Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000838.1

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

62537 .. 65751

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000838.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggccaagcaaaccagcgaagaaaccagcagcaccaccatagagaaaatagccatagccggcggcttagtctccaacccggtgattggttggtccctctacactctcaagaccaccgggtgtggcctgcctcccggacccggtggatccatcggtgcacttgaaggtgtcagctacctagctgtgctgggaatagtgggttggtctttgtacaccaagaccaaaacaggctcgggtctgcccaatggaccatttggtttgttcagcagggctccattccaggacccctcccaactgatcagtgctttggatgaagatgaagatgatgataatcagactagcagacaaggtgacgatggcaataagctattgtggctggacagggtgaccggaagggtttgcacgtcgatttctgcaaaggccatggctataacagggattgaggatcggcgatactggaactggattgctactgaagaatcaaggagtcaaaaagtggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.84

Weight (kDa)

4.81

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	3 cut(s)	141, 154, 453
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	86, 140
AgsI	TTSAA	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	3 cut(s)	174, 182, 367
AluI	AGCT	3 cut(s)	174, 182, 367
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	141, 154, 453
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	3 cut(s)	3, 124, 420
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	30
AspS9I	GGNCC	4 cut(s)	93, 137, 248, 283
AsuC2I	CCSGG	4 cut(s)	80, 118, 135, 141
AsuHPI	GGTGA	3 cut(s)	94, 362, 397
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	4 cut(s)	93, 137, 248, 283
BaeGI	GKGCMC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	158, 350
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	4 cut(s)	80, 118, 135, 141
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	179, 339
BisI	GCNGC	2 cut(s)	31, 64
BlsI	GCNGC	2 cut(s)	32, 65
Bme1390I	CCNGG	5 cut(s)	80, 118, 135, 141, 281
Bme18I	GGWCC	4 cut(s)	93, 137, 248, 283
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	4 cut(s)	93, 137, 248, 283
BmiI	GGNNCC	5 cut(s)	95, 139, 148, 273, 285
BmrFI	CCNGG	5 cut(s)	80, 118, 135, 141, 281
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	4 cut(s)	80, 118, 135, 141
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 140
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	461, 467
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	86, 140
BseNI	ACTGG	2 cut(s)	461, 467
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	3 cut(s)	5, 126, 422
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	6 cut(s)	60, 80, 117, 135, 141, 390
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	86, 140
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	5, 126, 422
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	160, 274
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	146, 297, 445
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	3 cut(s)	5, 126, 422
BspLI	GGNNCC	5 cut(s)	95, 139, 148, 273, 285
BspPI	GGATC	3 cut(s)	141, 154, 453
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	461, 467
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	3 cut(s)	146, 297, 445
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	61, 128
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	423
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	149, 300, 448
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	146, 297, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	5 cut(s)	78, 116, 133, 139, 279
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	5, 126, 422
BtgI	CCRYGG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	61, 128
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	4 cut(s)	93, 137, 248, 283
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	424
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	3 cut(s)	148, 299, 447
DpnII	GATC	3 cut(s)	146, 297, 445
DraIII	CACNNNGTG	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	4 cut(s)	93, 137, 248, 283
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	427
FaiI	YATR	4 cut(s)	41, 56, 425, 431
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	31, 64
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	31, 64
FspBI	CTAG	2 cut(s)	179, 339
GluI	GCNGC	2 cut(s)	31, 64
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	5, 126, 422
HapII	CCGG	6 cut(s)	60, 80, 117, 135, 141, 390
Hin1II	CATG	1 cut(s)	427
HinfI	GANTC	2 cut(s)	479, 487
HpaII	CCGG	6 cut(s)	60, 80, 117, 135, 141, 390
HphI	GGTGA	3 cut(s)	94, 362, 397
Hpy166II	GTNNAC	2 cut(s)	158, 213
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	158, 213
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	158, 387
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	158, 402, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	427
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	146, 297, 445
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	179, 339
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	350, 385
MalI	GATC	3 cut(s)	148, 299, 447
MboI	GATC	3 cut(s)	146, 297, 445
MboII	GAAGA	4 cut(s)	32, 326, 332, 488
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	160, 274
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	107, 141, 298, 436
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	60, 80, 117, 135, 141, 390
MspR9I	CCNGG	5 cut(s)	80, 118, 135, 141, 281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	373
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	4 cut(s)	80, 118, 135, 141
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	3 cut(s)	146, 297, 445
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	5 cut(s)	95, 139, 148, 273, 285
NmuCI	GTSAC	2 cut(s)	350, 385
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	479
PfoI	TCCNGGA	2 cut(s)	133, 279
PkrI	GCNGC	2 cut(s)	32, 65
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	95, 139, 148, 273, 285
PspPI	GGNCC	4 cut(s)	93, 137, 248, 283
PspPPI	RGGWCCY	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SatI	GCNGC	2 cut(s)	31, 64
Sau3AI	GATC	3 cut(s)	146, 297, 445
Sau96I	GGNCC	4 cut(s)	93, 137, 248, 283
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	5 cut(s)	80, 118, 135, 141, 281
SduI	GDGCHC	2 cut(s)	160, 274
SetI	ASST	7 cut(s)	169, 176, 180, 184, 352, 369, 407
SinI	GGWCC	4 cut(s)	93, 137, 248, 283
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	179, 339
StyD4I	CCNGG	5 cut(s)	78, 116, 133, 139, 279
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	407
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	350, 385
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	2 cut(s)	350, 385
TspDTI	ATGAA	2 cut(s)	327, 333
TspRI	CASTG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	4 cut(s)	93, 137, 248, 283
XspI	CTAG	2 cut(s)	179, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.