Rh7DG061900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008544
Physical Location & Seq
Reverse (-)
4791079 .. 4791915
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG061900.1

Sequence Viewer

Length: 378 bp
ATGGCTGTGGTGAATAGAAAAAGGCAAGGTGACGATGGCAATAAGCTATTGTGGTTGGACAGGGTGACCGGAAGGGTTTGCACGTCGATTTCTGCAAAAGCCATGGCTATAACAGGGATTGAGGATTGGCGATACTGGAACTGGATTGCTGCTGAAGAATCAAGCTCAGATTTATTGCAAATTAAATTTCTCCTTTCTGTTGTTGCAAAACTTTTCCTTGCTTGGTGGGTTTATATTGGAACAGATTTCTCAATGAAATCTTTACTGCCATTGGCCGGGGATGTCATTCTTCTTTTCATTATTACGTGGTTCATGAAAAAACGTAGAAAACTAAAGGCAAAACCATTTGGAGTTCCATCGATTCTGGAGGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

9.81

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 26 - 90 2.3e-06 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 275
AjiI CACGTC 1 cut(s) 84
AluBI AGCT 2 cut(s) 46, 165
AluI AGCT 2 cut(s) 46, 165
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 3 cut(s) 22, 41, 76
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 29, 364
BcnI CCSGG 1 cut(s) 277
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 102, 276
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 140, 146
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 102, 276
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 140, 146
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 359
BsiSI CCGG 2 cut(s) 69, 276
BslI CCNNNNNNNGG 1 cut(s) 275
BsnI GGCC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 102
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 359
BspHI TCATGA 1 cut(s) 312
BsrI ACTGG 2 cut(s) 140, 146
BssECI CCNNGG 2 cut(s) 102, 276
BssT1I CCWWGG 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 286
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 359
BsuRI GGCC 1 cut(s) 275
BsuTUI ATCGAT 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 286
CciI TCATGA 1 cut(s) 312
ClaI ATCGAT 1 cut(s) 359
CviAII CATG 2 cut(s) 103, 313
CviJI RGCY 6 cut(s) 5, 46, 101, 107, 165, 275
CviKI_1 RGCY 6 cut(s) 5, 46, 101, 107, 165, 275
DdeI CTNAG 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 106, 316
FaiI YATR 4 cut(s) 104, 110, 234, 314
FatI CATG 2 cut(s) 102, 312
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 275
HapII CCGG 2 cut(s) 69, 276
Hin1II CATG 2 cut(s) 106, 316
HinfI GANTC 2 cut(s) 158, 361
HpaII CCGG 2 cut(s) 69, 276
HphI GGTGA 3 cut(s) 22, 41, 76
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 313, 365
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 3 cut(s) 83, 305, 322
HpyCH4V TGCA 4 cut(s) 81, 95, 178, 206
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 3 cut(s) 83, 305, 322
Hsp92II CATG 2 cut(s) 106, 316
LpnPI CCDG 7 cut(s) 46, 82, 99, 121, 127, 289, 350
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 3 cut(s) 83, 305, 322
MaeIII GTNAC 2 cut(s) 29, 64
MboII GAAGA 2 cut(s) 167, 281
MfeI CAATTG 1 cut(s) 373
MluCI AATT 3 cut(s) 180, 185, 373
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 115, 361
MseI TTAA 1 cut(s) 183
MspI CCGG 2 cut(s) 69, 276
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 373
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 102
NlaIII CATG 2 cut(s) 106, 316
NmuCI GTSAC 2 cut(s) 29, 64
PagI TCATGA 1 cut(s) 312
PfeI GAWTC 2 cut(s) 158, 361
PkrI GCNGC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 306
PspEI GGTNACC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 277
SetI ASST 7 cut(s) 31, 48, 86, 167, 308, 325, 372
Sse9I AATT 3 cut(s) 180, 185, 373
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 3 cut(s) 86, 308, 325
TaqI TCGA 2 cut(s) 86, 359
TasI AATT 3 cut(s) 180, 185, 373
TfiI GAWTC 2 cut(s) 158, 361
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 2 cut(s) 29, 64
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 29, 64
TspDTI ATGAA 4 cut(s) 269, 286, 301, 329
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.