Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003836

Physical Location & Seq

Genomic Coordinates Forward (+)

17483955 .. 17491293

Gene Structure 7339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGATATCGATGTTCAAAGCACTTCTTAATAAAATCTCCTCTTTTTTCCATTTTTCATCCCATGAGAACATAAATTTGGACCCTGTTCAGAAGTACTACAAAAAAACAGAAGAGATATTAAAATTGTTGAAGAATGTACTTGATGCCATTGTTGATTCTGAGATAGCTTCTTATGAAGTGCTTAATAAGCCATTTGAAGAACTGGGTCACTATGTTGATGAATTGAGGGAGCAATTTCAAGACTGGCAGCCATTGTTGAGTAAAGTGAATCTTGTTCTGCAAGTTGAATCATTGATATCAAAGATTTCGACTTGTAGCCTGGATGTCTTTCAGCTGCTGAAGACTTCTGAGCAACATCTCCCTGATGAATTGGGTTCAGCATCTCTTGAGCTCTGCATACAGAAACTAAAGCATATGAGCTATGAGCAAACATCAACTGTCATTAAAGATGCTATAAGTGATCTAGTGGAGGGTATTGCGCCTAGCTCAGAGATCCTAGTGAAAATTGCAGAGGGCCTTAGCTTGAGGTCGAATCAGGAGATCCTTATCGAGGCTGTGGCACTCGAAAAGCTGAAGGAGAATGCTGAACAATCTGAAAAGATCGAGGAAGCAGAATATATTGAGCATATGATAGCCCTCGTCACTCGTATGCATGAGCGTCTTATTACGATAAAGCAGTCTGAAAGCTGCAGCGCAGTTCCAATACCTGCTGATTTCTGCTGTCCTCTCTCTCTGGAGCTAATGACAGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGAGGACTTTCATCAAGAATTGGATTGATCTTGGCCTCACAGTTTGTCCTAAGACACGGCAGACTTTAGCTCACACCAATTTGATACCTAATTACACTGTAAAGGCACTGATTGCAAATTGGTGCGAGTCAAACAATGTGAAACTGCCTGATCCCACAAAGTCTGTGTGCTTAAATAAGCCAACACACCTTCTTGGACATGCAGAGCCTGGTGCGCCAAAGGACTCGCCCATTCTTCCTCATTCTAGGGTCAATTCATCAATGTCACCTGAGTCAACTCGATCTATGGGTTCCCCCACTAATAAATATATCTCATCTGGTGGATTGCATCGGGAAGGAAGTTCTCCATTCCATCCTCGTTCCGCATCAGAAGGTTCCTTGTCAGTAGCTGGAAATGGGCAGGTTTTGGATATCGCAAGAGTATCATCTACAAGTTCTGAAGACAGATCTGCCACTATAGATGAAAGGGGTACAGATCTAGTGAGCCAACAGTCTACATCACCATCCAGAAATGAATTTCCTATTCCTACTGAAGCCAAGCCAGTTGTCGCAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

447

Amino Acids

49.48

Weight (kDa)

5.35

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB2_N	PF25240	2 - 140	8.3e-60	PUB2-like, N-terminal domain
U-box	PF04564	236 - 306	2.1e-22	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23140 AT2G23140 AT2G23140 AT2G23140 AT2G23140 AT5G67340 AT5G67340
fragaria_vesca	FvH4_1g17050 FvH4_1g17050 FvH4_1g17050 FvH4_1g17050
malus_domestica	MD02G1180700.v1.1 MD15G1291600.v1.1
prunus_persica	Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1
pyrus_communis	pycom02g14670 pycom15g25510
rosa_chinensis	RchiOBHm_Chr2g0107211
rosa_laevigata	RLG00000017560
rosa_multiflora	Rmu_co8148606.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136540
rosa_rugosa	Rorug02G0140900 Rorug02G0140900 Rorug02G0140900
rosa_samantha	Rh2AG191600 Rh2BG203600 Rh2CG196800 Rh2DG198900
rosa_wichuraiana	Rw2G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	718, 1174
AccI	GTMKAC	1 cut(s)	1277
AciI	CCGC	1 cut(s)	1146
AclWI	GGATC	4 cut(s)	490, 538, 746, 929
AcsI	RAATTY	2 cut(s)	76, 1298
AcuI	CTGAAG	4 cut(s)	362, 596, 1242, 1335
AfaI	GTAC	3 cut(s)	98, 141, 1255
AfiI	CCNNNNNNNGG	2 cut(s)	553, 786
AgsI	TTSAA	5 cut(s)	19, 133, 200, 242, 290
AjnI	CCWGG	2 cut(s)	321, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	4 cut(s)	490, 538, 746, 929
AlwNI	CAGNNNCTG	3 cut(s)	340, 992, 1172
AoxI	GGCC	2 cut(s)	517, 817
ApeKI	GCWGC	4 cut(s)	250, 337, 690, 693
ApoI	RAATTY	2 cut(s)	76, 1298
AspLEI	GCGC	3 cut(s)	484, 698, 1000
AspS9I	GGNCC	2 cut(s)	82, 517
AsuHPI	GGTGA	2 cut(s)	1041, 1275
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	350, 1230
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	262, 324, 677, 705
BccI	CCATC	2 cut(s)	1143, 1294
BceAI	ACGGC	1 cut(s)	857
BciT130I	CCWGG	2 cut(s)	323, 993
BfaI	CTAG	5 cut(s)	467, 486, 500, 1029, 1262
BfmI	CTRYAG	2 cut(s)	691, 1239
BfuAI	ACCTGC	2 cut(s)	718, 1174
BglII	AGATCT	2 cut(s)	1229, 1258
BisI	GCNGC	4 cut(s)	251, 338, 691, 694
BlsI	GCNGC	4 cut(s)	252, 339, 692, 695
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	323, 993
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 517
BmiI	GGNNCC	3 cut(s)	84, 1075, 1159
BmrFI	CCNGG	2 cut(s)	323, 993
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	6 cut(s)	136, 392, 442, 776, 1120, 1157
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	350, 1230
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	2 cut(s)	410, 547
Bsa29I	ATCGAT	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 786
Bse1I	ACTGG	4 cut(s)	210, 251, 755, 1325
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	323, 993
BseCI	ATCGAT	1 cut(s)	11
BseGI	GGATG	4 cut(s)	59, 331, 1135, 1286
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	553, 786
BseMII	CTCAG	4 cut(s)	153, 342, 504, 1044
BseNI	ACTGG	4 cut(s)	210, 251, 755, 1325
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	262, 324, 677, 705
BshFI	GGCC	2 cut(s)	519, 819
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	553, 786
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	519, 819
Bsp1286I	GDGCHC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	1146
BspANI	GGCC	2 cut(s)	519, 819
BspCNI	CTCAG	4 cut(s)	154, 343, 503, 1045
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	84, 1075, 1159
BspMAI	CTGCAG	1 cut(s)	695
BspMI	ACCTGC	2 cut(s)	718, 1174
BspPI	GGATC	4 cut(s)	490, 538, 746, 929
BsrI	ACTGG	4 cut(s)	210, 251, 755, 1325
Bst2UI	CCWGG	2 cut(s)	323, 993
Bst4CI	ACNGT	4 cut(s)	442, 826, 883, 1275
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	896
BstDEI	CTNAG	6 cut(s)	162, 351, 490, 521, 834, 1053
BstENI	CCTNNNNNAGG	2 cut(s)	551, 784
BstF5I	GGATG	4 cut(s)	59, 331, 1135, 1286
BstHHI	GCGC	3 cut(s)	484, 698, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 896, 997
BstNI	CCWGG	2 cut(s)	323, 993
BstNSI	RCATGY	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	321, 991
BstSFI	CTRYAG	2 cut(s)	691, 1239
BstV1I	GCAGC	4 cut(s)	262, 324, 677, 705
BstV2I	GAAGAC	2 cut(s)	350, 1230
BstX2I	RGATCY	5 cut(s)	495, 543, 751, 1229, 1258
BstYI	RGATCY	5 cut(s)	495, 543, 751, 1229, 1258
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	519, 819
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	4 cut(s)	59, 331, 1135, 1286
BtsIMutI	CAGTG	3 cut(s)	762, 879, 890
BveI	ACCTGC	2 cut(s)	718, 1174
CaiI	CAGNNNCTG	3 cut(s)	340, 992, 1172
CfoI	GCGC	3 cut(s)	484, 698, 1000
Cfr13I	GGNCC	2 cut(s)	82, 517
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	3 cut(s)	97, 140, 1254
CviAII	CATG	3 cut(s)	65, 656, 983
CviQI	GTAC	3 cut(s)	97, 140, 1254
DdeI	CTNAG	6 cut(s)	162, 351, 490, 521, 834, 1053
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	396
Eco32I	GATATC	3 cut(s)	9, 300, 1195
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	4 cut(s)	362, 596, 1242, 1335
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	2 cut(s)	551, 784
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	321, 991
EcoRV	GATATC	3 cut(s)	9, 300, 1195
EcoT22I	ATGCAT	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	3 cut(s)	68, 659, 986
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 258, 290
FatI	CATG	3 cut(s)	64, 655, 982
FauNDI	CATATG	2 cut(s)	417, 630
FblI	GTMKAC	1 cut(s)	1277
Fnu4HI	GCNGC	4 cut(s)	251, 338, 691, 694
FokI	GGATG	4 cut(s)	46, 338, 1122, 1273
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	4 cut(s)	251, 338, 691, 694
FspBI	CTAG	5 cut(s)	467, 486, 500, 1029, 1262
GlaI	GCGC	3 cut(s)	483, 697, 999
GluI	GCNGC	4 cut(s)	251, 338, 691, 694
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	519, 819
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	3 cut(s)	484, 698, 1000
Hin1II	CATG	3 cut(s)	68, 659, 986
Hin6I	GCGC	3 cut(s)	482, 696, 998
HinP1I	GCGC	3 cut(s)	482, 696, 998
HincII	GTYRAC	1 cut(s)	1059
HindII	GTYRAC	1 cut(s)	1059
HinfI	GANTC	7 cut(s)	158, 271, 290, 535, 911, 1007, 1055
HphI	GGTGA	2 cut(s)	1041, 1275
Hpy166II	GTNNAC	2 cut(s)	1059, 1278
Hpy188I	TCNGA	8 cut(s)	93, 163, 352, 493, 598, 685, 1153, 1222
Hpy188III	TCNNGA	8 cut(s)	242, 389, 539, 737, 771, 799, 1115, 1290
Hpy8I	GTNNAC	2 cut(s)	1059, 1278
HpyAV	CCTTC	4 cut(s)	571, 983, 1112, 1148
HpyCH4III	ACNGT	4 cut(s)	442, 826, 883, 1275
HpyCH4V	TGCA	8 cut(s)	283, 399, 512, 655, 693, 899, 986, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 896, 997
HpyF3I	CTNAG	6 cut(s)	162, 351, 490, 521, 834, 1053
Hsp92II	CATG	3 cut(s)	68, 659, 986
HspAI	GCGC	3 cut(s)	482, 696, 998
LmnI	GCTCC	2 cut(s)	232, 739
Lsp1109I	GCAGC	4 cut(s)	262, 324, 677, 705
LweI	GCATC	6 cut(s)	136, 392, 442, 776, 1120, 1157
MaeI	CTAG	5 cut(s)	467, 486, 500, 1029, 1262
MaeIII	GTNAC	3 cut(s)	209, 643, 1047
MboII	GAAGA	6 cut(s)	125, 145, 212, 355, 1010, 1235
MflI	RGATCY	5 cut(s)	495, 543, 751, 1229, 1258
MhlI	GDGCHC	1 cut(s)	396
MlyI	GAGTC	3 cut(s)	920, 1001, 1064
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	5 cut(s)	30, 122, 186, 447, 956
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	323, 993
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	323, 993
MwoI	GCNNNNNNNGC	3 cut(s)	190, 896, 997
NdeI	CATATG	2 cut(s)	417, 630
NlaIII	CATG	3 cut(s)	68, 659, 986
NlaIV	GGNNCC	3 cut(s)	84, 1075, 1159
NmuCI	GTSAC	3 cut(s)	209, 643, 1047
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	1 cut(s)	986
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	4 cut(s)	158, 271, 290, 535
PkrI	GCNGC	4 cut(s)	252, 339, 692, 695
PleI	GAGTC	3 cut(s)	919, 1001, 1063
PpsI	GAGTC	3 cut(s)	919, 1001, 1063
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	321, 991
PspGI	CCWGG	2 cut(s)	321, 991
PspN4I	GGNNCC	3 cut(s)	84, 1075, 1159
PspPI	GGNCC	2 cut(s)	82, 517
PstI	CTGCAG	1 cut(s)	695
PstNI	CAGNNNCTG	3 cut(s)	340, 992, 1172
PsuI	RGATCY	5 cut(s)	495, 543, 751, 1229, 1258
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	3 cut(s)	98, 141, 1255
RsaNI	GTAC	3 cut(s)	97, 140, 1254
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	30, 122, 186, 447, 956
SatI	GCNGC	4 cut(s)	251, 338, 691, 694
Sau96I	GGNCC	2 cut(s)	82, 517
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	3 cut(s)	920, 1001, 1064
ScrFI	CCNGG	2 cut(s)	323, 993
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	6 cut(s)	136, 392, 442, 776, 1120, 1157
SfcI	CTRYAG	2 cut(s)	691, 1239
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	389, 526
SmoI	CTYRAG	2 cut(s)	389, 526
SsiI	CCGC	1 cut(s)	1146
SspMI	CTAG	5 cut(s)	467, 486, 500, 1029, 1262
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	321, 991
TaaI	ACNGT	4 cut(s)	442, 826, 883, 1275
TaqI	TCGA	7 cut(s)	11, 311, 533, 552, 567, 606, 1063
TatI	WGTACW	2 cut(s)	96, 139
TfiI	GAWTC	4 cut(s)	158, 271, 290, 535
Tru1I	TTAA	5 cut(s)	30, 122, 186, 447, 956
Tru9I	TTAA	5 cut(s)	30, 122, 186, 447, 956
TscAI	CASTG	3 cut(s)	762, 886, 897
TseFI	GTSAC	3 cut(s)	209, 643, 1047
TseI	GCWGC	4 cut(s)	250, 337, 690, 693
Tsp45I	GTSAC	3 cut(s)	209, 643, 1047
TspDTI	ATGAA	8 cut(s)	48, 192, 237, 384, 784, 1029, 1260, 1311
TspRI	CASTG	3 cut(s)	762, 886, 897
VpaK11BI	GGWCC	1 cut(s)	82
XagI	CCTNNNNNAGG	2 cut(s)	551, 784
XapI	RAATTY	2 cut(s)	76, 1298
XceI	RCATGY	1 cut(s)	986
XmiI	GTMKAC	1 cut(s)	1277
XspI	CTAG	5 cut(s)	467, 486, 500, 1029, 1262
ZrmI	AGTACT	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.