Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17135740 .. 17136240

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGCTACTTTCTCCAGTATCCACCTCACTATTACCAAAGCCATTTCACAATTTCAATGCTAGAGATAGAACAACAACAACAACCAGATTTGTGTCTCCCCTGAAAATTTCAGCCAAGGCAAGGGAAAGCAGCGATGAGAGCACCCCCACCATTGCAGAGATAACAGCCATTGCAGGAGGCTTAATCTCCACCCCAGTGATTGGTTGGTCCCTTTACACCCTCAAAACAACCGGGTGCGGCCTGCCACCTGGACCAGGCGATTCAATCGGCGCACTCGAAGATGTCAGCTATTTGGCCGTCCTGGGGATTGTGGGTTGGTCCTTGTACACCAAAACCAAAACCGGGTCTGGTCTGCCCAACGGACCCTTTGGACTGTTGGGTGCTGTTGAAGGTCTGTCTTACTTGTCCTTGCTCTCCATTTTGGTGGTGTTTGGGTTGCAGTTTGTTCAAAATGGCTACATTCCAGGTCCAATCCCAACCGACCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.34

Weight (kDa)

6.55

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	5 cut(s)	123, 203, 257, 306, 345
AgsI	TTSAA	4 cut(s)	58, 267, 392, 452
AjnI	CCWGG	4 cut(s)	250, 256, 303, 466
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	2 cut(s)	241, 297
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	108
ArsI	GACNNNNNNTTYG	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
AsuC2I	CCSGG	2 cut(s)	235, 346
AvaII	GGWCC	5 cut(s)	210, 254, 321, 365, 470
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	4 cut(s)	252, 258, 305, 468
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	235, 346
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	133, 241
BlsI	GCNGC	2 cut(s)	134, 242
Bme1390I	CCNGG	6 cut(s)	235, 252, 258, 305, 346, 468
Bme18I	GGWCC	5 cut(s)	210, 254, 321, 365, 470
BmgT120I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
BmiI	GGNNCC	2 cut(s)	212, 367
BmrFI	CCNGG	6 cut(s)	235, 252, 258, 305, 346, 468
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	235, 346
BsaJI	CCNNGG	2 cut(s)	117, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 203, 257, 306, 345
Bse1I	ACTGG	3 cut(s)	17, 197, 487
Bse3DI	GCAATG	2 cut(s)	153, 171
BseBI	CCWGG	4 cut(s)	252, 258, 305, 468
BseDI	CCNNGG	2 cut(s)	117, 304
BseLI	CCNNNNNNNGG	5 cut(s)	123, 203, 257, 306, 345
BseMI	GCAATG	2 cut(s)	153, 171
BseNI	ACTGG	3 cut(s)	17, 197, 487
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	2 cut(s)	243, 299
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	234, 345
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	5 cut(s)	123, 203, 257, 306, 345
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	243, 299
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	327
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	243, 299
BspLI	GGNNCC	2 cut(s)	212, 367
BsrDI	GCAATG	2 cut(s)	153, 171
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	17, 197, 487
BssECI	CCNNGG	2 cut(s)	117, 304
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	4 cut(s)	252, 258, 305, 468
Bst4CI	ACNGT	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	4 cut(s)	252, 258, 305, 468
BstSCI	CCNGG	6 cut(s)	233, 250, 256, 303, 344, 466
BstV1I	GCAGC	1 cut(s)	144
BstXI	CCANNNNNNTGG	2 cut(s)	427, 494
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	243, 299
BtgZI	GCGATG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	204, 494
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	8 cut(s)	43, 116, 170, 183, 243, 291, 299, 459
CviKI_1	RGCY	8 cut(s)	43, 116, 170, 183, 243, 291, 299, 459
CviQI	GTAC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	5 cut(s)	210, 254, 321, 365, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoRII	CCWGG	4 cut(s)	250, 256, 303, 466
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaqI	GGGAC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	133, 241
Fsp4HI	GCNGC	2 cut(s)	133, 241
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	133, 241
HaeIII	GGCC	2 cut(s)	243, 299
HapII	CCGG	2 cut(s)	234, 345
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	234, 345
Hpy166II	GTNNAC	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	158, 176, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HspAI	GCGC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	63
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	52, 108
MnlI	CCTC	3 cut(s)	37, 173, 233
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	197, 425
MspI	CCGG	2 cut(s)	234, 345
MspR9I	CCNGG	6 cut(s)	235, 252, 258, 305, 346, 468
MvaI	CCWGG	4 cut(s)	252, 258, 305, 468
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	235, 346
NlaIV	GGNNCC	2 cut(s)	212, 367
OliI	CACNNNNGTG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	134, 242
Psp6I	CCWGG	4 cut(s)	250, 256, 303, 466
PspGI	CCWGG	4 cut(s)	250, 256, 303, 466
PspN4I	GGNNCC	2 cut(s)	212, 367
PspPI	GGNCC	5 cut(s)	210, 254, 321, 365, 470
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	197, 425
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	133, 241
Sau96I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
ScrFI	CCNGG	6 cut(s)	235, 252, 258, 305, 346, 468
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	29, 253, 293, 397, 472
SinI	GGWCC	5 cut(s)	210, 254, 321, 365, 470
SmiMI	CAYNNNNRTG	2 cut(s)	197, 425
Sse9I	AATT	2 cut(s)	52, 108
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	6 cut(s)	233, 250, 256, 303, 344, 466
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	52, 108
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	204, 494
TseI	GCWGC	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	204, 494
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	5 cut(s)	210, 254, 321, 365, 470
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.