FvH4_1g17050

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003836
Physical Location & Seq
Forward (+)
9855304 .. 9862451
7148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17050.t4

Sequence Viewer

Length: 2520 bp
ATGGTGAATAAAGGTGGGATGGAGATCTCAATGCTCAAAGCACTTCTTAATAGCATCTCCTCTTTTTTCCATTTTTCATCCCATGAGAACATAAATGTGGACCCTGTTCAGAAGTACTACCAAAAAGCAGAAGAGATATTAAAATTGTTGAAGACTGTACTTGATGCCATTGTTGATTCTGAGATAGCTTCTTATGAAGTGCTTAATAAGCCATTTGAAGAACTGGGTCACTATCTTGAGGAATTGAGGGAGCAATTTGAAGACTGGCAACCATTGTCGAGTAAAGTGAATCTTGTTCTGCAAGTTGAATCATTGATTTCAAAGATTCCAACGTGTAGCCTAGATGTCTTTCAGCTGCTGAAGACTTCCGAGCAACATCTTCCTGATGAATTGGGTTCAGCATCTCTTGAGCTCTGTATACAAAAAGTTAAGCATATGAGCTATGAGAAAACATCAACTGTCATTAAAGATGCTATAAGTGTTCTAGTGGAGGGTGTTGGGCCCAGCTCAGAGATCCTAGTGAAAATTGCCGAGGGCCTAAGCTTGAGGTCGAATCAGGAGATTCTTATCGAGGCTGTGGCTCTTGAAAAGCTGAAAGAGAATGCTGAACAATCTGAAAAGATTGAGGAAGCAGAGTATATTGAGCATATGATAGCCCTCGTGACTCGTATGCATGAGCGTCTAATTACGATAAAGCAGTCTGAAAGCTGCAGTGCAGTTCCAATACCTGCTGATTTCTGCTGTCCTCTCTCTCTGGAGCTGATGACAGATCCAGTAATTGTGGCATCAGGACAAACCTATGAGAGAACTTTCATCAAGAATTGGATTAATCTTGGCCTCACAGTTTGTCCTAAGACACGGCAGACTTTAGCTCACACCAATTTGATTCCTAATTACACTGTAAAGGCACTGATTGCAAATTGGTGCGAGTCAAACAATGTGAAACTGCCTGATCCCACAAAGTCTATGGACTTAAATAAGCCAACACACCTTCTTGGACATGCAGAGCCTGGTGTGCCAAAGGACTCGCCTATTCATCCTCGTTCTAGGGTCAACCCATCGATGTCACCTGACTCAACTCGGTCTATGGGTTCCCCCACTAAAAACTTTATCTCATCTGGTGGAGTTCATCGGGGAGGAAGGTCTCCATTCCATCCTCGTTCCGCATCAGAAGGTTCCTTGTCTGGTGTAGCTGGAAATGGGCAGGTTTTGGATGTCGCAAGAATATCATCGACAAGTTCTGAAGATAGATCTGCCATTATAGATGATAGGACTACAGATCTAGTGAGCCAACAGTCTACATCACCATCCAGAAGTGAATTTCCTATTACCACTGAAGCCAACCAGTTGTCGCAAAGCCATAATAGAAGTGCCTCAGCCTCCAGCATACTGTCTAATACCAATGGTCCTCGAGAAACTACATTAGATGCCAATGGGTCCTTACAGACATCAGGTAACTTGTCAGGCTACAGCAGTGATGCTTCTGGGGAGTTTAAATCAGAACAACAGGCTGCTACCCCTCAACAGAGAGAACCTGAGTTGCCAACCAGAATGCCGGAGGCAAGACCACGTAATCCAATGTGGCGTCGACCTTCTGGGAGCTTAATCCCAAGGATGGTGTCGCATCCACCTACTGAAACAAGACCCGATCTTTCTGGACTGGAAGCCCAAGTTCGGACTCTGGTAGAGGACTTGAAAAGCACTACACTTGATACTCAAAGAGATGCAACATATGAACTCCGGATGCTTGCAAAGCATAATATGGATAATCGGATTGTTATTGCAAACTGTGGGGCCATTAGCTTGTTGGTGGAATTGCTCCGTTCTACAGATTCTAGGGTTCAGGAAAATTCTGTCACGGCACTTCTTAACTTGTCAATCAATGATAACAACAAAACTGCAATTGCTACTGCTGATGCAATTGAACCTCTGATTTATGTCCTTGAGACAGGGAGTGCTGAGGCTAAGGAGAACTCAGCCGCCACTCTCTTTAGCCTTTCGGTGATCGAGGATAACAAGGTTCGTATTGGAAGGTCAGGGGCTATTAGGCCTCTAGTTGATCTACTGGGAAATGGAACTCCTAGAGGGAGGAAAGATGCAGCCACTGCTTTGTTTAATTTGTCAATATTCCATGAGAACAAGGCTCGGATTGTTCAAGCTGGTGCTGTAAAGTACTTGGTGGAGTTGATGGACCCAGCTGCTGGAATGGTTGACAAGGCAGTTGCTGTTTTGGCTAATCTCTCTACAATTCCGGAAGGAAGGACTGCAATTGGTCAGGAGGGTGGGATCCCTGTTCTAGTTGAGGTTGTTGAGTTGGGTTCTGCTAGAGGGAAAGAGAATGCAGCTGCTGCTCTTTTACAGCTCTGCACAAATAGTAATAAGTATTGCAGTATGGTGCTCCAAGAAGGAGCTGTCCCGCCGCTAGTCGTATTGTCACAATCTGGCACCCCAAGGGCCAAAGAAAAGGCTCAGACGCTACTTAGTTACTTCAGAAACCATAGAAATGCCGGTAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

840

Amino Acids

91.34

Weight (kDa)

5.81

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB2_N PF25240 8 - 146 3.6e-60 PUB2-like, N-terminal domain
U-box PF04564 242 - 312 5.7e-22 U-box domain
ARM_PUB PF25598 557 - 832 2.6e-29 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 558 - 730 1.3e-10 ARMC5
Arm PF00514 589 - 626 1.1e-09 Armadillo/beta-catenin-like repeat
Arm PF00514 671 - 708 2.2e-06 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 702 - 828 2.4e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 736, 1195
AccB1I GGYRCC 1 cut(s) 2444
AccB7I CCANNNNNTGG 1 cut(s) 2201
AccI GTMKAC 3 cut(s) 418, 1298, 1588
AccIII TCCGGA 2 cut(s) 1740, 2251
AciI CCGC 4 cut(s) 1164, 1980, 2417, 2420
AclWI GGATC 5 cut(s) 508, 764, 947, 2281, 2294
AcsI RAATTY 2 cut(s) 1319, 1849
AcuI CTGAAG 4 cut(s) 380, 1263, 1356, 2473
AcyI GRCGYC 1 cut(s) 1585
AfaI GTAC 3 cut(s) 116, 159, 2174
AfiI CCNNNNNNNGG 3 cut(s) 1615, 1674, 2201
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 9 cut(s) 151, 218, 260, 308, 321, 587, 1696, 1925, 2156
AjnI CCWGG 1 cut(s) 1009
Alw21I GWGCWC 2 cut(s) 414, 2400
Alw26I GTCTC 2 cut(s) 1149, 1940
AlwI GGATC 5 cut(s) 508, 764, 947, 2281, 2294
AlwNI CAGNNNCTG 6 cut(s) 358, 1010, 2105, 2201, 2225, 2348
Ama87I CYCGRG 1 cut(s) 1410
Aor13HI TCCGGA 2 cut(s) 1740, 2251
AoxI GGCC 6 cut(s) 500, 535, 835, 1794, 2048, 2454
ApaI GGGCCC 1 cut(s) 504
ApeKI GCWGC 8 cut(s) 355, 708, 1511, 2099, 2198, 2342, 2345, 2348
ApoI RAATTY 2 cut(s) 1319, 1849
AseI ATTAAT 1 cut(s) 828
AspS9I GGNCC 9 cut(s) 100, 500, 501, 535, 1406, 1437, 1794, 2191, 2454
AsuHPI GGTGA 4 cut(s) 16, 1059, 1296, 2014
AvaI CYCGRG 1 cut(s) 1410
AvaII GGWCC 4 cut(s) 100, 1406, 1437, 2191
BaeGI GKGCMC 1 cut(s) 504
BamHI GGATCC 1 cut(s) 2286
BanI GGYRCC 1 cut(s) 2444
BanII GRGCYC 2 cut(s) 414, 504
BauI CACGAG 1 cut(s) 659
BbsI GAAGAC 3 cut(s) 158, 267, 368
Bbv12I GWGCWC 2 cut(s) 414, 2400
BbvCI CCTCAGC 2 cut(s) 1375, 1959
BbvI GCAGC 8 cut(s) 342, 695, 1498, 2111, 2185, 2332, 2335, 2354
BccI CCATC 6 cut(s) 13, 1066, 1161, 1315, 1609, 2182
BceAI ACGGC 2 cut(s) 875, 1875
BciT130I CCWGG 1 cut(s) 1011
BcoDI GTCTC 2 cut(s) 1149, 1940
BfmI CTRYAG 4 cut(s) 709, 1275, 1468, 1827
BfuAI ACCTGC 2 cut(s) 736, 1195
BglII AGATCT 3 cut(s) 24, 1250, 1279
BmcAI AGTACT 2 cut(s) 116, 2174
Bme1390I CCNGG 1 cut(s) 1011
Bme18I GGWCC 4 cut(s) 100, 1406, 1437, 2191
BmeT110I CYCGRG 1 cut(s) 1410
BmgT120I GGNCC 9 cut(s) 100, 500, 501, 535, 1406, 1437, 1794, 2191, 2454
BmiI GGNNCC 9 cut(s) 102, 502, 1093, 1177, 1438, 1795, 2193, 2288, 2446
BmrFI CCNGG 1 cut(s) 1011
BmrI ACTGGG 2 cut(s) 233, 2075
BmuI ACTGGG 2 cut(s) 233, 2075
BpiI GAAGAC 3 cut(s) 158, 267, 368
BpmI CTGGAG 2 cut(s) 776, 1366
Bpu10I CCTNAGC 4 cut(s) 539, 1375, 1959, 1965
BpuEI CTTGAG 4 cut(s) 257, 428, 565, 1964
Bsa29I ATCGAT 1 cut(s) 1061
BsaAI YACGTR 1 cut(s) 1571
BsaBI GATNNNNATC 2 cut(s) 23, 566
BsaHI GRCGYC 1 cut(s) 1585
BsaI GGTCTC 1 cut(s) 1149
BsaJI CCNNGG 3 cut(s) 531, 1610, 2450
BsaWI WCCGGW 2 cut(s) 1740, 2251
Bsc4I CCNNNNNNNGG 3 cut(s) 1615, 1674, 2201
Bse118I RCCGGY 1 cut(s) 2507
Bse1I ACTGG 6 cut(s) 228, 269, 773, 1345, 1665, 2070
Bse8I GATNNNNATC 2 cut(s) 23, 566
BseAI TCCGGA 2 cut(s) 1740, 2251
BseBI CCWGG 1 cut(s) 1011
BseCI ATCGAT 1 cut(s) 1061
BseDI CCNNGG 3 cut(s) 531, 1610, 2450
BseGI GGATG 9 cut(s) 24, 77, 1036, 1153, 1219, 1307, 1620, 1624, 1749
BseJI GATNNNNATC 2 cut(s) 23, 566
BseLI CCNNNNNNNGG 3 cut(s) 1615, 1674, 2201
BseMII CTCAG 7 cut(s) 171, 522, 1389, 1527, 1950, 1989, 2483
BseNI ACTGG 6 cut(s) 228, 269, 773, 1345, 1665, 2070
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 8 cut(s) 342, 695, 1498, 2111, 2185, 2332, 2335, 2354
BseYI CCCAGC 2 cut(s) 503, 2194
BsgI GTGCAG 2 cut(s) 735, 2350
BshFI GGCC 6 cut(s) 502, 537, 837, 1796, 2050, 2456
BshNI GGYRCC 1 cut(s) 2444
BshVI ATCGAT 1 cut(s) 1061
BsiHKAI GWGCWC 2 cut(s) 414, 2400
BsiHKCI CYCGRG 1 cut(s) 1410
BsiSI CCGG 4 cut(s) 1556, 1741, 2252, 2508
BslFI GGGAC 1 cut(s) 2399
BslI CCNNNNNNNGG 3 cut(s) 1615, 1674, 2201
BsmAI GTCTC 2 cut(s) 1149, 1940
BsmFI GGGAC 1 cut(s) 2399
BsmI GAATGC 3 cut(s) 607, 1557, 2344
BsnI GGCC 6 cut(s) 502, 537, 837, 1796, 2050, 2456
Bso31I GGTCTC 1 cut(s) 1149
BsoBI CYCGRG 1 cut(s) 1410
Bsp120I GGGCCC 1 cut(s) 500
Bsp1286I GDGCHC 3 cut(s) 414, 504, 2400
Bsp13I TCCGGA 2 cut(s) 1740, 2251
BspACI CCGC 4 cut(s) 1164, 1980, 2417, 2420
BspANI GGCC 6 cut(s) 502, 537, 837, 1796, 2050, 2456
BspCNI CTCAG 7 cut(s) 172, 521, 1388, 1528, 1951, 1988, 2482
BspDI ATCGAT 1 cut(s) 1061
BspEI TCCGGA 2 cut(s) 1740, 2251
BspLI GGNNCC 9 cut(s) 102, 502, 1093, 1177, 1438, 1795, 2193, 2288, 2446
BspMAI CTGCAG 1 cut(s) 713
BspMI ACCTGC 2 cut(s) 736, 1195
BspPI GGATC 5 cut(s) 508, 764, 947, 2281, 2294
BspT107I GGYRCC 1 cut(s) 2444
BspTNI GGTCTC 1 cut(s) 1149
BsrFI RCCGGY 1 cut(s) 2507
BsrI ACTGG 6 cut(s) 228, 269, 773, 1345, 1665, 2070
BssAI RCCGGY 1 cut(s) 2507
BssECI CCNNGG 3 cut(s) 531, 1610, 2450
BssNAI GTATAC 1 cut(s) 419
BssNI GRCGYC 1 cut(s) 1585
BssSI CACGAG 1 cut(s) 659
BssT1I CCWWGG 2 cut(s) 1610, 2450
Bst1107I GTATAC 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 7 cut(s) 157, 460, 844, 901, 1296, 1392, 1790
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 1585
BstAPI GCANNNNNTGC 3 cut(s) 914, 2105, 2348
BstBAI YACGTR 1 cut(s) 1571
BstC8I GCNNGC 1 cut(s) 1749
BstF5I GGATG 9 cut(s) 24, 77, 1036, 1153, 1219, 1307, 1620, 1624, 1749
BstMAI GTCTC 2 cut(s) 1149, 1940
BstMWI GCNNNNNNNGC 7 cut(s) 208, 914, 1015, 1753, 2105, 2231, 2348
BstNI CCWGG 1 cut(s) 1011
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 1009
BstSFI CTRYAG 4 cut(s) 709, 1275, 1468, 1827
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 8 cut(s) 342, 695, 1498, 2111, 2185, 2332, 2335, 2354
BstV2I GAAGAC 3 cut(s) 158, 267, 368
BstX2I RGATCY 6 cut(s) 24, 513, 769, 1250, 1279, 2286
BstYI RGATCY 6 cut(s) 24, 513, 769, 1250, 1279, 2286
BstZ17I GTATAC 1 cut(s) 419
Bsu15I ATCGAT 1 cut(s) 1061
BsuRI GGCC 6 cut(s) 502, 537, 837, 1796, 2050, 2456
BsuTUI ATCGAT 1 cut(s) 1061
BtsCI GGATG 9 cut(s) 24, 77, 1036, 1153, 1219, 1307, 1620, 1624, 1749
BtsI GCAGTG 3 cut(s) 718, 1480, 2103
BtsIMutI CAGTG 6 cut(s) 718, 897, 908, 1332, 1480, 2103
BveI ACCTGC 2 cut(s) 736, 1195
Cac8I GCNNGC 1 cut(s) 1749
CaiI CAGNNNCTG 6 cut(s) 358, 1010, 2105, 2201, 2225, 2348
Cfr10I RCCGGY 1 cut(s) 2507
Cfr13I GGNCC 9 cut(s) 100, 500, 501, 535, 1406, 1437, 1794, 2191, 2454
ClaI ATCGAT 1 cut(s) 1061
CseI GACGC 3 cut(s) 668, 1574, 2482
Csp6I GTAC 3 cut(s) 115, 158, 2173
CviAII CATG 4 cut(s) 83, 674, 1001, 2132
CviQI GTAC 3 cut(s) 115, 158, 2173
DraI TTTAAA 1 cut(s) 1495
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 1610, 2450
Eco147I AGGCCT 1 cut(s) 2050
Eco24I GRGCYC 2 cut(s) 414, 504
Eco31I GGTCTC 1 cut(s) 1149
Eco47I GGWCC 4 cut(s) 100, 1406, 1437, 2191
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 4 cut(s) 380, 1263, 1356, 2473
Eco88I CYCGRG 1 cut(s) 1410
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 2 cut(s) 535, 1437
EcoRII CCWGG 1 cut(s) 1009
EcoT14I CCWWGG 2 cut(s) 1610, 2450
EcoT22I ATGCAT 1 cut(s) 675
EcoT38I GRGCYC 2 cut(s) 414, 504
ErhI CCWWGG 2 cut(s) 1610, 2450
FaeI CATG 4 cut(s) 86, 677, 1004, 2135
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 276, 308
FaqI GGGAC 1 cut(s) 2399
FatI CATG 4 cut(s) 82, 673, 1000, 2131
FauI CCCGC 1 cut(s) 2424
FauNDI CATATG 3 cut(s) 435, 648, 1732
FblI GTMKAC 3 cut(s) 418, 1298, 1588
FokI GGATG 9 cut(s) 31, 64, 1023, 1140, 1226, 1294, 1611, 1627, 1756
FriOI GRGCYC 2 cut(s) 414, 504
GsaI CCCAGC 2 cut(s) 507, 2198
GsuI CTGGAG 2 cut(s) 776, 1366
HaeIII GGCC 6 cut(s) 502, 537, 837, 1796, 2050, 2456
HapII CCGG 4 cut(s) 1556, 1741, 2252, 2508
HgaI GACGC 3 cut(s) 668, 1574, 2482
Hin1I GRCGYC 1 cut(s) 1585
Hin1II CATG 4 cut(s) 86, 677, 1004, 2135
HincII GTYRAC 3 cut(s) 1054, 1589, 2212
HindII GTYRAC 3 cut(s) 1054, 1589, 2212
HindIII AAGCTT 1 cut(s) 541
HpaII CCGG 4 cut(s) 1556, 1741, 2252, 2508
HphI GGTGA 4 cut(s) 16, 1059, 1296, 2014
Hpy166II GTNNAC 6 cut(s) 100, 419, 1054, 1299, 1589, 2212
Hpy8I GTNNAC 6 cut(s) 100, 419, 1054, 1299, 1589, 2212
Hpy99I CGWCG 1 cut(s) 1590
HpyAV CCTTC 8 cut(s) 1001, 1134, 1166, 1602, 2025, 2249, 2253, 2399
HpyCH4III ACNGT 7 cut(s) 157, 460, 844, 901, 1296, 1392, 1790
HpyCH4IV ACGT 2 cut(s) 332, 1570
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 914, 1015, 1753, 2105, 2231, 2348
HpySE526I ACGT 2 cut(s) 332, 1570
Hsp92I GRCGYC 1 cut(s) 1585
Hsp92II CATG 4 cut(s) 86, 677, 1004, 2135
Kpn2I TCCGGA 2 cut(s) 1740, 2251
LmnI GCTCC 6 cut(s) 250, 757, 1599, 1824, 2403, 2408
Lsp1109I GCAGC 8 cut(s) 342, 695, 1498, 2111, 2185, 2332, 2335, 2354
MaeII ACGT 2 cut(s) 332, 1570
MaeIII GTNAC 7 cut(s) 227, 661, 1065, 1454, 1855, 2433, 2483
MboII GAAGA 7 cut(s) 143, 163, 230, 272, 371, 373, 1256
MfeI CAATTG 3 cut(s) 1902, 1920, 2268
MflI RGATCY 6 cut(s) 24, 513, 769, 1250, 1279, 2286
MhlI GDGCHC 3 cut(s) 414, 504, 2400
MlyI GAGTC 5 cut(s) 658, 938, 1019, 1067, 1672
MmeI TCCRAC 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 675
MroI TCCGGA 2 cut(s) 1740, 2251
MslI CAYNNNNRTG 2 cut(s) 95, 2502
MspA1I CMGCKG 3 cut(s) 355, 2198, 2345
MspI CCGG 4 cut(s) 1556, 1741, 2252, 2508
MspR9I CCNGG 1 cut(s) 1011
MunI CAATTG 3 cut(s) 1902, 1920, 2268
Mva1269I GAATGC 3 cut(s) 607, 1557, 2344
MvaI CCWGG 1 cut(s) 1011
MwoI GCNNNNNNNGC 7 cut(s) 208, 914, 1015, 1753, 2105, 2231, 2348
NdeI CATATG 3 cut(s) 435, 648, 1732
NlaIII CATG 4 cut(s) 86, 677, 1004, 2135
NlaIV GGNNCC 9 cut(s) 102, 502, 1093, 1177, 1438, 1795, 2193, 2288, 2446
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 5 cut(s) 227, 661, 1065, 1855, 2433
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 1410
PceI AGGCCT 1 cut(s) 2050
PctI GAATGC 3 cut(s) 607, 1557, 2344
PfeI GAWTC 8 cut(s) 176, 289, 308, 325, 553, 562, 886, 1832
PflMI CCANNNNNTGG 1 cut(s) 2201
PleI GAGTC 5 cut(s) 658, 937, 1019, 1067, 1672
PpsI GAGTC 5 cut(s) 658, 937, 1019, 1067, 1672
Ppu21I YACGTR 1 cut(s) 1571
PpuMI RGGWCCY 1 cut(s) 1437
PshBI ATTAAT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 1437
Psp6I CCWGG 1 cut(s) 1009
PspFI CCCAGC 2 cut(s) 503, 2194
PspGI CCWGG 1 cut(s) 1009
PspN4I GGNNCC 9 cut(s) 102, 502, 1093, 1177, 1438, 1795, 2193, 2288, 2446
PspOMI GGGCCC 1 cut(s) 500
PspPI GGNCC 9 cut(s) 100, 500, 501, 535, 1406, 1437, 1794, 2191, 2454
PspPPI RGGWCCY 1 cut(s) 1437
PstI CTGCAG 1 cut(s) 713
PstNI CAGNNNCTG 6 cut(s) 358, 1010, 2105, 2201, 2225, 2348
PsuI RGATCY 6 cut(s) 24, 513, 769, 1250, 1279, 2286
PvuII CAGCTG 3 cut(s) 355, 2198, 2345
RsaI GTAC 3 cut(s) 116, 159, 2174
RsaNI GTAC 3 cut(s) 115, 158, 2173
RseI CAYNNNNRTG 2 cut(s) 95, 2502
SacI GAGCTC 1 cut(s) 414
SalI GTCGAC 1 cut(s) 1587
Sau96I GGNCC 9 cut(s) 100, 500, 501, 535, 1406, 1437, 1794, 2191, 2454
ScaI AGTACT 2 cut(s) 116, 2174
SchI GAGTC 5 cut(s) 658, 938, 1019, 1067, 1672
ScrFI CCNGG 1 cut(s) 1011
SduI GDGCHC 3 cut(s) 414, 504, 2400
SfcI CTRYAG 4 cut(s) 709, 1275, 1468, 1827
Sfr274I CTCGAG 1 cut(s) 1410
SinI GGWCC 4 cut(s) 100, 1406, 1437, 2191
SlaI CTCGAG 1 cut(s) 1410
SmiMI CAYNNNNRTG 2 cut(s) 95, 2502
SmlI CTYRAG 5 cut(s) 236, 407, 544, 1410, 1943
SmoI CTYRAG 5 cut(s) 236, 407, 544, 1410, 1943
SseBI AGGCCT 1 cut(s) 2050
SsiI CCGC 4 cut(s) 1164, 1980, 2417, 2420
SspI AATATT 1 cut(s) 2127
SstI GAGCTC 1 cut(s) 414
StuI AGGCCT 1 cut(s) 2050
StyD4I CCNGG 1 cut(s) 1009
StyI CCWWGG 2 cut(s) 1610, 2450
TaaI ACNGT 7 cut(s) 157, 460, 844, 901, 1296, 1392, 1790
TaiI ACGT 2 cut(s) 335, 1573
TaqI TCGA 8 cut(s) 278, 551, 570, 1061, 1232, 1411, 1588, 2007
TaqII GACCGA 1 cut(s) 1071
TatI WGTACW 3 cut(s) 114, 157, 2172
TauI GCSGC 2 cut(s) 1982, 2422
TfiI GAWTC 8 cut(s) 176, 289, 308, 325, 553, 562, 886, 1832
TscAI CASTG 6 cut(s) 718, 904, 915, 1339, 1480, 2110
TseFI GTSAC 5 cut(s) 227, 661, 1065, 1855, 2433
TseI GCWGC 8 cut(s) 355, 708, 1511, 2099, 2198, 2342, 2345, 2348
Tsp45I GTSAC 5 cut(s) 227, 661, 1065, 1855, 2433
TspDTI ATGAA 7 cut(s) 66, 210, 402, 802, 1025, 1118, 1749
TspGWI ACGGA 1 cut(s) 1811
TspRI CASTG 6 cut(s) 718, 904, 915, 1339, 1480, 2110
Van91I CCANNNNNTGG 1 cut(s) 2201
VpaK11BI GGWCC 4 cut(s) 100, 1406, 1437, 2191
VspI ATTAAT 1 cut(s) 828
XapI RAATTY 2 cut(s) 1319, 1849
XceI RCATGY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 2 cut(s) 964, 1804
XhoI CTCGAG 1 cut(s) 1410
XmiI GTMKAC 3 cut(s) 418, 1298, 1588
ZrmI AGTACT 2 cut(s) 116, 2174
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.