Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Forward (+)

16300784 .. 16301378

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGTTAGTTTCTCCAGCATCCACCTCCCTATTATCAAACCCACTTCAAAGCTTCCATGCCACATACAAAACAACATCAACCAGATTGCAAGCCCCAGCCAAGGTCTTAGCCATGGCAAAGCAAACCAGCGACGACAGCAGCAGCAGCACCATTGCAGAGAAAGCAGCCATAGCAGGAGGCCTAGTCTCCACCCCAGTGATTGGCTGGTCACTCTACACCCTCAAAACAACCGGCTGTGGCCTGCCGCCCGGACCCGCTGGCTCCATCGGTGCCCTTGAAGGCGTGAGCTATTTGGCTGTCCTGGGAATTGTAGGGTGGTCCTTGTACACCAAGACCAAAACTGGCTCTGGCCTCCCTAATGGCCCTTTTGGCCTTTTGGGTGCTGTTGAAGGTCTCTCTTACTTGTCTTTGCTCTCCATTTTGGTGGTGTTTGGGCTCCAATTTTTTCAGCAGGGCTCCATTCCAGGACCCCTCCCCAGTGACCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

16.93

Weight (kDa)

8.6

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	2 cut(s)	248, 258
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	103, 203
AgsI	TTSAA	3 cut(s)	50, 281, 392
AjnI	CCWGG	2 cut(s)	303, 466
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	54, 291
AluI	AGCT	2 cut(s)	54, 291
Alw26I	GTCTC	2 cut(s)	193, 401
AoxI	GGCC	5 cut(s)	181, 241, 352, 364, 373
ApeKI	GCWGC	4 cut(s)	141, 144, 147, 167
ArsI	GACNNNNNNTTYG	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	254, 321, 365, 470
AsuC2I	CCSGG	1 cut(s)	252
AvaII	GGWCC	3 cut(s)	254, 321, 470
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	441, 461
BbvI	GCAGC	4 cut(s)	153, 156, 159, 179
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	305, 468
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	193, 401
BfaI	CTAG	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	372
BisI	GCNGC	5 cut(s)	142, 145, 148, 168, 248
BlsI	GCNGC	5 cut(s)	143, 146, 149, 169, 249
Bme1390I	CCNGG	3 cut(s)	252, 305, 468
Bme18I	GGWCC	3 cut(s)	254, 321, 470
BmgT120I	GGNCC	4 cut(s)	254, 321, 365, 470
BmiI	GGNNCC	6 cut(s)	256, 265, 274, 440, 460, 472
BmrFI	CCNGG	3 cut(s)	252, 305, 468
BmrI	ACTGGG	2 cut(s)	191, 474
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	2 cut(s)	191, 474
BpuMI	CCSGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	102, 114, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 203
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	4 cut(s)	197, 349, 480, 487
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	305, 468
BseDI	CCNNGG	3 cut(s)	102, 114, 304
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	103, 203
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	4 cut(s)	197, 349, 480, 487
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	153, 156, 159, 179
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	5 cut(s)	183, 243, 354, 366, 375
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	234, 252
BslI	CCNNNNNNNGG	2 cut(s)	103, 203
BsmAI	GTCTC	2 cut(s)	193, 401
BsnI	GGCC	5 cut(s)	183, 243, 354, 366, 375
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	277, 441, 461
Bsp1407I	TGTACA	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	248, 258
BspANI	GGCC	5 cut(s)	183, 243, 354, 366, 375
BspLI	GGNNCC	6 cut(s)	256, 265, 274, 440, 460, 472
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	197, 349, 480, 487
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	102, 114, 304
BssT1I	CCWWGG	2 cut(s)	102, 114
Bst2UI	CCWGG	2 cut(s)	305, 468
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	93, 245, 262
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	193, 401
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 147, 164, 173, 372
BstNI	CCWGG	2 cut(s)	305, 468
BstSCI	CCNGG	3 cut(s)	250, 303, 466
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	153, 156, 159, 179
BstXI	CCANNNNNNTGG	2 cut(s)	427, 494
BsuRI	GGCC	5 cut(s)	183, 243, 354, 366, 375
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	204, 487, 494
Cac8I	GCNNGC	3 cut(s)	93, 245, 262
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	254, 321, 365, 470
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	59, 115
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	102, 114
Eco147I	AGGCCT	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	441, 461
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	3 cut(s)	254, 321, 470
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	303, 466
EcoT14I	CCWWGG	2 cut(s)	102, 114
EcoT38I	GRGCYC	2 cut(s)	441, 461
ErhI	CCWWGG	2 cut(s)	102, 114
FaeI	CATG	2 cut(s)	62, 118
FaiI	YATR	4 cut(s)	60, 67, 116, 173
FatI	CATG	2 cut(s)	58, 114
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	5 cut(s)	142, 145, 148, 168, 248
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	2 cut(s)	441, 461
Fsp4HI	GCNGC	5 cut(s)	142, 145, 148, 168, 248
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	5 cut(s)	142, 145, 148, 168, 248
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	5 cut(s)	183, 243, 354, 366, 375
HapII	CCGG	2 cut(s)	234, 252
Hin1II	CATG	2 cut(s)	62, 118
HindIII	AAGCTT	1 cut(s)	52
HpaII	CCGG	2 cut(s)	234, 252
Hpy166II	GTNNAC	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	275, 386
HpyCH4V	TGCA	2 cut(s)	91, 158
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 147, 164, 173, 372
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	62, 118
LmnI	GCTCC	3 cut(s)	269, 444, 464
Lsp1109I	GCAGC	4 cut(s)	153, 156, 159, 179
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	210, 482
MhlI	GDGCHC	3 cut(s)	277, 441, 461
MluCI	AATT	2 cut(s)	309, 443
MnlI	CCTC	5 cut(s)	37, 173, 233, 365, 485
MslI	CAYNNNNRTG	2 cut(s)	197, 425
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	234, 252
MspR9I	CCNGG	3 cut(s)	252, 305, 468
MvaI	CCWGG	2 cut(s)	305, 468
MwoI	GCNNNNNNNGC	5 cut(s)	138, 147, 164, 173, 372
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	114
NlaIII	CATG	2 cut(s)	62, 118
NlaIV	GGNNCC	6 cut(s)	256, 265, 274, 440, 460, 472
NmuCI	GTSAC	2 cut(s)	210, 482
OliI	CACNNNNGTG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	5 cut(s)	143, 146, 149, 169, 249
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	303, 466
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	303, 466
PspN4I	GGNNCC	6 cut(s)	256, 265, 274, 440, 460, 472
PspPI	GGNCC	4 cut(s)	254, 321, 365, 470
PspPPI	RGGWCCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	197, 425
SatI	GCNGC	5 cut(s)	142, 145, 148, 168, 248
Sau96I	GGNCC	4 cut(s)	254, 321, 365, 470
ScrFI	CCNGG	3 cut(s)	252, 305, 468
SduI	GDGCHC	3 cut(s)	277, 441, 461
SetI	ASST	5 cut(s)	29, 56, 108, 293, 397
SfaNI	GCATC	1 cut(s)	29
SfiI	GGCCNNNNNGGCC	1 cut(s)	372
SinI	GGWCC	3 cut(s)	254, 321, 470
SmiMI	CAYNNNNRTG	2 cut(s)	197, 425
Sse9I	AATT	2 cut(s)	309, 443
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	248, 258
SspMI	CTAG	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	250, 303, 466
StyI	CCWWGG	2 cut(s)	102, 114
TasI	AATT	2 cut(s)	309, 443
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	250
TscAI	CASTG	3 cut(s)	204, 487, 494
TseFI	GTSAC	2 cut(s)	210, 482
TseI	GCWGC	4 cut(s)	141, 144, 147, 167
Tsp45I	GTSAC	2 cut(s)	210, 482
TspRI	CASTG	3 cut(s)	204, 487, 494
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	254, 321, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.