MD15G1291600.v1.1

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003836
Physical Location & Seq
Forward (+)
26996814 .. 27003278
6465 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1291600.v1.1.491

Sequence Viewer

Length: 2514 bp
ATGGAGATATCATTGTTCAAAGCACTTCTTAACAACATCTCCTCTTTTTTCCATTTATCATCTCATGACAACATAAACTTTGACCCGGTTCTGAAGTACTACAAAAGAGCCGAAGAGATATTAAAACTGTTGAAGATTGTACTTGATGCCATTGCTGATTCTGAAATAGCTTCTTATGAACTACTTAATAAGCCATTTGAGGAACTGGGTCAGTATGTTGATGAGTTGAGGGAGCAAATTGAAGACTGGCAGCCATTGTTTAGTAAAGTCAATCTTGTTCTTCAAGTTGAATCGTTGATATCAAAGATTTGGGCTTCTGGCCTGGATATCTTTCAACTGTTGAAAACTTCCCCGCAGCATCTTCCTGATGAAATGGGTTCAGCATCTCTTGAGCAATGTATACAAAAACTTGAGCACATGGGCTATGAACAAATGTCAACTGTCATTAAAGATGCTATAAGCGATCAAGTGGAGGGTGTTGGACCAAGCTCAGAGATCCTAGTGAAAATTGCAGAGGGCCTTAGCTTGAAGTCAAACCAGGAGATTCTTATTGAGGCTGTAGCACTTGAAAAGTTGAAGGAGAATGCTGAACAATCTGAAAAGATTGAGGAAGCGGAGTATATTGAGCAAATGATATCCCTTGTTACCCGTATGCACGAGCGCCTTATTACCATAAAGCAAGCTGAGAGCTGCAGCCCAGTTCCAATACCTGCTGATTTCTGTTGCCCCCTCTCTCTGGAGCTGATGACGGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGAGAACTTTCATCAAGAACTGGATCGGTCTTGGCCTCACTGTTTGTCCAAAGACGCGGCAGACTTTGGCTCACACCAATTTGATACCTAATTACACTGTAAAGGCACTAATTGCAAATTGGTGTGAGTCAAACAATGTGAAACTGCCTGATCCGATAAAGTCTGTTGGCTTAAATAAGTCAGCACACCTTCTTGGGCATGCAGAGCCTGGTACACCAAAGGATTCTCCTATTTTTTCTCATTCCAGGGTCAATCAATCAATGTCACCTGAGTCTACTCGGTCTACTGGTTTGCCCTCTAAGAACATGTTTTCATCTGGTCCACTGCATCAGGAGAGAATTTCTCCATTGCATCCTCGTTCAACATCAGAAGGTTCCTTGCCTGGTATAGTTGGAAATGGGCAGGCTTTGGATATTGAAAGAATATCACTAGCAAATTCTGAAGACAGGTCTGCCAACTTAGAAGAAAGGAGTACAGATCTAGATAGCCAGCACTCTCTGTCGCCATCTCGAGATGAACTTCCTAATTCCATTGAAGATGAGCAGCCATCTCAAAGCCATAATAGAACTGCATCAGCTTCTAGCGTACTTTTTAATGCCAATGGTACTCAAGGAACTTCAGTCAATGCCAATGGGGTCTTACAGGTATCGACGAATCTGTCAGGCTACAGCAGTGACGCTTCTGGGGAGTTGAAATCACAAGCACAAACTGTTGCTCCCTTGGCCCCCCAACAGAGAGAAACTGAGTCGCCAACCAGAATGGCAGAGTCAAGACCTCGAAACCAAATGTGGCGCCGACCATCTAGCTTAATCCCAAGGATAGTTTCTTCTCCACCTATTGAAACAAGGCCTGATCTTTCTGAACTTGAAGCCCAAGTTCGTAACCTAGTTGATGATTTGAAAAGCACTTCACTTGATACACAAAGAGAGGCAACATTTCAACTCCGGCTACTTGCCAAACATAATATGGATAATCGGATTGTTATTGCAAATTGTGGGGCCATTGGCTTGTTGGTGGATTTGCTCCGCTCTACAGATACAAGAGTTCAAGAGAATGCCGTCACAGCACTTCTTAACTTATCGATTAATGATAACAACAAAACTGCAATTGCCACTGCCAATGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGGAGTGCTGAGGCCAAGGAGAACTCAGCTGCCACTCTATTTAGCCTTTCGGTGATCGAGGACAACAAGGTTCGTATTGGAAGGTCAGGGGCTATCGGGCCTCTGGTTGATTTATTGGGGAATGGGAGTCCCAGAGGGAGGAAAGATGCAGCCACAGCTTTGTTTAATTTGTCAATTTTTCATGAGAACAAGGGTCGAATTGTTCAAGCTGGTGCTGTAAAGTACCTAGTGGAGTTGATGGACCCTGCGGCTGGAATGGTTGACAAGGCAGTTGCTGTTTTGGCTAATCTTTCGACAATTCCCGAGGGAAGGACAGCAATTGGTCAGGAGGGTGGGATCCCTGTTCTTGTCGAGGTTGTTGAGTTGGGTTCTCCAAGAGGGAAGGAGAACGCTGCTGCTGCTCTTTTACAGCTCTGCACAAACGTTAATAGATATTGCAGTCAGGTCCTCCAAGAAGGAGCTGTCCCACCATTAGTGGTATTGTCACAATCCGGCACCCCTAGGGCAAAAGAAAAGGCACAGACACTCCTTAGCTACTTCAGAAACCATAGACAAGGTAATGCTGGTAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

838

Amino Acids

91.22

Weight (kDa)

5.39

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB2_N PF25240 2 - 141 1.8e-60 PUB2-like, N-terminal domain
U-box PF04564 236 - 306 1.6e-21 U-box domain
ARM_PUB PF25598 553 - 829 9.7e-29 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 554 - 726 7e-09 ARMC5
Arm PF00514 585 - 622 2.2e-10 Armadillo/beta-catenin-like repeat
Arm PF00514 667 - 704 8.9e-07 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 698 - 824 3.4e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1441
Acc36I ACCTGC 1 cut(s) 718
AccB1I GGYRCC 2 cut(s) 1575, 2432
AccBSI CCGCTC 1 cut(s) 1812
AccI GTMKAC 3 cut(s) 400, 1058, 1067
AccII CGCG 1 cut(s) 841
AciI CCGC 5 cut(s) 353, 614, 841, 1810, 2186
AclI AACGTT 1 cut(s) 2361
AclWI GGATC 7 cut(s) 490, 746, 759, 815, 929, 2269, 2282
AcsI RAATTY 2 cut(s) 1122, 1219
AcuI CTGAAG 4 cut(s) 113, 1245, 1386, 2461
AcyI GRCGYC 1 cut(s) 1576
AfaI GTAC 7 cut(s) 98, 141, 997, 1258, 1371, 1390, 2162
AfiI CCNNNNNNNGG 4 cut(s) 736, 2076, 2189, 2247
AflIII ACRYGT 1 cut(s) 1089
AjnI CCWGG 5 cut(s) 321, 537, 991, 1028, 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 1591, 1623
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 1928
AlwI GGATC 7 cut(s) 490, 746, 759, 815, 929, 2269, 2282
AlwNI CAGNNNCTG 2 cut(s) 992, 2213
Ama87I CYCGRG 2 cut(s) 1293, 2240
AoxI GGCC 8 cut(s) 319, 517, 817, 1506, 1631, 1782, 1950, 2036
ApoI RAATTY 2 cut(s) 1122, 1219
AseI ATTAAT 1 cut(s) 1869
AspA2I CCTAGG 1 cut(s) 2438
AspLEI GCGC 2 cut(s) 663, 1578
AspS9I GGNCC 8 cut(s) 482, 517, 1103, 1507, 1782, 2036, 2179, 2383
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 1041, 2002
AvaI CYCGRG 2 cut(s) 1293, 2240
AvaII GGWCC 4 cut(s) 482, 1103, 2179, 2383
AvrII CCTAGG 1 cut(s) 2438
BaeI ACNNNNGTAYC 2 cut(s) 1812, 1845
BamHI GGATCC 2 cut(s) 751, 2274
BanI GGYRCC 2 cut(s) 1575, 2432
BauI CACGAG 1 cut(s) 656
BbsI GAAGAC 2 cut(s) 249, 1233
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 1947
BccI CCATC 4 cut(s) 1297, 1339, 1591, 2170
BceAI ACGGC 1 cut(s) 1826
BciT130I CCWGG 5 cut(s) 323, 539, 993, 1030, 1167
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 1928
BfaI CTAG 8 cut(s) 500, 1214, 1265, 1365, 1587, 1670, 2165, 2439
BfmI CTRYAG 4 cut(s) 558, 691, 1450, 1815
BfoI RGCGCY 2 cut(s) 664, 1579
BfuAI ACCTGC 1 cut(s) 718
BglII AGATCT 1 cut(s) 1261
BlnI CCTAGG 1 cut(s) 2438
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 6 cut(s) 86, 323, 539, 993, 1030, 1167
Bme18I GGWCC 4 cut(s) 482, 1103, 2179, 2383
BmeT110I CYCGRG 2 cut(s) 1293, 2240
BmgT120I GGNCC 8 cut(s) 482, 517, 1103, 1507, 1782, 2036, 2179, 2383
BmiI GGNNCC 8 cut(s) 753, 1159, 1509, 1577, 1783, 2181, 2276, 2434
BmrFI CCNGG 6 cut(s) 86, 323, 539, 993, 1030, 1167
BmrI ACTGGG 2 cut(s) 215, 692
BmsI GCATC 9 cut(s) 136, 367, 392, 442, 776, 1120, 1144, 1364, 2074
BmuI ACTGGG 2 cut(s) 215, 692
BpiI GAAGAC 2 cut(s) 249, 1233
BplI GAGNNNNNCTC 2 cut(s) 1111, 1143
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 3 cut(s) 521, 1947, 2468
BpuEI CTTGAG 4 cut(s) 410, 431, 1377, 1952
BpuMI CCSGG 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 1865
BsaHI GRCGYC 1 cut(s) 1576
BsaJI CCNNGG 6 cut(s) 1029, 1503, 1598, 1953, 2241, 2438
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 1483, 1513, 2448, 2478
Bsc4I CCNNNNNNNGG 4 cut(s) 736, 2076, 2189, 2247
Bse1I ACTGG 6 cut(s) 210, 251, 698, 755, 809, 1075
Bse3DI GCAATG 3 cut(s) 150, 401, 1130
BseBI CCWGG 5 cut(s) 323, 539, 993, 1030, 1167
BseCI ATCGAT 1 cut(s) 1865
BseDI CCNNGG 6 cut(s) 1029, 1503, 1598, 1953, 2241, 2438
BseGI GGATG 1 cut(s) 1135
BseLI CCNNNNNNNGG 4 cut(s) 736, 2076, 2189, 2247
BseMI GCAATG 3 cut(s) 150, 401, 1130
BseMII CTCAG 6 cut(s) 504, 675, 1044, 1518, 1938, 1977
BseNI ACTGG 6 cut(s) 210, 251, 698, 755, 809, 1075
BseRI GAGGAG 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 2338
Bsh1236I CGCG 1 cut(s) 841
BshFI GGCC 8 cut(s) 321, 519, 819, 1508, 1633, 1784, 1952, 2038
BshNI GGYRCC 2 cut(s) 1575, 2432
BshVI ATCGAT 1 cut(s) 1865
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 1293, 2240
BsiSI CCGG 3 cut(s) 86, 1729, 2430
BslFI GGGAC 2 cut(s) 2052, 2387
BslI CCNNNNNNNGG 4 cut(s) 736, 2076, 2189, 2247
BsmAI GTCTC 1 cut(s) 1928
BsmFI GGGAC 2 cut(s) 2052, 2387
BsmI GAATGC 2 cut(s) 589, 1843
BsnI GGCC 8 cut(s) 321, 519, 819, 1508, 1633, 1784, 1952, 2038
BsoBI CYCGRG 2 cut(s) 1293, 2240
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
BspACI CCGC 5 cut(s) 353, 614, 841, 1810, 2186
BspANI GGCC 8 cut(s) 321, 519, 819, 1508, 1633, 1784, 1952, 2038
BspCNI CTCAG 6 cut(s) 503, 676, 1045, 1519, 1939, 1976
BspDI ATCGAT 1 cut(s) 1865
BspFNI CGCG 1 cut(s) 841
BspHI TCATGA 2 cut(s) 64, 2119
BspLI GGNNCC 8 cut(s) 753, 1159, 1509, 1577, 1783, 2181, 2276, 2434
BspMAI CTGCAG 1 cut(s) 695
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 7 cut(s) 490, 746, 759, 815, 929, 2269, 2282
BspT107I GGYRCC 2 cut(s) 1575, 2432
BsrBI CCGCTC 1 cut(s) 1812
BsrDI GCAATG 3 cut(s) 150, 401, 1130
BsrI ACTGG 6 cut(s) 210, 251, 698, 755, 809, 1075
BssECI CCNNGG 6 cut(s) 1029, 1503, 1598, 1953, 2241, 2438
BssMI GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
BssNAI GTATAC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 1576
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 4 cut(s) 1503, 1598, 1953, 2438
Bst1107I GTATAC 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 5 cut(s) 323, 539, 993, 1030, 1167
Bst4CI ACNGT 6 cut(s) 129, 339, 442, 826, 883, 1495
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 1576
BstAPI GCANNNNNTGC 1 cut(s) 896
BstC8I GCNNGC 4 cut(s) 681, 984, 1188, 1274
BstF5I GGATG 1 cut(s) 1135
BstFNI CGCG 1 cut(s) 841
BstH2I RGCGCY 2 cut(s) 664, 1579
BstHHI GCGC 2 cut(s) 663, 1578
BstKTI GATC 9 cut(s) 466, 498, 754, 810, 937, 1264, 1639, 1995, 2277
BstMAI GTCTC 1 cut(s) 1928
BstMBI GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
BstMWI GCNNNNNNNGC 7 cut(s) 896, 988, 1505, 1847, 2093, 2219, 2336
BstNI CCWGG 5 cut(s) 323, 539, 993, 1030, 1167
BstNSI RCATGY 2 cut(s) 986, 1093
BstSCI CCNGG 6 cut(s) 84, 321, 537, 991, 1028, 1165
BstSFI CTRYAG 4 cut(s) 558, 691, 1450, 1815
BstUI CGCG 1 cut(s) 841
BstV2I GAAGAC 2 cut(s) 249, 1233
BstX2I RGATCY 4 cut(s) 495, 751, 1261, 2274
BstYI RGATCY 4 cut(s) 495, 751, 1261, 2274
BstZ17I GTATAC 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 1865
BsuRI GGCC 8 cut(s) 321, 519, 819, 1508, 1633, 1784, 1952, 2038
BsuTUI ATCGAT 1 cut(s) 1865
BtsCI GGATG 1 cut(s) 1135
BtsI GCAGTG 3 cut(s) 1106, 1462, 1896
BtsIMutI CAGTG 6 cut(s) 762, 822, 879, 1106, 1462, 1896
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 4 cut(s) 681, 984, 1188, 1274
CaiI CAGNNNCTG 2 cut(s) 992, 2213
CciI TCATGA 2 cut(s) 64, 2119
CfoI GCGC 2 cut(s) 663, 1578
Cfr13I GGNCC 8 cut(s) 482, 517, 1103, 1507, 1782, 2036, 2179, 2383
ClaI ATCGAT 1 cut(s) 1865
CseI GACGC 2 cut(s) 847, 1469
Csp6I GTAC 7 cut(s) 97, 140, 996, 1257, 1370, 1389, 2161
CviAII CATG 6 cut(s) 65, 418, 983, 1090, 1925, 2120
CviQI GTAC 7 cut(s) 97, 140, 996, 1257, 1370, 1389, 2161
DinI GGCGCC 1 cut(s) 1577
DpnI GATC 9 cut(s) 465, 497, 753, 809, 936, 1263, 1638, 1994, 2276
DpnII GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
DrdI GACNNNNNNGTC 1 cut(s) 1441
DseDI GACNNNNNNGTC 1 cut(s) 1441
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 4 cut(s) 1503, 1598, 1953, 2438
Eco147I AGGCCT 1 cut(s) 1633
Eco32I GATATC 4 cut(s) 9, 300, 328, 636
Eco47I GGWCC 4 cut(s) 482, 1103, 2179, 2383
Eco57I CTGAAG 4 cut(s) 113, 1245, 1386, 2461
Eco88I CYCGRG 2 cut(s) 1293, 2240
EcoO109I RGGNCCY 2 cut(s) 517, 2383
EcoRII CCWGG 5 cut(s) 321, 537, 991, 1028, 1165
EcoRV GATATC 4 cut(s) 9, 300, 328, 636
EcoT14I CCWWGG 4 cut(s) 1503, 1598, 1953, 2438
EgeI GGCGCC 1 cut(s) 1577
EheI GGCGCC 1 cut(s) 1577
ErhI CCWWGG 4 cut(s) 1503, 1598, 1953, 2438
FaeI CATG 6 cut(s) 68, 421, 986, 1093, 1928, 2123
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 258, 290
FaqI GGGAC 2 cut(s) 2052, 2387
FatI CATG 6 cut(s) 64, 417, 982, 1089, 1924, 2119
FauI CCCGC 1 cut(s) 360
FblI GTMKAC 3 cut(s) 400, 1058, 1067
FokI GGATG 1 cut(s) 1122
FspBI CTAG 8 cut(s) 500, 1214, 1265, 1365, 1587, 1670, 2165, 2439
GlaI GCGC 2 cut(s) 662, 1577
GsuI CTGGAG 1 cut(s) 758
HaeII RGCGCY 2 cut(s) 664, 1579
HaeIII GGCC 8 cut(s) 321, 519, 819, 1508, 1633, 1784, 1952, 2038
HapII CCGG 3 cut(s) 86, 1729, 2430
HgaI GACGC 2 cut(s) 847, 1469
HhaI GCGC 2 cut(s) 663, 1578
Hin1I GRCGYC 1 cut(s) 1576
Hin1II CATG 6 cut(s) 68, 421, 986, 1093, 1928, 2123
Hin6I GCGC 2 cut(s) 661, 1576
HinP1I GCGC 2 cut(s) 661, 1576
HincII GTYRAC 2 cut(s) 438, 2200
HindII GTYRAC 2 cut(s) 438, 2200
HpaII CCGG 3 cut(s) 86, 1729, 2430
HphI GGTGA 2 cut(s) 1041, 2002
Hpy166II GTNNAC 7 cut(s) 401, 438, 998, 1059, 1068, 1106, 2200
Hpy8I GTNNAC 7 cut(s) 401, 438, 998, 1059, 1068, 1106, 2200
Hpy99I CGWCG 1 cut(s) 1438
HpyAV CCTTC 7 cut(s) 571, 983, 1148, 2013, 2241, 2314, 2387
HpyCH4III ACNGT 6 cut(s) 129, 339, 442, 826, 883, 1495
HpyCH4IV ACGT 1 cut(s) 2361
HpyF10VI GCNNNNNNNGC 7 cut(s) 896, 988, 1505, 1847, 2093, 2219, 2336
HpySE526I ACGT 1 cut(s) 2361
Hsp92I GRCGYC 1 cut(s) 1576
Hsp92II CATG 6 cut(s) 68, 421, 986, 1093, 1928, 2123
HspAI GCGC 2 cut(s) 661, 1576
KasI GGCGCC 1 cut(s) 1575
Kzo9I GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
LmnI GCTCC 5 cut(s) 232, 739, 1504, 1812, 2396
LweI GCATC 9 cut(s) 136, 367, 392, 442, 776, 1120, 1144, 1364, 2074
MaeI CTAG 8 cut(s) 500, 1214, 1265, 1365, 1587, 1670, 2165, 2439
MaeII ACGT 1 cut(s) 2361
MaeIII GTNAC 6 cut(s) 643, 1047, 1457, 1664, 1843, 2421
MalI GATC 9 cut(s) 465, 497, 753, 809, 936, 1263, 1638, 1994, 2276
MbiI CCGCTC 1 cut(s) 1812
MboI GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
MboII GAAGA 9 cut(s) 125, 145, 254, 272, 353, 1238, 1259, 1331, 1602
MfeI CAATTG 3 cut(s) 1890, 1908, 2256
MflI RGATCY 4 cut(s) 495, 751, 1261, 2274
MhlI GDGCHC 1 cut(s) 417
Mly113I GGCGCC 1 cut(s) 1576
MlyI GAGTC 5 cut(s) 920, 1064, 1538, 1559, 2074
MmeI TCCRAC 2 cut(s) 460, 1156
MspA1I CMGCKG 1 cut(s) 1967
MspI CCGG 3 cut(s) 86, 1729, 2430
MspR9I CCNGG 6 cut(s) 86, 323, 539, 993, 1030, 1167
MunI CAATTG 3 cut(s) 1890, 1908, 2256
Mva1269I GAATGC 2 cut(s) 589, 1843
MvaI CCWGG 5 cut(s) 323, 539, 993, 1030, 1167
MvnI CGCG 1 cut(s) 841
MwoI GCNNNNNNNGC 7 cut(s) 896, 988, 1505, 1847, 2093, 2219, 2336
NarI GGCGCC 1 cut(s) 1576
NciI CCSGG 1 cut(s) 86
NdeII GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
NlaIII CATG 6 cut(s) 68, 421, 986, 1093, 1928, 2123
NlaIV GGNNCC 8 cut(s) 753, 1159, 1509, 1577, 1783, 2181, 2276, 2434
NmuCI GTSAC 4 cut(s) 1047, 1457, 1843, 2421
NspI RCATGY 2 cut(s) 986, 1093
PaeI GCATGC 1 cut(s) 986
PaeR7I CTCGAG 1 cut(s) 1293
PagI TCATGA 2 cut(s) 64, 2119
PceI AGGCCT 1 cut(s) 1633
PciI ACATGT 1 cut(s) 1089
PctI GAATGC 2 cut(s) 589, 1843
PfeI GAWTC 6 cut(s) 158, 290, 544, 1007, 1438, 1921
PleI GAGTC 5 cut(s) 919, 1063, 1537, 1558, 2073
PluTI GGCGCC 1 cut(s) 1579
PpsI GAGTC 5 cut(s) 919, 1063, 1537, 1558, 2073
PpuMI RGGWCCY 1 cut(s) 2383
PscI ACATGT 1 cut(s) 1089
PshBI ATTAAT 1 cut(s) 1869
Psp1406I AACGTT 1 cut(s) 2361
Psp5II RGGWCCY 1 cut(s) 2383
Psp6I CCWGG 5 cut(s) 321, 537, 991, 1028, 1165
PspGI CCWGG 5 cut(s) 321, 537, 991, 1028, 1165
PspN4I GGNNCC 8 cut(s) 753, 1159, 1509, 1577, 1783, 2181, 2276, 2434
PspPI GGNCC 8 cut(s) 482, 517, 1103, 1507, 1782, 2036, 2179, 2383
PspPPI RGGWCCY 1 cut(s) 2383
PstI CTGCAG 1 cut(s) 695
PstNI CAGNNNCTG 2 cut(s) 992, 2213
PsuI RGATCY 4 cut(s) 495, 751, 1261, 2274
PvuII CAGCTG 1 cut(s) 1967
RsaI GTAC 7 cut(s) 98, 141, 997, 1258, 1371, 1390, 2162
RsaNI GTAC 7 cut(s) 97, 140, 996, 1257, 1370, 1389, 2161
Sau3AI GATC 9 cut(s) 463, 495, 751, 807, 934, 1261, 1636, 1992, 2274
Sau96I GGNCC 8 cut(s) 482, 517, 1103, 1507, 1782, 2036, 2179, 2383
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 5 cut(s) 920, 1064, 1538, 1559, 2074
ScrFI CCNGG 6 cut(s) 86, 323, 539, 993, 1030, 1167
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 9 cut(s) 136, 367, 392, 442, 776, 1120, 1144, 1364, 2074
SfcI CTRYAG 4 cut(s) 558, 691, 1450, 1815
SfoI GGCGCC 1 cut(s) 1577
Sfr274I CTCGAG 1 cut(s) 1293
SinI GGWCC 4 cut(s) 482, 1103, 2179, 2383
SlaI CTCGAG 1 cut(s) 1293
SmlI CTYRAG 5 cut(s) 389, 410, 1293, 1392, 1931
SmoI CTYRAG 5 cut(s) 389, 410, 1293, 1392, 1931
SphI GCATGC 1 cut(s) 986
SseBI AGGCCT 1 cut(s) 1633
SsiI CCGC 5 cut(s) 353, 614, 841, 1810, 2186
SspDI GGCGCC 1 cut(s) 1575
SspMI CTAG 8 cut(s) 500, 1214, 1265, 1365, 1587, 1670, 2165, 2439
StuI AGGCCT 1 cut(s) 1633
StyD4I CCNGG 6 cut(s) 84, 321, 537, 991, 1028, 1165
StyI CCWWGG 4 cut(s) 1503, 1598, 1953, 2438
TaaI ACNGT 6 cut(s) 129, 339, 442, 826, 883, 1495
TaiI ACGT 1 cut(s) 2364
TaqI TCGA 8 cut(s) 1294, 1433, 1561, 1865, 1995, 2134, 2231, 2289
TaqII GACCGA 2 cut(s) 800, 1053
TatI WGTACW 3 cut(s) 96, 139, 1256
TauI GCSGC 2 cut(s) 844, 2189
TfiI GAWTC 6 cut(s) 158, 290, 544, 1007, 1438, 1921
TscAI CASTG 6 cut(s) 762, 829, 886, 1113, 1462, 1903
TseFI GTSAC 4 cut(s) 1047, 1457, 1843, 2421
Tsp45I GTSAC 4 cut(s) 1047, 1457, 1843, 2421
TspDTI ATGAA 8 cut(s) 192, 384, 441, 784, 1086, 1314, 1913, 2108
TspGWI ACGGA 1 cut(s) 764
TspRI CASTG 6 cut(s) 762, 829, 886, 1113, 1462, 1903
VpaK11BI GGWCC 4 cut(s) 482, 1103, 2179, 2383
VspI ATTAAT 1 cut(s) 1869
XapI RAATTY 2 cut(s) 1122, 1219
XbaI TCTAGA 1 cut(s) 1264
XceI RCATGY 2 cut(s) 986, 1093
XcmI CCANNNNNNNNNTGG 2 cut(s) 1747, 1792
XhoI CTCGAG 1 cut(s) 1293
XmaJI CCTAGG 1 cut(s) 2438
XmiI GTMKAC 3 cut(s) 400, 1058, 1067
XspI CTAG 8 cut(s) 500, 1214, 1265, 1365, 1587, 1670, 2165, 2439
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.