Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

7435788 .. 7436285

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTGCTTCTTACACCAGCATCCACTTCTCTTTTGTCACACCCAGCAAATGGTCGCAATGTCACATACAGAACAAGCACAACCAGATTCCACACCCGACTCAAGGTCATATCCATGGCCAAGCAAACTAGCGAAGAAACCAGCAGCACAACCACAGAGAAAATAGCTATAGCCGGCGGCTTAGTCTCCAACCCTGTCATTGGTTGGTCCCTCTACACTCTCAAGACCACCGGGTGCGGCCTGCCTCCCGGACCCGGCGGCTCCATTGGTGCACTTGAAGGTGTGAGCTACCTAGCTGTGCTGGGAATAGTTGGTTGGTCTTTGTACACCAAGACCAAAACAGGTTCAGGTCTCCCTAATGGACCATTTGGGTTGTTGGGTGCTGTTGAGGGTCTGTCTTACTTGTCTTTGCTTGCCATTTTGGTTGTGTTTGGGATTCAGTTTGTTCAGCAGGGCTCCATTCCAGGACCCCTCCCAACTGATCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.07

Weight (kDa)

9.26

Isoelectric Point (pI)

20.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	3 cut(s)	177, 237, 258
AcoI	YGGCCR	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	50, 103, 200, 254
AgsI	TTSAA	1 cut(s)	278
AhdI	GACNNNNNGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	167, 288, 296
AluI	AGCT	3 cut(s)	167, 288, 296
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	190, 356
Alw44I	GTGCAC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	117, 238
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	144
AspS9I	GGNCC	4 cut(s)	207, 251, 362, 467
AsuC2I	CCSGG	3 cut(s)	232, 249, 255
AvaII	GGWCC	4 cut(s)	207, 251, 362, 467
BaeGI	GKGCMC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	465
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	3 cut(s)	232, 249, 255
BcoDI	GTCTC	2 cut(s)	190, 356
BfaI	CTAG	2 cut(s)	129, 293
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	145, 178, 238, 259
BlsI	GCNGC	4 cut(s)	146, 179, 239, 260
Bme1390I	CCNGG	4 cut(s)	232, 249, 255, 465
Bme18I	GGWCC	4 cut(s)	207, 251, 362, 467
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	207, 251, 362, 467
BmiI	GGNNCC	5 cut(s)	209, 253, 262, 457, 469
BmrFI	CCNGG	4 cut(s)	232, 249, 255, 465
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	86, 206
BpuMI	CCSGG	3 cut(s)	232, 249, 255
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 103, 200, 254
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	4 cut(s)	50, 103, 200, 254
BseMI	GCAATG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	2 cut(s)	43, 301
BshFI	GGCC	2 cut(s)	119, 240
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	4 cut(s)	174, 231, 249, 255
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	50, 103, 200, 254
BsmAI	GTCTC	2 cut(s)	190, 356
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	119, 240
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	274, 458
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	3 cut(s)	177, 237, 258
BspANI	GGCC	2 cut(s)	119, 240
BspLI	GGNNCC	5 cut(s)	209, 253, 262, 457, 469
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	175, 242, 414
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	2 cut(s)	190, 356
BstMBI	GATC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	4 cut(s)	230, 247, 253, 463
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	119, 240
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	3 cut(s)	175, 242, 414
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	207, 251, 362, 467
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	9 cut(s)	119, 167, 173, 180, 240, 261, 288, 296, 456
CviKI_1	RGCY	9 cut(s)	119, 167, 173, 180, 240, 261, 288, 296, 456
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DraIII	CACNNNGTG	1 cut(s)	234
DriI	GACNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	356
Eco47I	GGWCC	4 cut(s)	207, 251, 362, 467
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	67, 110, 116, 170
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	145, 178, 238, 259
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	145, 178, 238, 259
FspBI	CTAG	2 cut(s)	129, 293
GluI	GCNGC	4 cut(s)	145, 178, 238, 259
GsaI	CCCAGC	2 cut(s)	47, 305
HaeIII	GGCC	2 cut(s)	119, 240
HapII	CCGG	4 cut(s)	174, 231, 249, 255
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	3 cut(s)	87, 99, 436
HpaII	CCGG	4 cut(s)	174, 231, 249, 255
Hpy166II	GTNNAC	2 cut(s)	272, 327
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	272, 327
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	266, 461
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	129, 293
MaeIII	GTNAC	2 cut(s)	36, 61
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	274, 458
MlsI	TGGCCA	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	221, 255, 382, 482
Mox20I	TGGCCA	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	4 cut(s)	174, 231, 249, 255
MspR9I	CCNGG	4 cut(s)	232, 249, 255, 465
MvaI	CCWGG	1 cut(s)	465
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	3 cut(s)	232, 249, 255
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	481
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	5 cut(s)	209, 253, 262, 457, 469
NmuCI	GTSAC	2 cut(s)	36, 61
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	87, 436
PflMI	CCANNNNNTGG	1 cut(s)	50
PfoI	TCCNGGA	2 cut(s)	247, 463
PkrI	GCNGC	4 cut(s)	146, 179, 239, 260
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	2 cut(s)	43, 301
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	5 cut(s)	209, 253, 262, 457, 469
PspPI	GGNCC	4 cut(s)	207, 251, 362, 467
PspPPI	RGGWCCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	4 cut(s)	145, 178, 238, 259
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	4 cut(s)	207, 251, 362, 467
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	4 cut(s)	232, 249, 255, 465
SduI	GDGCHC	2 cut(s)	274, 458
SetI	ASST	8 cut(s)	108, 169, 283, 290, 294, 298, 346, 352
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	4 cut(s)	207, 251, 362, 467
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	101, 221
SmoI	CTYRAG	2 cut(s)	101, 221
SsiI	CCGC	3 cut(s)	177, 237, 258
SspMI	CTAG	2 cut(s)	129, 293
StyD4I	CCNGG	4 cut(s)	230, 247, 253, 463
StyI	CCWWGG	1 cut(s)	114
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	3 cut(s)	180, 240, 261
TfiI	GAWTC	2 cut(s)	87, 436
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	2 cut(s)	36, 61
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	36, 61
TspRI	CASTG	1 cut(s)	491
Van91I	CCANNNNNTGG	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	4 cut(s)	207, 251, 362, 467
XspI	CTAG	2 cut(s)	129, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.