Rh5CG148600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008544
Physical Location & Seq
Forward (+)
13587450 .. 13588285
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG148600.1

Sequence Viewer

Length: 297 bp
ATGGCTGTGGTGAATAGAAAAAGGCAAGGTGACGATGGCAATAAGCTATTGTGGTTGGACAGGGTGACCGGAAGGGTTTGCACGTCGATTTCTGCAAAGGCCATGGCTATAACAGGGATTGAGGATTGGCGATACTGGAACTGGATTGCTGCTGAAGAATCAAGATTTCTCAATGAAATCTTTACTGCCATTGGCCGGGATGTCATTCTTCTTTTCATTATTACGTGTTTCATGGAAAAACGTAGAAAACTAAAGGCAAAACCATTTGGAGTTCCATCAATTCTGGAGGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

98

Amino Acids

11.3

Weight (kDa)

9.62

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 26 - 56 5.9e-06 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 84
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AoxI GGCC 2 cut(s) 99, 193
ApeKI GCWGC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 22, 41, 76
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 29, 283
BcnI CCSGG 1 cut(s) 197
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 140, 146
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 140, 146
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 101, 195
BsiSI CCGG 2 cut(s) 69, 196
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 2 cut(s) 101, 195
Bsp19I CCATGG 1 cut(s) 102
BspANI GGCC 2 cut(s) 101, 195
BsrI ACTGG 2 cut(s) 140, 146
BssECI CCNNGG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 101, 195
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 205
CviAII CATG 2 cut(s) 103, 232
CviJI RGCY 5 cut(s) 5, 46, 101, 107, 195
CviKI_1 RGCY 5 cut(s) 5, 46, 101, 107, 195
EaeI YGGCCR 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 106, 235
FaiI YATR 3 cut(s) 104, 110, 233
FatI CATG 2 cut(s) 102, 231
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 101, 195
HapII CCGG 2 cut(s) 69, 196
Hin1II CATG 2 cut(s) 106, 235
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 69, 196
HphI GGTGA 3 cut(s) 22, 41, 76
Hpy188III TCNNGA 2 cut(s) 162, 284
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 3 cut(s) 83, 224, 241
HpyCH4V TGCA 2 cut(s) 81, 95
HpySE526I ACGT 3 cut(s) 83, 224, 241
Hsp92II CATG 2 cut(s) 106, 235
LpnPI CCDG 7 cut(s) 46, 82, 99, 121, 127, 209, 269
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 3 cut(s) 83, 224, 241
MaeIII GTNAC 2 cut(s) 29, 64
MboII GAAGA 2 cut(s) 167, 200
MfeI CAATTG 1 cut(s) 292
MluCI AATT 2 cut(s) 279, 292
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 115, 280
MspI CCGG 2 cut(s) 69, 196
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 292
NciI CCSGG 1 cut(s) 197
NcoI CCATGG 1 cut(s) 102
NlaIII CATG 2 cut(s) 106, 235
NmuCI GTSAC 2 cut(s) 29, 64
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 64
SatI GCNGC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 31, 48, 86, 227, 244, 291
Sse9I AATT 2 cut(s) 279, 292
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 3 cut(s) 86, 227, 244
TaqI TCGA 1 cut(s) 86
TasI AATT 2 cut(s) 279, 292
TfiI GAWTC 1 cut(s) 158
TseFI GTSAC 2 cut(s) 29, 64
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 29, 64
TspDTI ATGAA 3 cut(s) 189, 205, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.