Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

12892481 .. 12896790

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTGCTTCTTACACCAGCATCCACTCCTCTATTGTCACACCCAAATGGTCTCACATTTAGAACAAACACAACCAGATTTCAAACCCAACTCAAGGTCTTATCCATGGCCAAGCAAACCAGCGAAGAAACCAGCAGCACCACCATAGAGAAAATAGCCGTAGCCGGCGGCTTAGTCTCCAACCCGGTGATTGGTTGGTCCCTCTACACTCTCAAGACCACCGGGTGTGGCCTGCCTCCCGGACCCGGTGGATCCATCGGTGCACTTGAAGGTGTCAGCTACCTAGCTGTGCTGGGAATAGTGGGTTGGTCTTTGTACACCAAGACCAAAACAGGCTCGGGTCTGCCCAATGGACCATTTGGGTTGCTTGGTGCTGTTGAGGTTAGATTAGAAAACATTACTTGTTCTAGTAGTAATGTGGTAAAGAGAACCATAGAGGTCGCCGATTGCGAAGCGGCCAAAGCCTTTAGCTTGGGCAGTGAGAATTATATCCTTGTATTGTTCAGCACCTACGACTTGGCAAAGCGGAGCAACGCCGCAAGTGATTCGAGATGTAAAATCCTCCAAAATTCCAAAAAGCGCTTTGGACTTATAGTCAAGCTGGGTCTCTCTCTCTCTCTCTCACTCTCTCTCGATCATCACGTCTCTTCAGGTTCGCCGATCGCCGCCGCAGTCCCAATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

23.84

Weight (kDa)

9.34

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	168, 455, 526, 537, 666, 669
AclWI	GGATC	2 cut(s)	246, 259
AcoI	YGGCCR	2 cut(s)	108, 456
AcsI	RAATTY	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	633
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
AgsI	TTSAA	2 cut(s)	83, 269
AhdI	GACNNNNNGTC	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	4 cut(s)	279, 287, 471, 601
AluI	AGCT	4 cut(s)	279, 287, 471, 601
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	4 cut(s)	56, 181, 611, 649
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	246, 259
Ama87I	CYCGRG	1 cut(s)	337
Aor51HI	AGCGCT	1 cut(s)	581
AoxI	GGCC	3 cut(s)	108, 229, 456
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	3 cut(s)	198, 242, 353
AsuC2I	CCSGG	4 cut(s)	185, 223, 240, 246
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	3 cut(s)	198, 242, 353
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BcnI	CCSGG	4 cut(s)	185, 223, 240, 246
BcoDI	GTCTC	4 cut(s)	56, 181, 611, 649
BfaI	CTAG	2 cut(s)	284, 408
BfoI	RGCGCY	1 cut(s)	583
BisI	GCNGC	6 cut(s)	136, 169, 456, 537, 666, 669
BlsI	GCNGC	6 cut(s)	137, 170, 457, 538, 667, 670
Bme1390I	CCNGG	4 cut(s)	185, 223, 240, 246
Bme18I	GGWCC	3 cut(s)	198, 242, 353
BmeRI	GACNNNNNGTC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	643
BmgT120I	GGNCC	3 cut(s)	198, 242, 353
BmiI	GGNNCC	3 cut(s)	200, 244, 253
BmrFI	CCNGG	4 cut(s)	185, 223, 240, 246
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	77, 197
BpuMI	CCSGG	4 cut(s)	185, 223, 240, 246
BsaI	GGTCTC	2 cut(s)	56, 611
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 191, 245
Bse118I	RCCGGY	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	2 cut(s)	292, 601
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	3 cut(s)	110, 231, 458
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	165, 185, 222, 240, 246
BslFI	GGGAC	2 cut(s)	184, 659
BslI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
BsmAI	GTCTC	4 cut(s)	56, 181, 611, 649
BsmBI	CGTCTC	1 cut(s)	649
BsmFI	GGGAC	2 cut(s)	184, 659
BsnI	GGCC	3 cut(s)	110, 231, 458
Bso31I	GGTCTC	2 cut(s)	56, 611
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	251, 634, 660
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	6 cut(s)	168, 455, 526, 537, 666, 669
BspANI	GGCC	3 cut(s)	110, 231, 458
BspLI	GGNNCC	3 cut(s)	200, 244, 253
BspPI	GGATC	2 cut(s)	246, 259
BspTNI	GGTCTC	2 cut(s)	56, 611
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	251, 634, 660
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	652
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	166, 233
BstDEI	CTNAG	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	3 cut(s)	254, 637, 663
BstMAI	GTCTC	4 cut(s)	56, 181, 611, 649
BstMBI	GATC	3 cut(s)	251, 634, 660
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstSCI	CCNGG	4 cut(s)	183, 221, 238, 244
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	110, 231, 458
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	166, 233
CfoI	GCGC	1 cut(s)	582
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	198, 242, 353
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	3 cut(s)	253, 636, 662
DpnII	GATC	3 cut(s)	251, 634, 660
DraIII	CACNNNGTG	1 cut(s)	225
DriI	GACNNNNNGTC	1 cut(s)	593
EaeI	YGGCCR	2 cut(s)	108, 456
Eam1104I	CTCTTC	1 cut(s)	652
Eam1105I	GACNNNNNGTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	56, 611
Eco47I	GGWCC	3 cut(s)	198, 242, 353
Eco47III	AGCGCT	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	1 cut(s)	109
FaiI	YATR	5 cut(s)	107, 146, 434, 489, 593
FaqI	GGGAC	2 cut(s)	184, 659
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	136, 169, 456, 537, 666, 669
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	6 cut(s)	136, 169, 456, 537, 666, 669
FspBI	CTAG	2 cut(s)	284, 408
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	6 cut(s)	136, 169, 456, 537, 666, 669
GsaI	CCCAGC	2 cut(s)	296, 605
HaeII	RGCGCY	1 cut(s)	583
HaeIII	GGCC	3 cut(s)	110, 231, 458
HapII	CCGG	5 cut(s)	165, 185, 222, 240, 246
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	5 cut(s)	165, 185, 222, 240, 246
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	263, 318
Hpy188III	TCNNGA	3 cut(s)	214, 549, 632
Hpy8I	GTNNAC	2 cut(s)	263, 318
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	580
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	251, 634, 660
LmnI	GCTCC	1 cut(s)	528
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	284, 408
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	3 cut(s)	253, 636, 662
MboI	GATC	3 cut(s)	251, 634, 660
MboII	GAAGA	2 cut(s)	137, 639
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	2 cut(s)	484, 568
MluNI	TGGCCA	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	39, 212, 246, 373, 430, 572
Mox20I	TGGCCA	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	1 cut(s)	685
MslI	CAYNNNNRTG	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	5 cut(s)	165, 185, 222, 240, 246
MspR9I	CCNGG	4 cut(s)	185, 223, 240, 246
MwoI	GCNNNNNNNGC	1 cut(s)	461
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	4 cut(s)	185, 223, 240, 246
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	251, 634, 660
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	200, 244, 253
NmuCI	GTSAC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 639
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	137, 170, 457, 538, 667, 670
Ple19I	CGATCG	1 cut(s)	663
PspFI	CCCAGC	2 cut(s)	292, 601
PspN4I	GGNNCC	3 cut(s)	200, 244, 253
PspPI	GGNCC	3 cut(s)	198, 242, 353
PsuI	RGATCY	1 cut(s)	251
PvuI	CGATCG	1 cut(s)	663
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	685
SatI	GCNGC	6 cut(s)	136, 169, 456, 537, 666, 669
Sau3AI	GATC	3 cut(s)	251, 634, 660
Sau96I	GGNCC	3 cut(s)	198, 242, 353
ScrFI	CCNGG	4 cut(s)	185, 223, 240, 246
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	3 cut(s)	198, 242, 353
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	92, 212
SmoI	CTYRAG	2 cut(s)	92, 212
Sse9I	AATT	2 cut(s)	484, 568
SsiI	CCGC	6 cut(s)	168, 455, 526, 537, 666, 669
SspMI	CTAG	2 cut(s)	284, 408
StyD4I	CCNGG	4 cut(s)	183, 221, 238, 244
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	2 cut(s)	548, 633
TasI	AATT	2 cut(s)	484, 568
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	5 cut(s)	171, 458, 539, 668, 671
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	685
Tru9I	TTAA	1 cut(s)	685
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	36
TspRI	CASTG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	3 cut(s)	198, 242, 353
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	2 cut(s)	284, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.