Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Forward (+)

79282404 .. 79282895

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGCTTCTTACACCAGCATCCACTCCTCTATTGTCACACCCAGCAAATGGTCTCACATTTAGAACAAACACAACCAGATTTCAAACCCAACTCAAGGTCTTATCCATGGCCAAGCAAACCAGCGAAGAAACCAGCAGCACCACCATAGAGAAAATAGCCATAGCCGGCGGCTTAGTCTCCAACCCGGTGATTGGTTGGTCCCTCTACACTCTCAAGACCACCGGGTGTGGCCTGCCTCCCGGACCCGGTGGATCCATCGGTGCACTTGAAGGTGTCAGCTACCTAGCTGTGCTGGGAATAGTGGGTTGGTCTTTGTACACCAAGACCAAAACAGGTTCGGGTCTGCCCAATGGACCATTTGGGTTGCTTGGTGCTGTTGAGGGTCTGTCTTACTTGTCTTTGCTTGCCATTTTGGTCGTGTTTGGGATCCAGTTTGTTCAGCAGGGCTCCATTCCAGGACCCCTTCCAACTGATCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

16.81

Weight (kDa)

8.64

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	4 cut(s)	249, 262, 424, 437
AcoI	YGGCCR	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	50, 97, 194, 248
AgsI	TTSAA	2 cut(s)	86, 272
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	2 cut(s)	282, 290
AluI	AGCT	2 cut(s)	282, 290
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	59, 184
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	4 cut(s)	249, 262, 424, 437
AoxI	GGCC	2 cut(s)	111, 232
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	138
AspS9I	GGNCC	4 cut(s)	201, 245, 356, 461
AsuC2I	CCSGG	4 cut(s)	188, 226, 243, 249
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	201, 245, 356, 461
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	2 cut(s)	254, 429
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	4 cut(s)	188, 226, 243, 249
BcoDI	GTCTC	2 cut(s)	59, 184
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	139, 172
BlsI	GCNGC	2 cut(s)	140, 173
Bme1390I	CCNGG	5 cut(s)	188, 226, 243, 249, 459
Bme18I	GGWCC	4 cut(s)	201, 245, 356, 461
BmgT120I	GGNCC	4 cut(s)	201, 245, 356, 461
BmiI	GGNNCC	6 cut(s)	203, 247, 256, 431, 451, 463
BmrFI	CCNGG	5 cut(s)	188, 226, 243, 249, 459
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	80, 200
BpuMI	CCSGG	4 cut(s)	188, 226, 243, 249
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 97, 194, 248
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	4 cut(s)	50, 97, 194, 248
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	2 cut(s)	43, 295
BshFI	GGCC	2 cut(s)	113, 234
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	5 cut(s)	168, 188, 225, 243, 249
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	50, 97, 194, 248
BsmAI	GTCTC	2 cut(s)	59, 184
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	113, 234
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	268, 452
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	254, 429, 475
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	113, 234
BspLI	GGNNCC	6 cut(s)	203, 247, 256, 431, 451, 463
BspPI	GGATC	4 cut(s)	249, 262, 424, 437
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	254, 429, 475
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	459
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	169, 236, 408
BstDEI	CTNAG	1 cut(s)	175
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	257, 432, 478
BstMAI	GTCTC	2 cut(s)	59, 184
BstMBI	GATC	3 cut(s)	254, 429, 475
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	5 cut(s)	186, 224, 241, 247, 457
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	254, 429
BstYI	RGATCY	2 cut(s)	254, 429
BsuRI	GGCC	2 cut(s)	113, 234
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	169, 236, 408
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	201, 245, 356, 461
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	8 cut(s)	113, 161, 167, 174, 234, 282, 290, 450
CviKI_1	RGCY	8 cut(s)	113, 161, 167, 174, 234, 282, 290, 450
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	3 cut(s)	256, 431, 477
DpnII	GATC	3 cut(s)	254, 429, 475
DraIII	CACNNNGTG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	4 cut(s)	201, 245, 356, 461
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	112
FaiI	YATR	3 cut(s)	110, 149, 164
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	139, 172
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	139, 172
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	2 cut(s)	139, 172
GsaI	CCCAGC	2 cut(s)	47, 299
HaeIII	GGCC	2 cut(s)	113, 234
HapII	CCGG	5 cut(s)	168, 188, 225, 243, 249
Hin1II	CATG	1 cut(s)	112
HpaII	CCGG	5 cut(s)	168, 188, 225, 243, 249
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	266, 321
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	266, 321
HpyAV	CCTTC	2 cut(s)	266, 476
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	254, 429, 475
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	3 cut(s)	256, 431, 477
MboI	GATC	3 cut(s)	254, 429, 475
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	2 cut(s)	254, 429
MhlI	GDGCHC	2 cut(s)	268, 452
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	39, 215, 249, 376
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	5 cut(s)	168, 188, 225, 243, 249
MspR9I	CCNGG	5 cut(s)	188, 226, 243, 249, 459
MvaI	CCWGG	1 cut(s)	459
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	4 cut(s)	188, 226, 243, 249
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	254, 429, 475
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	6 cut(s)	203, 247, 256, 431, 451, 463
NmuCI	GTSAC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	50
PfoI	TCCNGGA	2 cut(s)	241, 457
PkrI	GCNGC	2 cut(s)	140, 173
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	2 cut(s)	43, 295
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	6 cut(s)	203, 247, 256, 431, 451, 463
PspPI	GGNCC	4 cut(s)	201, 245, 356, 461
PspPPI	RGGWCCY	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	254, 429
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SatI	GCNGC	2 cut(s)	139, 172
Sau3AI	GATC	3 cut(s)	254, 429, 475
Sau96I	GGNCC	4 cut(s)	201, 245, 356, 461
ScrFI	CCNGG	5 cut(s)	188, 226, 243, 249, 459
SduI	GDGCHC	2 cut(s)	268, 452
SetI	ASST	6 cut(s)	102, 277, 284, 288, 292, 340
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	4 cut(s)	201, 245, 356, 461
SmlI	CTYRAG	2 cut(s)	95, 215
SmoI	CTYRAG	2 cut(s)	95, 215
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	5 cut(s)	186, 224, 241, 247, 457
StyI	CCWWGG	1 cut(s)	108
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	174
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	36
TspRI	CASTG	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	4 cut(s)	201, 245, 356, 461
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.