Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008544

Physical Location & Seq

Genomic Coordinates Reverse (-)

22697204 .. 22697704

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1264900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGCTACTTTCTCCAGCATCCACCTCACTATTACCAAAGCCATTTCACAATTTCAATGCTAGAGATAGAACAACAACAACAACCAGATTTGTATCTCCCCTGAAAATTTCAGCCAAGGCAAAGGAAAGCAGCGATGAGAGCACCCCCACCATTGCAGAGATAGCAGCCATTGCAGGAGGCTTAATCTCCACCCCTGTGATTGGCTGGTCCCTGTACACCCTCAAAACAACCGGGTGCGGCCTGCCGCCTGGACCGGGCGGTTCAATCGGCGCACTCGAAGGTGTCAGCTATTTGGCCGTCCTGGGGATTGTGGGTTGGTCCTTGTACACCAAAACCAAAACCGGCTCCGGTCTGCCCAACGGACCCTTCGGACTGTTGGGTGCTGTTGAAGGTCTGTCTTTCTTGTCCTTGCTCTCCATTTTGGTGGTGTTTGGGTTGCAGTTCGTTCAGAATGGCTCCATTCCAGGTCCAATCCCAACTGACCAGTGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.05

Weight (kDa)

8.64

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50685
fragaria_vesca	FvH4_1g13510
malus_domestica	MD02G1150400.v1.1 MD15G1264900.v1.1
prunus_persica	Prupe.7G152700_v2.0.a1
pyrus_communis	pycom15g23070
rosa_chinensis	RchiOBHm_Chr2g0101891 RchiOBHm_Chr5g0018961
rosa_laevigata	RLG00000017108
rosa_multiflora	Rmu_sc0000838.1_g000011 Rmu_sc0004555.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140960 Rroxscaffold_4G00280140
rosa_rugosa	Rorug02G0102900.1
rosa_samantha	Rh2AG150200 Rh2BG155800 Rh2CG156100 Rh2DG155900 Rh2DG505300 Rh4BG169500 Rh5CG148600 Rh7DG061900
rosa_wichuraiana	Rw2G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	240, 248, 261
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	2 cut(s)	218, 329
AfiI	CCNNNNNNNGG	3 cut(s)	203, 257, 306
AgsI	TTSAA	3 cut(s)	58, 267, 392
AjnI	CCWGG	3 cut(s)	250, 303, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	241, 297
ApeKI	GCWGC	2 cut(s)	132, 167
ApoI	RAATTY	1 cut(s)	108
ArsI	GACNNNNNNTTYG	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
AsuC2I	CCSGG	2 cut(s)	235, 258
AvaII	GGWCC	5 cut(s)	210, 254, 321, 365, 470
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	144, 179
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	252, 305, 468
BcnI	CCSGG	2 cut(s)	235, 258
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	4 cut(s)	133, 168, 241, 248
BlsI	GCNGC	4 cut(s)	134, 169, 242, 249
Bme1390I	CCNGG	5 cut(s)	235, 252, 258, 305, 468
Bme18I	GGWCC	5 cut(s)	210, 254, 321, 365, 470
BmgT120I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
BmiI	GGNNCC	4 cut(s)	212, 349, 367, 460
BmrFI	CCNGG	5 cut(s)	235, 252, 258, 305, 468
BmsI	GCATC	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	235, 258
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	117, 304
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 257, 306
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	2 cut(s)	153, 171
Bse8I	GATNNNNATC	1 cut(s)	94
BseBI	CCWGG	3 cut(s)	252, 305, 468
BseDI	CCNNGG	2 cut(s)	117, 304
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	3 cut(s)	203, 257, 306
BseMI	GCAATG	2 cut(s)	153, 171
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	144, 179
BshFI	GGCC	2 cut(s)	243, 299
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	4 cut(s)	234, 257, 345, 351
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	203, 257, 306
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	243, 299
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp1407I	TGTACA	2 cut(s)	216, 327
BspACI	CCGC	3 cut(s)	240, 248, 261
BspANI	GGCC	2 cut(s)	243, 299
BspLI	GGNNCC	4 cut(s)	212, 349, 367, 460
BsrDI	GCAATG	2 cut(s)	153, 171
BsrFI	RCCGGY	1 cut(s)	344
BsrGI	TGTACA	2 cut(s)	216, 327
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	117, 304
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	252, 305, 468
Bst4CI	ACNGT	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	2 cut(s)	216, 327
BstC8I	GCNNGC	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 164, 173
BstNI	CCWGG	3 cut(s)	252, 305, 468
BstSCI	CCNGG	5 cut(s)	233, 250, 256, 303, 466
BstV1I	GCAGC	2 cut(s)	144, 179
BstXI	CCANNNNNNTGG	2 cut(s)	427, 494
BsuRI	GGCC	2 cut(s)	243, 299
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
Csp6I	GTAC	2 cut(s)	217, 328
CviQI	GTAC	2 cut(s)	217, 328
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	5 cut(s)	210, 254, 321, 365, 470
EcoRII	CCWGG	3 cut(s)	250, 303, 466
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaqI	GGGAC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	133, 168, 241, 248
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	4 cut(s)	133, 168, 241, 248
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	133, 168, 241, 248
HaeIII	GGCC	2 cut(s)	243, 299
HapII	CCGG	4 cut(s)	234, 257, 345, 351
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HpaII	CCGG	4 cut(s)	234, 257, 345, 351
Hpy166II	GTNNAC	2 cut(s)	219, 330
Hpy188I	TCNGA	2 cut(s)	374, 453
Hpy8I	GTNNAC	2 cut(s)	219, 330
HpyAV	CCTTC	3 cut(s)	275, 379, 386
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	158, 176, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 164, 173
HspAI	GCGC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	353, 464
Lsp1109I	GCAGC	2 cut(s)	144, 179
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	52, 108
MnlI	CCTC	3 cut(s)	37, 173, 233
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	197, 425
MspI	CCGG	4 cut(s)	234, 257, 345, 351
MspR9I	CCNGG	5 cut(s)	235, 252, 258, 305, 468
MvaI	CCWGG	3 cut(s)	252, 305, 468
MwoI	GCNNNNNNNGC	3 cut(s)	141, 164, 173
NciI	CCSGG	2 cut(s)	235, 258
NlaIV	GGNNCC	4 cut(s)	212, 349, 367, 460
OliI	CACNNNNGTG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	134, 169, 242, 249
Psp6I	CCWGG	3 cut(s)	250, 303, 466
PspGI	CCWGG	3 cut(s)	250, 303, 466
PspN4I	GGNNCC	4 cut(s)	212, 349, 367, 460
PspPI	GGNCC	5 cut(s)	210, 254, 321, 365, 470
RsaI	GTAC	2 cut(s)	218, 329
RsaNI	GTAC	2 cut(s)	217, 328
RseI	CAYNNNNRTG	2 cut(s)	197, 425
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	4 cut(s)	133, 168, 241, 248
Sau96I	GGNCC	5 cut(s)	210, 254, 321, 365, 470
ScrFI	CCNGG	5 cut(s)	235, 252, 258, 305, 468
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	29, 286, 293, 397, 472
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	5 cut(s)	210, 254, 321, 365, 470
SmiMI	CAYNNNNRTG	2 cut(s)	197, 425
Sse9I	AATT	2 cut(s)	52, 108
SsiI	CCGC	3 cut(s)	240, 248, 261
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	5 cut(s)	233, 250, 256, 303, 466
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	52, 108
TatI	WGTACW	2 cut(s)	216, 327
TauI	GCSGC	2 cut(s)	243, 250
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	494
TseI	GCWGC	2 cut(s)	132, 167
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	494
VpaK11BI	GGWCC	5 cut(s)	210, 254, 321, 365, 470
XapI	RAATTY	1 cut(s)	108
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.