FvH4_1g24850

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002432
Physical Location & Seq
Reverse (-)
16636685 .. 16638040
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24850.t1

Sequence Viewer

Length: 1356 bp
ATGACGAAGAAAGCAGATGCAATGCCTGGTAGTCATGAACTCTGGACAGATGGCCTTATCTGTGCTTTCGAGTTCAAACCAAGCAGTTTGAGATTTGGTCATAGGAACAAGCCCCTAAGTGTTGCTCATGATGATGGTGAAAGAGAGGGTGGTCATTGGGTGCCAATTGGGTGGGCTAGAATTTTAGAAATCGTCCCAACTGTGCAAGCTGATGAAGACTACTCGACTGTTGCAGACTTAGCAGCTCGGCCTGTTTGGTGGTGCCATGTCTCAGCAGAACACCCCTCAGTTAAAGCTCGGCTCGATGATGACCGGTGGCTACATCGTGATGTCAGTTTATCTTTAAAAGATGAAACTCAACTGATCAGTGACAGAATGAAACCTCTTTTATATGAGGTTCCAATTAGGGTTCATGGGGGTTTGTTATTTGAGCTCTTGGGACAGTCAGTTGGTAATGAGGGCCAGAATGATATACCCATTGTGCTTCGTTCTTGGCAAGACCAAAACTTCCTTGTAACTGTTTTGCATATCAAAGGGCATGTGTCAAGTGCAAATGTGTCTGGCATCACAGAAGTTCTCGAACTTCTTTCCCATGGAGGCCATAACGTACCGACAACAATACATGAAGTCATTGCACATCTAACTAGCCGCCTTGCTCGATGGGATTACAGGCTATTCCGCAAGTCCATATTTGGTGCAGTAGATGAGCTTGGATTGAAATTTATGTACATGAGAAACCATAAAGAGATGAATCTTTTCAGCAAAATTCTCAACGAAGAAATCAAAACCTTATCAAACCAGGTCATCAGAGTAAAATGGTCACTTCATGCAAGGGAGGAGATTTTGTCTGAGCTTCTTGACCATTTAAGAGGAAATATCACAAGAAGCTTATTGAAGAAAACAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAGAAGTTCGTGGCCGTTTATTTTTAATTCAGGATGTGATGCAGAGCAATGTTGATGCATCGATTCACCGGAGACTTGGTGTTTATGGTGGCTGTGGCCTTGTACTTTCCATCATCACCGGGCTGCTTGGAATCAATGTTGATGGAGTGCCTGGAGCAAAAAACGCACCATATGCCTTTGGAATTTTTTCAGCCATTCTCTTGATTATTGGATGCGTGATAAGCGGACTTGGCAACTATTACCTTAGGTTGAAAAAGCCTATTTCTAAAGAGCAAGTTCAAGCTAGAAAACGGGAGCTTGAAGATCATGTCAAGAGGTTTCAGTACGAGGTAGAGACTCATGCCCCGGTTGGTAAAACCGTGCATCGGAATTATTTACCCTCAACAATGGGAGATGCATTCACTGTCCGCATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

452

Amino Acids

51.07

Weight (kDa)

7.81

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 259 - 383 5.9e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 160, 261
AciI CCGC 4 cut(s) 649, 679, 1161, 1345
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 4 cut(s) 180, 719, 765, 1119
AfaI GTAC 4 cut(s) 609, 728, 1041, 1262
AfiI CCNNNNNNNGG 1 cut(s) 1302
AgeI ACCGGT 1 cut(s) 312
AgsI TTSAA 6 cut(s) 76, 718, 895, 1189, 1217, 1238
AjnI CCWGG 3 cut(s) 25, 798, 1087
AluBI AGCT 9 cut(s) 209, 245, 296, 433, 709, 853, 888, 1220, 1234
AluI AGCT 9 cut(s) 209, 245, 296, 433, 709, 853, 888, 1220, 1234
Alw21I GWGCWC 2 cut(s) 435, 914
Alw26I GTCTC 3 cut(s) 274, 1003, 1265
AoxI GGCC 6 cut(s) 52, 248, 460, 598, 949, 1033
ApeKI GCWGC 2 cut(s) 242, 1060
ApoI RAATTY 4 cut(s) 180, 719, 765, 1119
AsiGI ACCGGT 1 cut(s) 312
Asp700I GAANNNNTTC 3 cut(s) 755, 942, 1123
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 2 cut(s) 1057, 1283
AsuHPI GGTGA 3 cut(s) 149, 995, 1045
AxyI CCTNAGG 1 cut(s) 1181
BanI GGYRCC 2 cut(s) 160, 261
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 435, 914
BbvI GCAGC 2 cut(s) 254, 1047
BccI CCATC 5 cut(s) 44, 128, 654, 1055, 1073
BceAI ACGGC 1 cut(s) 936
BciT130I CCWGG 3 cut(s) 27, 800, 1089
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 2 cut(s) 1057, 1283
BcoDI GTCTC 3 cut(s) 274, 1003, 1265
BfaI CTAG 3 cut(s) 177, 645, 1221
BisI GCNGC 3 cut(s) 243, 649, 1061
BlsI GCNGC 3 cut(s) 244, 650, 1062
Bme1390I CCNGG 5 cut(s) 27, 800, 1057, 1089, 1283
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 3 cut(s) 162, 263, 399
BmrFI CCNGG 5 cut(s) 27, 800, 1057, 1089, 1283
BmsI GCATC 8 cut(s) 7, 573, 966, 982, 1004, 1139, 1309, 1321
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 1110
BpuMI CCSGG 2 cut(s) 1057, 1283
Bsa29I ATCGAT 1 cut(s) 998
BsaJI CCNNGG 2 cut(s) 592, 1281
BsaWI WCCGGW 2 cut(s) 312, 1005
BsaXI ACNNNNNCTCC 4 cut(s) 830, 860, 1000, 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 1302
Bse118I RCCGGY 1 cut(s) 312
Bse21I CCTNAGG 1 cut(s) 1181
Bse3DI GCAATG 3 cut(s) 27, 630, 991
BseBI CCWGG 3 cut(s) 27, 800, 1089
BseCI ATCGAT 1 cut(s) 998
BseDI CCNNGG 2 cut(s) 592, 1281
BseGI GGATG 2 cut(s) 976, 1154
BseLI CCNNNNNNNGG 1 cut(s) 1302
BseMI GCAATG 3 cut(s) 27, 630, 991
BseMII CTCAG 3 cut(s) 285, 300, 840
BseRI GAGGAG 2 cut(s) 851, 944
BseXI GCAGC 2 cut(s) 254, 1047
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 6 cut(s) 54, 250, 462, 600, 951, 1035
BshNI GGYRCC 2 cut(s) 160, 261
BshTI ACCGGT 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 998
BsiHKAI GWGCWC 2 cut(s) 435, 914
BsiSI CCGG 4 cut(s) 313, 1006, 1056, 1283
BslFI GGGAC 2 cut(s) 179, 453
BslI CCNNNNNNNGG 1 cut(s) 1302
BsmAI GTCTC 3 cut(s) 274, 1003, 1265
BsmFI GGGAC 2 cut(s) 179, 453
BsmI GAATGC 1 cut(s) 1334
BsnI GGCC 6 cut(s) 54, 250, 462, 600, 951, 1035
Bsp1286I GDGCHC 2 cut(s) 435, 914
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 2 cut(s) 363, 1240
Bsp19I CCATGG 1 cut(s) 592
BspACI CCGC 4 cut(s) 649, 679, 1161, 1345
BspANI GGCC 6 cut(s) 54, 250, 462, 600, 951, 1035
BspCNI CTCAG 3 cut(s) 284, 299, 841
BspDI ATCGAT 1 cut(s) 998
BspHI TCATGA 2 cut(s) 34, 127
BspLI GGNNCC 3 cut(s) 162, 263, 399
BspT107I GGYRCC 2 cut(s) 160, 261
BsrDI GCAATG 3 cut(s) 27, 630, 991
BsrFI RCCGGY 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 726
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 592, 1281
BssMI GATC 2 cut(s) 363, 1240
BssT1I CCWWGG 1 cut(s) 592
Bst2UI CCWGG 3 cut(s) 27, 800, 1089
Bst4CI ACNGT 6 cut(s) 202, 229, 444, 520, 1297, 1342
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstAUI TGTACA 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 6 cut(s) 116, 238, 271, 286, 849, 1181
BstDSI CCRYGG 1 cut(s) 592
BstF5I GGATG 2 cut(s) 976, 1154
BstKTI GATC 2 cut(s) 366, 1243
BstMAI GTCTC 3 cut(s) 274, 1003, 1265
BstMBI GATC 2 cut(s) 363, 1240
BstMWI GCNNNNNNNGC 5 cut(s) 239, 1100, 1109, 1158, 1167
BstNI CCWGG 3 cut(s) 27, 800, 1089
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 5 cut(s) 25, 798, 1055, 1087, 1281
BstV1I GCAGC 2 cut(s) 254, 1047
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 998
Bsu36I CCTNAGG 1 cut(s) 1181
BsuRI GGCC 6 cut(s) 54, 250, 462, 600, 951, 1035
BsuTUI ATCGAT 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 2 cut(s) 976, 1154
BtsIMutI CAGTG 2 cut(s) 373, 1338
Cac8I GCNNGC 1 cut(s) 207
CciI TCATGA 2 cut(s) 34, 127
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 460
ClaI ATCGAT 1 cut(s) 998
CsiI ACCWGGT 1 cut(s) 798
Csp6I GTAC 4 cut(s) 608, 727, 1040, 1261
CspAI ACCGGT 1 cut(s) 312
CviQI GTAC 4 cut(s) 608, 727, 1040, 1261
DdeI CTNAG 6 cut(s) 116, 238, 271, 286, 849, 1181
DpnI GATC 2 cut(s) 365, 1242
DpnII GATC 2 cut(s) 363, 1240
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 1 cut(s) 949
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 433
Eco81I CCTNAGG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 25, 798, 1087
EcoT14I CCWWGG 1 cut(s) 592
EcoT22I ATGCAT 2 cut(s) 997, 1336
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 592
FaqI GGGAC 2 cut(s) 179, 453
FauNDI CATATG 1 cut(s) 1108
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 243, 649, 1061
FokI GGATG 2 cut(s) 983, 1161
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 3 cut(s) 243, 649, 1061
FspBI CTAG 3 cut(s) 177, 645, 1221
GluI GCNGC 3 cut(s) 243, 649, 1061
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 6 cut(s) 54, 250, 462, 600, 951, 1035
HapII CCGG 4 cut(s) 313, 1006, 1056, 1283
HindIII AAGCTT 1 cut(s) 886
HinfI GANTC 4 cut(s) 751, 1000, 1068, 1273
HpaII CCGG 4 cut(s) 313, 1006, 1056, 1283
HphI GGTGA 3 cut(s) 149, 995, 1045
Hpy188I TCNGA 3 cut(s) 809, 850, 1305
Hpy188III TCNNGA 9 cut(s) 35, 43, 128, 326, 578, 857, 968, 1138, 1249
HpyCH4III ACNGT 6 cut(s) 202, 229, 444, 520, 1297, 1342
HpyCH4IV ACGT 1 cut(s) 606
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 1100, 1109, 1158, 1167
HpyF3I CTNAG 6 cut(s) 116, 238, 271, 286, 849, 1181
HpySE526I ACGT 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 1240
LmnI GCTCC 3 cut(s) 931, 1091, 1231
Lsp1109I GCAGC 2 cut(s) 254, 1047
LweI GCATC 8 cut(s) 7, 573, 966, 982, 1004, 1139, 1309, 1321
MabI ACCWGGT 1 cut(s) 798
MaeI CTAG 3 cut(s) 177, 645, 1221
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 3 cut(s) 368, 514, 819
MalI GATC 2 cut(s) 365, 1242
MboI GATC 2 cut(s) 363, 1240
MboII GAAGA 6 cut(s) 19, 227, 788, 907, 950, 1250
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 435, 914
MluCI AATT 8 cut(s) 165, 180, 402, 719, 765, 963, 1119, 1306
MlyI GAGTC 1 cut(s) 1267
Mph1103I ATGCAT 2 cut(s) 997, 1336
MroXI GAANNNNTTC 3 cut(s) 755, 942, 1123
MseI TTAA 4 cut(s) 291, 344, 866, 962
MslI CAYNNNNRTG 2 cut(s) 132, 327
MspI CCGG 4 cut(s) 313, 1006, 1056, 1283
MspR9I CCNGG 5 cut(s) 27, 800, 1057, 1089, 1283
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 1334
MvaI CCWGG 3 cut(s) 27, 800, 1089
MwoI GCNNNNNNNGC 5 cut(s) 239, 1100, 1109, 1158, 1167
NciI CCSGG 2 cut(s) 1057, 1283
NcoI CCATGG 1 cut(s) 592
NdeI CATATG 1 cut(s) 1108
NdeII GATC 2 cut(s) 363, 1240
NlaIV GGNNCC 3 cut(s) 162, 263, 399
NmeAIII GCCGAG 2 cut(s) 226, 277
NmuCI GTSAC 2 cut(s) 368, 819
NsiI ATGCAT 2 cut(s) 997, 1336
NspI RCATGY 1 cut(s) 542
PagI TCATGA 2 cut(s) 34, 127
PctI GAATGC 1 cut(s) 1334
PdmI GAANNNNTTC 3 cut(s) 755, 942, 1123
PfeI GAWTC 3 cut(s) 751, 1000, 1068
PinAI ACCGGT 1 cut(s) 312
PkrI GCNGC 3 cut(s) 244, 650, 1062
PleI GAGTC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 1267
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 25, 798, 1087
PspGI CCWGG 3 cut(s) 25, 798, 1087
PspN4I GGNNCC 3 cut(s) 162, 263, 399
PspPI GGNCC 1 cut(s) 460
RsaI GTAC 4 cut(s) 609, 728, 1041, 1262
RsaNI GTAC 4 cut(s) 608, 727, 1040, 1261
RseI CAYNNNNRTG 2 cut(s) 132, 327
SacI GAGCTC 1 cut(s) 435
SaqAI TTAA 4 cut(s) 291, 344, 866, 962
SatI GCNGC 3 cut(s) 243, 649, 1061
Sau3AI GATC 2 cut(s) 363, 1240
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 1 cut(s) 1267
ScrFI CCNGG 5 cut(s) 27, 800, 1057, 1089, 1283
SduI GDGCHC 2 cut(s) 435, 914
SexAI ACCWGGT 1 cut(s) 798
SfaNI GCATC 8 cut(s) 7, 573, 966, 982, 1004, 1139, 1309, 1321
SmiMI CAYNNNNRTG 2 cut(s) 132, 327
Sse9I AATT 8 cut(s) 165, 180, 402, 719, 765, 963, 1119, 1306
SsiI CCGC 4 cut(s) 649, 679, 1161, 1345
SspMI CTAG 3 cut(s) 177, 645, 1221
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 5 cut(s) 25, 798, 1055, 1087, 1281
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 6 cut(s) 202, 229, 444, 520, 1297, 1342
TaiI ACGT 1 cut(s) 609
TaqI TCGA 6 cut(s) 69, 224, 303, 579, 658, 998
TasI AATT 8 cut(s) 165, 180, 402, 719, 765, 963, 1119, 1306
TatI WGTACW 2 cut(s) 726, 1039
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 3 cut(s) 751, 1000, 1068
Tru1I TTAA 4 cut(s) 291, 344, 866, 962
Tru9I TTAA 4 cut(s) 291, 344, 866, 962
TscAI CASTG 2 cut(s) 373, 1345
TseFI GTSAC 2 cut(s) 368, 819
TseI GCWGC 2 cut(s) 242, 1060
Tsp45I GTSAC 2 cut(s) 368, 819
TspDTI ATGAA 8 cut(s) 51, 228, 366, 392, 401, 639, 764, 815
TspRI CASTG 2 cut(s) 373, 1345
XapI RAATTY 4 cut(s) 180, 719, 765, 1119
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 3 cut(s) 755, 942, 1123
XspI CTAG 3 cut(s) 177, 645, 1221
Zsp2I ATGCAT 2 cut(s) 997, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.