Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8148606.1

Orthogroup ID

OG0003836

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 563

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8148606.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

cgtcttattacgataaagcagtctgaaagctgcagcgcagttccaatacctgctgatttctgctgtcctctctctctggagctgatgacagatccagtgattgtggcatcaggacaaacctatgagaggactttcatcaagaattggattgatcttggcctcacagtttgtcctaagacacggcagactttagctcacaccaatttgatacctaattacactgtaaaggcactgattgcaaattggtgcgagtcaaacaatgtgaaactgcctgatcccacaaagtctgtgtgcttaaataagccaacacaccttcttggacatgcagagcctggcgcgccaaaggactcgcccattcttcctcattctagggtcaattcatcaatgtcacctgagaagttctccattccatcctcgttccgcatcagaaggttccttgtcagtagctggaaatgggcaggttttggatatcgcaagagtatcatctacaagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

165

Amino Acids

18.49

Weight (kDa)

9.45

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23140 AT2G23140 AT2G23140 AT2G23140 AT2G23140 AT5G67340 AT5G67340
fragaria_vesca	FvH4_1g17050 FvH4_1g17050 FvH4_1g17050 FvH4_1g17050
malus_domestica	MD02G1180700.v1.1 MD15G1291600.v1.1
prunus_persica	Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1 Prupe.6G225600_v2.0.a1
pyrus_communis	pycom02g14670 pycom15g25510
rosa_chinensis	RchiOBHm_Chr2g0107211
rosa_laevigata	RLG00000017560
rosa_multiflora	Rmu_co8148606.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136540
rosa_rugosa	Rorug02G0140900 Rorug02G0140900 Rorug02G0140900
rosa_samantha	Rh2AG191600 Rh2BG203600 Rh2CG196800 Rh2DG198900
rosa_wichuraiana	Rw2G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	58, 449
AccII	CGCG	1 cut(s)	338
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	86, 269
AfiI	CCNNNNNNNGG	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	30, 82, 194, 447
AluI	AGCT	4 cut(s)	30, 82, 194, 447
AlwI	GGATC	2 cut(s)	86, 269
AlwNI	CAGNNNCTG	2 cut(s)	332, 447
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	30, 33
AscI	GGCGCGCC	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	38, 338, 340
AsuHPI	GGTGA	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	17, 45
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	333
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	31
BfuAI	ACCTGC	2 cut(s)	58, 449
BisI	GCNGC	2 cut(s)	31, 34
BlsI	GCNGC	2 cut(s)	32, 35
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	116, 432
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	95
BsePI	GCGCGC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	17, 45
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	91, 151, 274
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	434
BspMAI	CTGCAG	1 cut(s)	35
BspMI	ACCTGC	2 cut(s)	58, 449
BspPI	GGATC	2 cut(s)	86, 269
BsrI	ACTGG	1 cut(s)	95
BssHII	GCGCGC	1 cut(s)	336
BssMI	GATC	3 cut(s)	91, 151, 274
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	166, 223
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	174, 393
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	3 cut(s)	38, 338, 340
BstKTI	GATC	3 cut(s)	94, 154, 277
BstMBI	GATC	3 cut(s)	91, 151, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 337
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	17, 45
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	102, 219, 230
BveI	ACCTGC	2 cut(s)	58, 449
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	2 cut(s)	332, 447
CfoI	GCGC	3 cut(s)	38, 338, 340
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	7 cut(s)	30, 82, 159, 194, 304, 331, 447
CviKI_1	RGCY	7 cut(s)	30, 82, 159, 194, 304, 331, 447
DdeI	CTNAG	2 cut(s)	174, 393
DpnI	GATC	3 cut(s)	93, 153, 276
DpnII	GATC	3 cut(s)	91, 151, 274
Eco32I	GATATC	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	470
FaeI	CATG	1 cut(s)	326
FaiI	YATR	2 cut(s)	123, 324
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	31, 34
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	31, 34
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	3 cut(s)	37, 337, 339
GluI	GCNGC	2 cut(s)	31, 34
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	159
HhaI	GCGC	3 cut(s)	38, 338, 340
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	3 cut(s)	36, 336, 338
HinP1I	GCGC	3 cut(s)	36, 336, 338
HinfI	GANTC	2 cut(s)	251, 347
HphI	GGTGA	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	25, 428, 497
Hpy188III	TCNNGA	3 cut(s)	77, 111, 139
HpyAV	CCTTC	2 cut(s)	323, 423
HpyCH4III	ACNGT	2 cut(s)	166, 223
HpyCH4V	TGCA	3 cut(s)	33, 239, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 337
HpyF3I	CTNAG	2 cut(s)	174, 393
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	3 cut(s)	36, 336, 338
Kzo9I	GATC	3 cut(s)	91, 151, 274
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	17, 45
LweI	GCATC	2 cut(s)	116, 432
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	3 cut(s)	93, 153, 276
MboI	GATC	3 cut(s)	91, 151, 274
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	5 cut(s)	142, 202, 214, 241, 376
MlyI	GAGTC	2 cut(s)	260, 341
MnlI	CCTC	5 cut(s)	78, 120, 170, 372, 424
MseI	TTAA	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	236, 337
NdeII	GATC	3 cut(s)	91, 151, 274
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	387
NspI	RCATGY	1 cut(s)	326
PalAI	GGCGCGCC	1 cut(s)	336
PauI	GCGCGC	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	32, 35
PleI	GAGTC	2 cut(s)	259, 341
PpsI	GAGTC	2 cut(s)	259, 341
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	35
PstNI	CAGNNNCTG	2 cut(s)	332, 447
PsuI	RGATCY	1 cut(s)	91
PteI	GCGCGC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	31, 34
Sau3AI	GATC	3 cut(s)	91, 151, 274
SchI	GAGTC	2 cut(s)	260, 341
ScrFI	CCNGG	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	116, 432
SfcI	CTRYAG	1 cut(s)	31
SgsI	GGCGCGCC	1 cut(s)	336
Sse9I	AATT	5 cut(s)	142, 202, 214, 241, 376
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	166, 223
TasI	AATT	5 cut(s)	142, 202, 214, 241, 376
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	3 cut(s)	102, 226, 237
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	2 cut(s)	30, 33
Tsp45I	GTSAC	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	124, 369
TspRI	CASTG	3 cut(s)	102, 226, 237
XagI	CCTNNNNNAGG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.