RLG00000017054

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008798
Physical Location & Seq
Reverse (-)
12434939 .. 12438449
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017054

Sequence Viewer

Length: 711 bp
ATGGCGATGGCTTCTATGCACATTTCACTCCCTACCCTCACTCCACCAAACCTTCGCCGACTCAATCGTGGAGGAGTTCCACATTGTTTCCCACAGTTTGGACCCGGCCCGATGCAGCAGCATGGATTTGCAAGAAATCTGGACTGGTCAATTGTTGATTCTGAAAATGTGCAAGGAGATCCAGTCTTAACTTTAGAACTGAAAGATGGTCCTTACAGTCGTGCCATGTGGGATTTCAGCTTTCAAGCTTTGTACAAGATTACTTTGCAAACAAAGAGCCTTTCCACCGAACTTGTTATTAAAAATACAGACAGCAAGCCATTTTCATTTAGTACCGCGCTGCATACTTACTTCAGTGCTTCTGCACAAGCGGCATCAGTTAAAGGTTTGAAAGGCCGCAAAACACTAAATAAAGATCCTGATCCCAAGAATCCATTGGAGGGCAAGGAAGAAAGGGATGCGGTCACTTTTCCTGGATTTGTGGATTGTGTATACCTGGATGCCCCTAATGAGTTGCATCTCGATAATGGCTTAGGTGATATAATATCTATCAAGAACACAAATTGGTCGGACGCTGTTTTATGGAACCCATATCTGACGATGGAAGCGTGCTACAAGGATTTTGTTTGTGTGGAAAATGCACAGATTGGAAATGTTCAGCTAGAGCCTGGTAACTCTTGGACTGCTACACAACATCTCAGCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

237

Amino Acids

26.2

Weight (kDa)

5.65

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 18 - 233 1.4e-35 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 1 cut(s) 492
AccII CGCG 1 cut(s) 338
AciI CCGC 4 cut(s) 336, 371, 397, 461
AclWI GGATC 3 cut(s) 173, 410, 416
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 2 cut(s) 254, 334
AfiI CCNNNNNNNGG 2 cut(s) 98, 440
AgsI TTSAA 2 cut(s) 245, 391
AjnI CCWGG 3 cut(s) 472, 495, 667
AluBI AGCT 3 cut(s) 240, 248, 661
AluI AGCT 3 cut(s) 240, 248, 661
AlwI GGATC 3 cut(s) 173, 410, 416
AoxI GGCC 2 cut(s) 106, 394
ApeKI GCWGC 3 cut(s) 115, 118, 340
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 101, 107, 209
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 2 cut(s) 101, 209
BbvI GCAGC 3 cut(s) 127, 130, 327
BccI CCATC 2 cut(s) 200, 595
BciT130I CCWGG 3 cut(s) 474, 497, 669
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 662
BisI GCNGC 5 cut(s) 116, 119, 341, 372, 397
BlsI GCNGC 5 cut(s) 117, 120, 342, 373, 398
Bme1390I CCNGG 4 cut(s) 105, 474, 497, 669
Bme18I GGWCC 2 cut(s) 101, 209
BmgT120I GGNCC 3 cut(s) 101, 107, 209
BmiI GGNNCC 2 cut(s) 103, 587
BmrFI CCNGG 4 cut(s) 105, 474, 497, 669
BmsI GCATC 5 cut(s) 102, 383, 448, 490, 526
Bpu10I CCTNAGC 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 420
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 440
Bse1I ACTGG 2 cut(s) 149, 182
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 3 cut(s) 474, 497, 669
BseGI GGATG 2 cut(s) 463, 505
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 98, 440
BseNI ACTGG 2 cut(s) 149, 182
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 127, 130, 327
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 108, 396
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 98, 440
BsnI GGCC 2 cut(s) 108, 396
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 178, 415, 421
BspACI CCGC 4 cut(s) 336, 371, 397, 461
BspANI GGCC 2 cut(s) 108, 396
BspCNI CTCAG 1 cut(s) 711
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 103, 587
BspPI GGATC 3 cut(s) 173, 410, 416
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 2 cut(s) 149, 182
BssMI GATC 3 cut(s) 178, 415, 421
BssNAI GTATAC 1 cut(s) 493
Bst1107I GTATAC 1 cut(s) 493
Bst2UI CCWGG 3 cut(s) 474, 497, 669
Bst4CI ACNGT 2 cut(s) 96, 218
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 317, 610
BstDEI CTNAG 2 cut(s) 532, 698
BstF5I GGATG 2 cut(s) 463, 505
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 3 cut(s) 181, 418, 424
BstMBI GATC 3 cut(s) 178, 415, 421
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 3 cut(s) 474, 497, 669
BstSCI CCNGG 4 cut(s) 103, 472, 495, 667
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 127, 130, 327
BstX2I RGATCY 2 cut(s) 178, 415
BstYI RGATCY 2 cut(s) 178, 415
BstZ17I GTATAC 1 cut(s) 493
BsuRI GGCC 2 cut(s) 108, 396
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 463, 505
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 317, 610
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 101, 107, 209
CseI GACGC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 253, 333
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 2 cut(s) 122, 226
CviQI GTAC 2 cut(s) 253, 333
DdeI CTNAG 2 cut(s) 532, 698
DpnI GATC 3 cut(s) 180, 417, 423
DpnII GATC 3 cut(s) 178, 415, 421
Eco47I GGWCC 2 cut(s) 101, 209
Eco57I CTGAAG 1 cut(s) 337
EcoRII CCWGG 3 cut(s) 472, 495, 667
FaeI CATG 2 cut(s) 125, 229
FaiI YATR 8 cut(s) 17, 123, 227, 345, 493, 542, 583, 592
FatI CATG 2 cut(s) 121, 225
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 5 cut(s) 116, 119, 341, 372, 397
FokI GGATG 2 cut(s) 470, 512
Fsp4HI GCNGC 5 cut(s) 116, 119, 341, 372, 397
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 339
GluI GCNGC 5 cut(s) 116, 119, 341, 372, 397
HaeIII GGCC 2 cut(s) 108, 396
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 125, 229
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 3 cut(s) 60, 158, 430
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 163, 571, 597
Hpy188III TCNNGA 4 cut(s) 140, 419, 521, 553
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 96, 218
HpyCH4V TGCA 9 cut(s) 19, 115, 131, 172, 268, 343, 365, 517, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 532, 698
Hsp92II CATG 2 cut(s) 125, 229
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 3 cut(s) 178, 415, 421
Lsp1109I GCAGC 3 cut(s) 127, 130, 327
LweI GCATC 5 cut(s) 102, 383, 448, 490, 526
MaeI CTAG 1 cut(s) 662
MaeIII GTNAC 2 cut(s) 463, 671
MalI GATC 3 cut(s) 180, 417, 423
MboI GATC 3 cut(s) 178, 415, 421
MboII GAAGA 1 cut(s) 461
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 178, 415
MluCI AATT 2 cut(s) 150, 562
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 3 cut(s) 47, 65, 433
MseI TTAA 3 cut(s) 188, 300, 381
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 4 cut(s) 105, 474, 497, 669
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 3 cut(s) 474, 497, 669
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 371
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 178, 415, 421
NlaIII CATG 2 cut(s) 125, 229
NlaIV GGNNCC 2 cut(s) 103, 587
NmuCI GTSAC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 605
PfeI GAWTC 2 cut(s) 158, 430
PflMI CCANNNNNTGG 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 5 cut(s) 117, 120, 342, 373, 398
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 472, 495, 667
PspGI CCWGG 3 cut(s) 472, 495, 667
PspN4I GGNNCC 2 cut(s) 103, 587
PspPI GGNCC 3 cut(s) 101, 107, 209
PsuI RGATCY 2 cut(s) 178, 415
RsaI GTAC 2 cut(s) 254, 334
RsaNI GTAC 2 cut(s) 253, 333
SaqAI TTAA 3 cut(s) 188, 300, 381
SatI GCNGC 5 cut(s) 116, 119, 341, 372, 397
Sau3AI GATC 3 cut(s) 178, 415, 421
Sau96I GGNCC 3 cut(s) 101, 107, 209
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 4 cut(s) 105, 474, 497, 669
SetI ASST 7 cut(s) 54, 242, 250, 388, 498, 538, 663
SfaNI GCATC 5 cut(s) 102, 383, 448, 490, 526
SinI GGWCC 2 cut(s) 101, 209
Sse9I AATT 2 cut(s) 150, 562
SsiI CCGC 4 cut(s) 336, 371, 397, 461
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 4 cut(s) 103, 472, 495, 667
TaaI ACNGT 2 cut(s) 96, 218
TaqI TCGA 1 cut(s) 522
TasI AATT 2 cut(s) 150, 562
TatI WGTACW 1 cut(s) 252
TauI GCSGC 2 cut(s) 374, 399
TfiI GAWTC 2 cut(s) 158, 430
Tru1I TTAA 3 cut(s) 188, 300, 381
Tru9I TTAA 3 cut(s) 188, 300, 381
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 115, 118, 340
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 101, 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.