Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

13032259 .. 13033742

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG155900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTGCTTCTTACACCAGCATCCACTCCTCTATTGTCACACCCAAATGGTCTCACATTTAGAACAAACACAACCAGATTTCAAACCCAACTCAAGGTCTTATCCATGGCCAAGCAAACCAGCGAAGAAACCAGCAGCACCACCATAGAGAAAATAGCCATAGCCGGCGGCTTAGTCTCCAACCCGGTGATTGGTTGGTCCCTCTACACTCTCAAGACCACCGGGTGTGGCCTGCCTCCCGGACCCGGTGGATCCATCGGTGCACTTGAAGGTGTCAGCTACCTAGCTGTGCTGGGAATAGTGGGTTGGTCTTTGTACACCAAGACCAAAACAGGCTCGGGTCTGCCCAATGGACCATTTGGGTTGCTTGGTGCTGTTGAGGGTCTGTCTTACTTGTCTTTGCTTGCCATTTTGGTCGTGTTTGGGATCCAGTTTGTTCAGCAGGGCTCCATTCCAGGACCCCTCCCAACTGATCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

16.74

Weight (kDa)

8.64

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	4 cut(s)	246, 259, 421, 434
AcoI	YGGCCR	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
AgsI	TTSAA	2 cut(s)	83, 269
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	2 cut(s)	279, 287
AluI	AGCT	2 cut(s)	279, 287
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	56, 181
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	4 cut(s)	246, 259, 421, 434
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	108, 229
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	135
AspS9I	GGNCC	4 cut(s)	198, 242, 353, 458
AsuC2I	CCSGG	4 cut(s)	185, 223, 240, 246
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	4 cut(s)	198, 242, 353, 458
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	110
BamHI	GGATCC	2 cut(s)	251, 426
BanII	GRGCYC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	4 cut(s)	185, 223, 240, 246
BcoDI	GTCTC	2 cut(s)	56, 181
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	136, 169
BlsI	GCNGC	2 cut(s)	137, 170
Bme1390I	CCNGG	5 cut(s)	185, 223, 240, 246, 456
Bme18I	GGWCC	4 cut(s)	198, 242, 353, 458
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	4 cut(s)	198, 242, 353, 458
BmiI	GGNNCC	6 cut(s)	200, 244, 253, 428, 448, 460
BmrFI	CCNGG	5 cut(s)	185, 223, 240, 246, 456
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	77, 197
BpuMI	CCSGG	4 cut(s)	185, 223, 240, 246
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 191, 245
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	292
BshFI	GGCC	2 cut(s)	110, 231
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	165, 185, 222, 240, 246
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	94, 191, 245
BsmAI	GTCTC	2 cut(s)	56, 181
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	110, 231
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	265, 449
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	251, 426, 472
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	110, 231
BspLI	GGNNCC	6 cut(s)	200, 244, 253, 428, 448, 460
BspPI	GGATC	4 cut(s)	246, 259, 421, 434
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	251, 426, 472
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	3 cut(s)	166, 233, 405
BstDEI	CTNAG	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	254, 429, 475
BstMAI	GTCTC	2 cut(s)	56, 181
BstMBI	GATC	3 cut(s)	251, 426, 472
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	5 cut(s)	183, 221, 238, 244, 454
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	251, 426
BstYI	RGATCY	2 cut(s)	251, 426
BsuRI	GGCC	2 cut(s)	110, 231
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	166, 233, 405
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	4 cut(s)	198, 242, 353, 458
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	9 cut(s)	110, 158, 164, 171, 231, 279, 287, 336, 447
CviKI_1	RGCY	9 cut(s)	110, 158, 164, 171, 231, 279, 287, 336, 447
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	3 cut(s)	253, 428, 474
DpnII	GATC	3 cut(s)	251, 426, 472
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	4 cut(s)	198, 242, 353, 458
Eco88I	CYCGRG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	107, 146, 161
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	136, 169
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	2 cut(s)	136, 169
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	136, 169
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	110, 231
HapII	CCGG	5 cut(s)	165, 185, 222, 240, 246
Hin1II	CATG	1 cut(s)	109
HpaII	CCGG	5 cut(s)	165, 185, 222, 240, 246
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	263, 318
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	263, 318
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	251, 426, 472
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	3 cut(s)	253, 428, 474
MboI	GATC	3 cut(s)	251, 426, 472
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	2 cut(s)	251, 426
MhlI	GDGCHC	2 cut(s)	265, 449
MlsI	TGGCCA	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	39, 212, 246, 373, 473
Mox20I	TGGCCA	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	5 cut(s)	165, 185, 222, 240, 246
MspR9I	CCNGG	5 cut(s)	185, 223, 240, 246, 456
MvaI	CCWGG	1 cut(s)	456
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	4 cut(s)	185, 223, 240, 246
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	251, 426, 472
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	6 cut(s)	200, 244, 253, 428, 448, 460
NmuCI	GTSAC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	166
PfoI	TCCNGGA	2 cut(s)	238, 454
PkrI	GCNGC	2 cut(s)	137, 170
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	6 cut(s)	200, 244, 253, 428, 448, 460
PspPI	GGNCC	4 cut(s)	198, 242, 353, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	251, 426
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	45
SatI	GCNGC	2 cut(s)	136, 169
Sau3AI	GATC	3 cut(s)	251, 426, 472
Sau96I	GGNCC	4 cut(s)	198, 242, 353, 458
ScrFI	CCNGG	5 cut(s)	185, 223, 240, 246, 456
SduI	GDGCHC	2 cut(s)	265, 449
SetI	ASST	5 cut(s)	99, 274, 281, 285, 289
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	4 cut(s)	198, 242, 353, 458
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	92, 212
SmoI	CTYRAG	2 cut(s)	92, 212
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	5 cut(s)	183, 221, 238, 244, 454
StyI	CCWWGG	1 cut(s)	105
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	171
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	36
TspRI	CASTG	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	4 cut(s)	198, 242, 353, 458
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.