RchiOBHm_Chr5g0018961

Belongs to the glycosyltransferase 31 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
13420966 .. 13426129
5164 bp
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UTR
Exon/CDS
Intron
PRQ29912

Sequence Viewer

Length: 177 bp
ATGGCTATAACAGGGATTGAGGATTGGCGATACTGGAACTGGATTGCTGCTGAAGAATCAAGGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGTTTGGTGATATAAAATCATATTTTTGCCATGCTTCAGGTGAGATGTATGTCATTTCTCAAGGTCTGGCCAAATTTGTTTGA

Protein Analysis

58

Amino Acids

7.03

Weight (kDa)

5.16

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 72, 114
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 113, 146
BalI TGGCCA 1 cut(s) 164
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 38, 44
BseNI ACTGG 2 cut(s) 38, 44
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 164
BsnI GGCC 1 cut(s) 164
BspANI GGCC 1 cut(s) 164
BsrI ACTGG 2 cut(s) 38, 44
BstV1I GCAGC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 164
CviAII CATG 1 cut(s) 125
CviJI RGCY 2 cut(s) 5, 164
CviKI_1 RGCY 2 cut(s) 5, 164
EaeI YGGCCR 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 72, 114
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 8, 78, 107, 115, 126, 144
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 1 cut(s) 128
HinfI GANTC 2 cut(s) 56, 64
HphI GGTGA 2 cut(s) 113, 146
Hsp92II CATG 1 cut(s) 128
LpnPI CCDG 5 cut(s) 19, 25, 96, 117, 146
Lsp1109I GCAGC 1 cut(s) 34
MboII GAAGA 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 1 cut(s) 13
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
NlaIII CATG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 48
SchI GAGTC 1 cut(s) 73
SetI ASST 2 cut(s) 136, 160
SgeI CNNG 9 cut(s) 24, 46, 52, 72, 95, 137, 144, 167, 173
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 167
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 56
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 93
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.