Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

12360051 .. 12361892

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGCTAATTTGTCCAGCATCCCCCTCTCTATTTCCAAACCCACTTCACAATTTCAATGCCAAACACAAAACAACCAGATTCCAATCCCCACTGAAAATCTCAGCCAAGGCAAAACAAACCAGCGACGACAGCACCACCAGCATTGCGGAGATAGCAGCCTTCGCTGGAGGCTTGGTTTCCACCCCAGTGATTGGCTGGTCCCTCTACACTCTCAAAACAACCGGGTGCGGCCTGCCACCCGGACCGGGTGGTTCCATCGGTGCACTCGAAGGAGTTAGCTACTTGGCCGTCCTGGGAATTGTGGGTTGGTCCTTGTACACCAAAACCAAAACCGGGTCCGGTCTGCCCAACGGACCGTTTGGACTGCTGGGTGCTGTTGAAGGTCTGTCTTACTTGTCATTGCTCTCCATTCTGGTGGTGTTTGGGTTGCAGTTTTTTCAGAATGGCTCCATTCCTGGTCCTCTTCCAAGTGATCAGTGCTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

16.8

Weight (kDa)

8.84

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AciI	CCGC	2 cut(s)	149, 231
AcoI	YGGCCR	1 cut(s)	288
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	194, 248, 336
AgsI	TTSAA	2 cut(s)	58, 383
AjnI	CCWGG	2 cut(s)	294, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw21I	GWGCWC	1 cut(s)	268
Alw44I	GTGCAC	1 cut(s)	264
AoxI	GGCC	2 cut(s)	232, 288
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	6 cut(s)	201, 245, 312, 339, 356, 461
AsuC2I	CCSGG	4 cut(s)	226, 243, 249, 337
AvaII	GGWCC	6 cut(s)	201, 245, 312, 339, 356, 461
BaeGI	GKGCMC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	296, 459
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	4 cut(s)	226, 243, 249, 337
BisI	GCNGC	2 cut(s)	159, 232
BlsI	GCNGC	2 cut(s)	160, 233
Bme1390I	CCNGG	6 cut(s)	226, 243, 249, 296, 337, 459
Bme18I	GGWCC	6 cut(s)	201, 245, 312, 339, 356, 461
BmgT120I	GGNCC	6 cut(s)	201, 245, 312, 339, 356, 461
BmiI	GGNNCC	4 cut(s)	203, 256, 340, 451
BmrFI	CCNGG	6 cut(s)	226, 243, 249, 296, 337, 459
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	4 cut(s)	226, 243, 249, 337
BsaBI	GATNNNNATC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	108, 295
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 248, 336
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	144, 401
Bse8I	GATNNNNATC	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	296, 459
BseDI	CCNNGG	2 cut(s)	108, 295
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	194, 248, 336
BseMI	GCAATG	2 cut(s)	144, 401
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	2 cut(s)	234, 290
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	5 cut(s)	225, 243, 248, 336, 342
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	194, 248, 336
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	234, 290
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	2 cut(s)	149, 231
BspANI	GGCC	2 cut(s)	234, 290
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	4 cut(s)	203, 256, 340, 451
BsrDI	GCAATG	2 cut(s)	144, 401
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	108, 295
BssMI	GATC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	296, 459
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	471
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	478
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 141, 155, 164
BstNI	CCWGG	2 cut(s)	296, 459
BstSCI	CCNGG	6 cut(s)	224, 241, 247, 294, 335, 457
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	234, 290
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	92, 195, 485
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	6 cut(s)	201, 245, 312, 339, 356, 461
CpoI	CGGWCCG	2 cut(s)	245, 356
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CspI	CGGWCCG	2 cut(s)	245, 356
CviJI	RGCY	8 cut(s)	107, 161, 174, 198, 234, 282, 290, 450
CviKI_1	RGCY	8 cut(s)	107, 161, 174, 198, 234, 282, 290, 450
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	6 cut(s)	201, 245, 312, 339, 356, 461
EcoRII	CCWGG	2 cut(s)	294, 457
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	159, 232
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	159, 232
GluI	GCNGC	2 cut(s)	159, 232
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	234, 290
HapII	CCGG	5 cut(s)	225, 243, 248, 336, 342
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	5 cut(s)	225, 243, 248, 336, 342
Hpy166II	GTNNAC	2 cut(s)	266, 321
Hpy188I	TCNGA	1 cut(s)	444
Hpy8I	GTNNAC	2 cut(s)	266, 321
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	172, 266, 377
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	266, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 141, 155, 164
HpyF3I	CTNAG	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	29
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	9, 52, 300
MnlI	CCTC	4 cut(s)	37, 164, 215, 474
MslI	CAYNNNNRTG	2 cut(s)	188, 416
MspI	CCGG	5 cut(s)	225, 243, 248, 336, 342
MspR9I	CCNGG	6 cut(s)	226, 243, 249, 296, 337, 459
MvaI	CCWGG	2 cut(s)	296, 459
MwoI	GCNNNNNNNGC	4 cut(s)	132, 141, 155, 164
NciI	CCSGG	4 cut(s)	226, 243, 249, 337
NdeII	GATC	1 cut(s)	475
NlaIV	GGNNCC	4 cut(s)	203, 256, 340, 451
OliI	CACNNNNGTG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	160, 233
Psp6I	CCWGG	2 cut(s)	294, 457
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	294, 457
PspN4I	GGNNCC	4 cut(s)	203, 256, 340, 451
PspPI	GGNCC	6 cut(s)	201, 245, 312, 339, 356, 461
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	188, 416
Rsr2I	CGGWCCG	2 cut(s)	245, 356
RsrII	CGGWCCG	2 cut(s)	245, 356
SatI	GCNGC	2 cut(s)	159, 232
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	6 cut(s)	201, 245, 312, 339, 356, 461
ScrFI	CCNGG	6 cut(s)	226, 243, 249, 296, 337, 459
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	2 cut(s)	284, 388
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	6 cut(s)	201, 245, 312, 339, 356, 461
SmiMI	CAYNNNNRTG	2 cut(s)	188, 416
Sse9I	AATT	3 cut(s)	9, 52, 300
SsiI	CCGC	2 cut(s)	149, 231
StyD4I	CCNGG	6 cut(s)	224, 241, 247, 294, 335, 457
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	270
TasI	AATT	3 cut(s)	9, 52, 300
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	3 cut(s)	99, 195, 485
TseI	GCWGC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	99, 195, 485
Van91I	CCANNNNNTGG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	6 cut(s)	201, 245, 312, 339, 356, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.