAGACCTGATGCTGTGTTTAATGGGAAGAAACCAATCAGTGGAGGAGTTCCACATTGTTTCCCACAGTTTGGACCCGGCCCAATGCAGCAGCATGGATTTGCAAGAAATCTGGACTGGTCGATCGTTGATTCTGAAAATGTGCAAGGAGATCCTGTCTTAACTTTGGAACTGAAAGATGGTCCTTACAGTCGTGCCATGTGGGATTTCAGCTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTCAGTACTGCACTGCATACTTACTTCAGTGCTTCTGCACAAGCGGCATCAGTTAAAGGTTTGAAAGGCCGCAAAACACTAAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGCAAGGAAGAAAGTCACTTTTCCTGGATTTGTGGATTGTGTATACCTGGATGCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCGTGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGATTGGAAATGTTCAGCTAGAGCCTGGTAACTCTTGGACTGCTACACAGCATCTCAGCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

307

Amino Acids

33.7

Weight (kDa)

6.45

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 50 - 200 6.1e-35 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 290, 320
AccI GTMKAC 1 cut(s) 706
AciI CCGC 2 cut(s) 593, 619
AclWI GGATC 3 cut(s) 395, 632, 638
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 559
AfaI GTAC 3 cut(s) 225, 476, 556
AfiI CCNNNNNNNGG 3 cut(s) 290, 320, 662
AgsI TTSAA 2 cut(s) 467, 613
AjnI CCWGG 3 cut(s) 686, 709, 880
AluBI AGCT 5 cut(s) 48, 141, 462, 470, 874
AluI AGCT 5 cut(s) 48, 141, 462, 470, 874
AlwI GGATC 3 cut(s) 395, 632, 638
AoxI GGCC 3 cut(s) 81, 328, 616
ApeKI GCWGC 2 cut(s) 337, 340
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspS9I GGNCC 4 cut(s) 63, 323, 329, 431
AsuC2I CCSGG 2 cut(s) 163, 327
AsuHPI GGTGA 1 cut(s) 761
AvaII GGWCC 3 cut(s) 63, 323, 431
BalI TGGCCA 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbvI GCAGC 2 cut(s) 349, 352
BccI CCATC 2 cut(s) 422, 808
BciT130I CCWGG 3 cut(s) 688, 711, 882
BcnI CCSGG 2 cut(s) 163, 327
BfaI CTAG 1 cut(s) 875
BisI GCNGC 4 cut(s) 338, 341, 594, 619
BlsI GCNGC 4 cut(s) 339, 342, 595, 620
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 5 cut(s) 163, 327, 688, 711, 882
Bme18I GGWCC 3 cut(s) 63, 323, 431
BmgT120I GGNCC 4 cut(s) 63, 323, 329, 431
BmiI GGNNCC 3 cut(s) 65, 325, 800
BmrFI CCNGG 5 cut(s) 163, 327, 688, 711, 882
BmsI GCATC 5 cut(s) 250, 605, 704, 739, 916
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 745
BpuMI CCSGG 2 cut(s) 163, 327
BsaBI GATNNNNATC 2 cut(s) 189, 642
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 390, 420
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 320, 662
Bse1I ACTGG 2 cut(s) 84, 371
Bse8I GATNNNNATC 2 cut(s) 189, 642
BseBI CCWGG 3 cut(s) 688, 711, 882
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 209, 719
BseJI GATNNNNATC 2 cut(s) 189, 642
BseLI CCNNNNNNNGG 3 cut(s) 290, 320, 662
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 84, 371
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 349, 352
BsgI GTGCAG 2 cut(s) 543, 570
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 3 cut(s) 83, 330, 618
BsiEI CGRYCG 1 cut(s) 375
BsiSI CCGG 2 cut(s) 162, 327
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 3 cut(s) 290, 320, 662
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 3 cut(s) 83, 330, 618
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 4 cut(s) 372, 400, 637, 643
BspACI CCGC 2 cut(s) 593, 619
BspANI GGCC 3 cut(s) 83, 330, 618
BspCNI CTCAG 2 cut(s) 57, 924
BspLI GGNNCC 3 cut(s) 65, 325, 800
BspPI GGATC 3 cut(s) 395, 632, 638
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 2 cut(s) 84, 371
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 372, 400, 637, 643
BssNAI GTATAC 1 cut(s) 707
BssT1I CCWWGG 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 707
Bst2UI CCWGG 3 cut(s) 688, 711, 882
Bst4CI ACNGT 2 cut(s) 318, 440
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 539, 823
BstDEI CTNAG 3 cut(s) 44, 745, 911
BstF5I GGATG 2 cut(s) 209, 719
BstKTI GATC 4 cut(s) 375, 403, 640, 646
BstMBI GATC 4 cut(s) 372, 400, 637, 643
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 3 cut(s) 688, 711, 882
BstSCI CCNGG 5 cut(s) 161, 325, 686, 709, 880
BstV1I GCAGC 2 cut(s) 349, 352
BstX2I RGATCY 2 cut(s) 400, 637
BstYI RGATCY 2 cut(s) 400, 637
BstZ17I GTATAC 1 cut(s) 707
BsuRI GGCC 3 cut(s) 83, 330, 618
BtsCI GGATG 2 cut(s) 209, 719
BtsI GCAGTG 2 cut(s) 181, 560
BtsIMutI CAGTG 4 cut(s) 181, 295, 560, 583
Cac8I GCNNGC 2 cut(s) 539, 823
Cfr13I GGNCC 4 cut(s) 63, 323, 329, 431
CseI GACGC 1 cut(s) 794
Csp6I GTAC 3 cut(s) 224, 475, 555
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 2 cut(s) 344, 448
CviQI GTAC 3 cut(s) 224, 475, 555
DdeI CTNAG 3 cut(s) 44, 745, 911
DpnI GATC 4 cut(s) 374, 402, 639, 645
DpnII GATC 4 cut(s) 372, 400, 637, 643
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 3 cut(s) 63, 323, 431
Eco57I CTGAAG 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 686, 709, 880
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 347, 451
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 343, 447
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 4 cut(s) 338, 341, 594, 619
FokI GGATG 2 cut(s) 216, 726
Fsp4HI GCNGC 4 cut(s) 338, 341, 594, 619
FspBI CTAG 1 cut(s) 875
GluI GCNGC 4 cut(s) 338, 341, 594, 619
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 3 cut(s) 83, 330, 618
HapII CCGG 2 cut(s) 162, 327
HgaI GACGC 1 cut(s) 794
Hin1II CATG 2 cut(s) 347, 451
HindIII AAGCTT 2 cut(s) 139, 468
HinfI GANTC 2 cut(s) 380, 652
HpaII CCGG 2 cut(s) 162, 327
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 4 cut(s) 254, 385, 784, 810
Hpy188III TCNNGA 5 cut(s) 111, 362, 641, 734, 766
Hpy8I GTNNAC 1 cut(s) 707
HpyAV CCTTC 3 cut(s) 112, 122, 128
HpyCH4III ACNGT 2 cut(s) 318, 440
HpyCH4V TGCA 9 cut(s) 337, 353, 394, 490, 560, 565, 587, 730, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 3 cut(s) 44, 745, 911
Hsp92II CATG 2 cut(s) 347, 451
Kzo9I GATC 4 cut(s) 372, 400, 637, 643
Lsp1109I GCAGC 2 cut(s) 349, 352
LweI GCATC 5 cut(s) 250, 605, 704, 739, 916
MaeI CTAG 1 cut(s) 875
MaeIII GTNAC 4 cut(s) 121, 208, 677, 884
MalI GATC 4 cut(s) 374, 402, 639, 645
MboI GATC 4 cut(s) 372, 400, 637, 643
MboII GAAGA 3 cut(s) 18, 289, 683
MflI RGATCY 2 cut(s) 400, 637
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 775
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 4 cut(s) 172, 251, 287, 655
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 270, 410, 522, 603
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 162, 327
MspR9I CCNGG 5 cut(s) 163, 327, 688, 711, 882
MvaI CCWGG 3 cut(s) 688, 711, 882
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 2 cut(s) 163, 327
NdeII GATC 4 cut(s) 372, 400, 637, 643
NlaIII CATG 2 cut(s) 347, 451
NlaIV GGNNCC 3 cut(s) 65, 325, 800
NmuCI GTSAC 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 818
PfeI GAWTC 2 cut(s) 380, 652
PflFI GACNNNGTC 1 cut(s) 163
PflMI CCANNNNNTGG 2 cut(s) 290, 320
PfoI TCCNGGA 1 cut(s) 686
PkrI GCNGC 4 cut(s) 339, 342, 595, 620
Ple19I CGATCG 1 cut(s) 375
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 686, 709, 880
PspGI CCWGG 3 cut(s) 686, 709, 880
PspN4I GGNNCC 3 cut(s) 65, 325, 800
PspPI GGNCC 4 cut(s) 63, 323, 329, 431
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 2 cut(s) 400, 637
PsyI GACNNNGTC 1 cut(s) 163
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 3 cut(s) 225, 476, 556
RsaNI GTAC 3 cut(s) 224, 475, 555
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 4 cut(s) 270, 410, 522, 603
SatI GCNGC 4 cut(s) 338, 341, 594, 619
Sau3AI GATC 4 cut(s) 372, 400, 637, 643
Sau96I GGNCC 4 cut(s) 63, 323, 329, 431
ScaI AGTACT 1 cut(s) 556
ScrFI CCNGG 5 cut(s) 163, 327, 688, 711, 882
SfaNI GCATC 5 cut(s) 250, 605, 704, 739, 916
SinI GGWCC 3 cut(s) 63, 323, 431
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 775
SsiI CCGC 2 cut(s) 593, 619
SspMI CTAG 1 cut(s) 875
StyD4I CCNGG 5 cut(s) 161, 325, 686, 709, 880
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 318, 440
TaqI TCGA 2 cut(s) 371, 735
TasI AATT 1 cut(s) 775
TatI WGTACW 2 cut(s) 474, 554
TauI GCSGC 2 cut(s) 596, 621
TfiI GAWTC 2 cut(s) 380, 652
Tru1I TTAA 4 cut(s) 270, 410, 522, 603
Tru9I TTAA 4 cut(s) 270, 410, 522, 603
TscAI CASTG 4 cut(s) 181, 295, 567, 583
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 2 cut(s) 337, 340
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 2 cut(s) 78, 537
TspRI CASTG 4 cut(s) 181, 295, 567, 583
Tth111I GACNNNGTC 1 cut(s) 163
Van91I CCANNNNNTGG 2 cut(s) 290, 320
VpaK11BI GGWCC 3 cut(s) 63, 323, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 706
XspI CTAG 1 cut(s) 875
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.