Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010885.1

Orthogroup ID

OG0008798

Physical Location & Seq

Genomic Coordinates Reverse (-)

889 .. 2354

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010885.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggtccttacagtcgtgccatgtgggatttcagctttcaagctttgtacaaggtcagttcacacatctcgatatgaaaatgatgctcgtctagttcaactgattactttgcaaacaaagagcctttccaccgaacttgttattaaaaatacagacagcaagccattttcattcagtaccgcgctgcatacttacttcagtgcttctgcacaagcagcatcagttaaaggtttgaaaggccgcaaaacactaaataaagatcctgatcccaagaatccattggagggcaaggaagaaagggatgcggtcacttttcctggatttgtggattgtgtatacctggatgcccctaatgagttgcatctcgataatggcttaggtgatataatatctatcaagaacacaaattggtcggacgctgttttatggaacccatatctgacgatggaagcgtgctacaaggattttgtttgtgtggaaaatgcacagattggaaatgttcagctagagcctggtaactcttggactgctacacagcatctcagcatcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

184

Amino Acids

20.33

Weight (kDa)

5.78

Isoelectric Point (pI)

16.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66530 AT5G66530 AT5G66530 AT5G66530
fragaria_vesca	FvH4_1g13030
malus_domestica	MD02G1144900.v1.1 MD15G1259100.v1.1
prunus_persica	Prupe.7G156700_v2.0.a1
pyrus_communis	pycom02g11480 pycom15g22730
rosa_chinensis	RchiOBHm_Chr2g0101191
rosa_laevigata	RLG00000017054
rosa_multiflora	Rmu_sc0006314.1_g000006 Rmu_sc0007698.1_g000005 Rmu_sc0010885.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141510
rosa_rugosa	Rorug02G0100300
rosa_samantha	Rh2AG144300 Rh2BG149300 Rh2CG150600 Rh2DG149800 Rh6BG056500
rosa_wichuraiana	Rw2G011310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	1 cut(s)	182
AciI	CCGC	3 cut(s)	180, 241, 305
AclWI	GGATC	2 cut(s)	254, 260
AcuI	CTGAAG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	49, 178
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	40, 98, 235
AjnI	CCWGG	3 cut(s)	316, 339, 511
AluBI	AGCT	3 cut(s)	35, 43, 505
AluI	AGCT	3 cut(s)	35, 43, 505
AlwI	GGATC	2 cut(s)	254, 260
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	184, 215
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	171, 227
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	3 cut(s)	318, 341, 513
BfaI	CTAG	2 cut(s)	92, 506
BisI	GCNGC	3 cut(s)	185, 216, 241
BlsI	GCNGC	3 cut(s)	186, 217, 242
Bme1390I	CCNGG	3 cut(s)	318, 341, 513
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	3 cut(s)	318, 341, 513
BmsI	GCATC	6 cut(s)	73, 227, 292, 334, 370, 547
Bpu10I	CCTNAGC	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	318, 341, 513
BseGI	GGATG	2 cut(s)	307, 349
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	171, 227
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	259, 265
BspACI	CCGC	3 cut(s)	180, 241, 305
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	254, 260
BsrGI	TGTACA	1 cut(s)	47
BssMI	GATC	2 cut(s)	259, 265
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst2UI	CCWGG	3 cut(s)	318, 341, 513
Bst4CI	ACNGT	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	161, 454
BstDEI	CTNAG	2 cut(s)	376, 542
BstF5I	GGATG	2 cut(s)	307, 349
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	262, 268
BstMBI	GATC	2 cut(s)	259, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	3 cut(s)	318, 341, 513
BstSCI	CCNGG	3 cut(s)	316, 339, 511
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	171, 227
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	307, 349
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	161, 454
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	48, 177
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	8 cut(s)	35, 43, 123, 163, 240, 375, 505, 511
CviKI_1	RGCY	8 cut(s)	35, 43, 123, 163, 240, 375, 505, 511
CviQI	GTAC	2 cut(s)	48, 177
DdeI	CTNAG	2 cut(s)	376, 542
DpnI	GATC	2 cut(s)	261, 267
DpnII	GATC	2 cut(s)	259, 265
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	181
EcoRII	CCWGG	3 cut(s)	316, 339, 511
FaeI	CATG	1 cut(s)	24
FaiI	YATR	7 cut(s)	22, 75, 189, 337, 386, 427, 436
FatI	CATG	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	185, 216, 241
FokI	GGATG	2 cut(s)	314, 356
Fsp4HI	GCNGC	3 cut(s)	185, 216, 241
FspBI	CTAG	2 cut(s)	92, 506
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	185, 216, 241
HaeIII	GGCC	1 cut(s)	240
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	61, 337
Hpy188I	TCNGA	2 cut(s)	415, 441
Hpy188III	TCNNGA	4 cut(s)	69, 263, 365, 397
Hpy8I	GTNNAC	2 cut(s)	61, 337
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	5 cut(s)	112, 187, 209, 361, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	376, 542
Hsp92II	CATG	1 cut(s)	24
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	259, 265
LpnPI	CCDG	7 cut(s)	276, 303, 326, 330, 353, 498, 525
Lsp1109I	GCAGC	2 cut(s)	171, 227
LweI	GCATC	6 cut(s)	73, 227, 292, 334, 370, 547
MaeI	CTAG	2 cut(s)	92, 506
MaeIII	GTNAC	2 cut(s)	307, 515
MalI	GATC	2 cut(s)	261, 267
MboI	GATC	2 cut(s)	259, 265
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	1 cut(s)	277
MseI	TTAA	2 cut(s)	144, 225
MspR9I	CCNGG	3 cut(s)	318, 341, 513
MvaI	CCWGG	3 cut(s)	318, 341, 513
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	259, 265
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	186, 217, 242
Psp6I	CCWGG	3 cut(s)	316, 339, 511
PspGI	CCWGG	3 cut(s)	316, 339, 511
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	2 cut(s)	49, 178
RsaNI	GTAC	2 cut(s)	48, 177
SaqAI	TTAA	2 cut(s)	144, 225
SatI	GCNGC	3 cut(s)	185, 216, 241
Sau3AI	GATC	2 cut(s)	259, 265
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	318, 341, 513
SetI	ASST	7 cut(s)	37, 45, 56, 232, 342, 382, 507
SfaNI	GCATC	6 cut(s)	73, 227, 292, 334, 370, 547
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	3 cut(s)	180, 241, 305
SspMI	CTAG	2 cut(s)	92, 506
StyD4I	CCNGG	3 cut(s)	316, 339, 511
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	70, 366
TasI	AATT	1 cut(s)	406
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	144, 225
Tru9I	TTAA	2 cut(s)	144, 225
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	184, 215
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	90, 159
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	2 cut(s)	92, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.