Rh2DG321200

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002432
Physical Location & Seq
Reverse (-)
40140957 .. 40147615
6659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG321200.1

Sequence Viewer

Length: 1497 bp
ATGGAAAACAGCAGCAAGTATTGTTCCGACGGCTCTTGTTCCGGGAGCAATATGACGAAGAAATCAGATAGTCATAAGAATTGTTTGAGTAAATATGTCATGCCTGGAAGTGAACTTTGGACAGAGGGCCTTATCTGTGCTTTTGAGTTCATTCAAGGACGAAACAAACCAAGCAGTTTGAAATCTGGTGATAGGAACAAGTCCCGAAGTGGTGCTCATGATGAAAGAGTGGGTGGTCTTTGGGTGCCAATTGGGTGGGCTAGAATTTCAGAAATCGTCCAAACTGTGCAAGCTGATGCACAACAGTTTGCCATTGATGATGAAGATGACTACTTCACTGTTGCAGACTTAGCAGCTCGCCCTGTTTGGTGGTGCCATGTCCTTGCAGGTCACCCCTCAGTTGATGCTTGGCTCCGTAATGCCCACTGGCTACATCCTGCTGTCAGTTTAGCTTTAACAGATGAAAATCTACTGATTAGTGACAGGATGAAACACCTTTTGTATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAGCTCTTGGGGCACACATTTGGTGTTCCATTTGTCGACGAGAATGATATTCCCATTGTACTTCGTTCCTGGCAAGCCCAAAACTTCCTTGTAACTGTTTTGCATATCAAAGGGCCTATATCAAGTATAAATGTGTTGGGCATCAAAGAAGTTGAGGAACTTCTTTCCGCTGGAGGCTATAATGTACCTAGAACAGTGCATGAAGTCATAGCACATCTTACTAGCCGCCTTGCTCGCTGGGATGATAGGCTATTCCGCAAGTCCATATTTGGTGCCGTAGATGAGTTTGAATTGAAGTTTATGAACATGAGAAACCATGAAGAGATAAATCTTTTTAGCATAATTCTCAACCAAGAAATCAGAGAGTTATCAAAACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAGGAGATTCTGTTTGAGCTTCTTGAACATTTGAGAGGAAATACAACAAGAAGTTTGTTGGAGAAAATAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAAAAGTTAGTGGCCGCTTATTTACAGTTCAAGATGTGATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTTAGAGTGACACATAATCTTGGTGTTTTTGGTGGCTGTGGCCTTGTAATTTCCATCATCACTGGACTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAAAAATGCACCATATGCCTTCGCTGTATTTTCAGCCATTCTCTTCTTTATTGGATTCGTGCTTATTCGACTCGGCAACCTTTCCCTTGGGTTGAAAAAGCCTATTTCCGAAAAGCAAGTTGAAGCTAGAAAGTCGGAGCTTCAAGAGTTGGTTCAGAAGTTTCAGCACGAGGCAGAGACTCATGCCCTGGTTCGTAAAAATGTGGCTAGGAATAATTTACCCCCAGGAATGAGGGAAGAAGAACAAAAACTATATACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

498

Amino Acids

56.36

Weight (kDa)

6.82

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 298 - 432 4.1e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 3 cut(s) 244, 372, 812
AccI GTMKAC 1 cut(s) 576
AciI CCGC 4 cut(s) 708, 766, 796, 1069
AcoI YGGCCR 1 cut(s) 1066
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 2 cut(s) 600, 726
AgsI TTSAA 9 cut(s) 155, 181, 830, 835, 977, 1085, 1327, 1355, 1376
AjnI CCWGG 5 cut(s) 103, 608, 1225, 1419, 1456
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 7 cut(s) 293, 356, 452, 544, 970, 1358, 1372
AluI AGCT 7 cut(s) 293, 356, 452, 544, 970, 1358, 1372
Alw21I GWGCWC 4 cut(s) 217, 546, 1031, 1103
Alw26I GTCTC 1 cut(s) 1403
AoxI GGCC 4 cut(s) 127, 653, 1066, 1171
ApeKI GCWGC 2 cut(s) 12, 353
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 127, 508, 653
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 200, 383
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 1 cut(s) 555
BanI GGYRCC 3 cut(s) 244, 372, 812
BanII GRGCYC 1 cut(s) 546
BauI CACGAG 1 cut(s) 1400
Bbv12I GWGCWC 4 cut(s) 217, 546, 1031, 1103
BbvI GCAGC 2 cut(s) 24, 365
BccI CCATC 2 cut(s) 1193, 1211
BceAI ACGGC 2 cut(s) 46, 800
BciT130I CCWGG 5 cut(s) 105, 610, 1227, 1421, 1458
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 1403
BfaI CTAG 5 cut(s) 261, 729, 762, 1359, 1440
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 4 cut(s) 13, 354, 766, 1069
BlsI GCNGC 4 cut(s) 14, 355, 767, 1070
Bme1390I CCNGG 6 cut(s) 43, 105, 610, 1227, 1421, 1458
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 127, 508, 653
BmiI GGNNCC 5 cut(s) 246, 374, 413, 510, 814
BmrFI CCNGG 6 cut(s) 43, 105, 610, 1227, 1421, 1458
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 4 cut(s) 286, 394, 690, 1083
BmuI ACTGGG 1 cut(s) 506
BpmI CTGGAG 2 cut(s) 732, 1248
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 1318, 1419, 1456
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bse1I ACTGG 3 cut(s) 431, 512, 1198
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 5 cut(s) 105, 610, 1227, 1421, 1458
BseDI CCNNGG 3 cut(s) 1318, 1419, 1456
BseGI GGATG 3 cut(s) 433, 492, 787
BseJI GATNNNNATC 1 cut(s) 465
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 431, 512, 1198
BseRI GAGGAG 2 cut(s) 968, 1061
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 24, 365
BseYI CCCAGC 1 cut(s) 777
BshFI GGCC 4 cut(s) 129, 655, 1068, 1173
BshNI GGYRCC 3 cut(s) 244, 372, 812
BsiHKAI GWGCWC 4 cut(s) 217, 546, 1031, 1103
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 187, 494
BsmAI GTCTC 1 cut(s) 1403
BsmFI GGGAC 2 cut(s) 187, 494
BsmI GAATGC 1 cut(s) 1227
BsnI GGCC 4 cut(s) 129, 655, 1068, 1173
Bsp1286I GDGCHC 5 cut(s) 217, 546, 555, 1031, 1103
BspACI CCGC 4 cut(s) 708, 766, 796, 1069
BspANI GGCC 4 cut(s) 129, 655, 1068, 1173
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 5 cut(s) 246, 374, 413, 510, 814
BspMI ACCTGC 1 cut(s) 377
BspT107I GGYRCC 3 cut(s) 244, 372, 812
BsrI ACTGG 3 cut(s) 431, 512, 1198
BssECI CCNNGG 3 cut(s) 1318, 1419, 1456
BssSI CACGAG 1 cut(s) 1400
BssT1I CCWWGG 1 cut(s) 1318
Bst2BI CACGAG 1 cut(s) 1400
Bst2UI CCWGG 5 cut(s) 105, 610, 1227, 1421, 1458
Bst4CI ACNGT 7 cut(s) 286, 306, 340, 637, 736, 1081, 1105
Bst6I CTCTTC 2 cut(s) 855, 1280
BstAPI GCANNNNNTGC 2 cut(s) 1238, 1247
BstC8I GCNNGC 4 cut(s) 291, 358, 615, 775
BstDEI CTNAG 3 cut(s) 349, 397, 1133
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 3 cut(s) 433, 492, 787
BstMAI GTCTC 1 cut(s) 1403
BstMWI GCNNNNNNNGC 5 cut(s) 350, 550, 774, 1238, 1247
BstNI CCWGG 5 cut(s) 105, 610, 1227, 1421, 1458
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 6 cut(s) 41, 103, 608, 1225, 1419, 1456
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 24, 365
BstXI CCANNNNNNTGG 1 cut(s) 255
BsuRI GGCC 4 cut(s) 129, 655, 1068, 1173
BtsCI GGATG 3 cut(s) 433, 492, 787
BtsIMutI CAGTG 5 cut(s) 336, 424, 741, 1101, 1191
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 291, 358, 615, 775
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 127, 508, 653
Csp6I GTAC 2 cut(s) 599, 725
CviAII CATG 9 cut(s) 100, 218, 377, 740, 847, 857, 944, 1113, 1415
CviQI GTAC 2 cut(s) 599, 725
DdeI CTNAG 3 cut(s) 349, 397, 1133
EaeI YGGCCR 1 cut(s) 1066
Eam1104I CTCTTC 2 cut(s) 855, 1280
EarI CTCTTC 2 cut(s) 855, 1280
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 1318
Eco24I GRGCYC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 544
Eco91I GGTNACC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 3 cut(s) 127, 508, 653
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 5 cut(s) 103, 608, 1225, 1419, 1456
EcoT14I CCWWGG 1 cut(s) 1318
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 1318
FaeI CATG 9 cut(s) 103, 221, 380, 743, 850, 860, 947, 1116, 1418
FaqI GGGAC 2 cut(s) 187, 494
FatI CATG 9 cut(s) 99, 217, 376, 739, 846, 856, 943, 1112, 1414
FauNDI CATATG 1 cut(s) 1246
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 4 cut(s) 13, 354, 766, 1069
FokI GGATG 3 cut(s) 420, 499, 794
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 4 cut(s) 13, 354, 766, 1069
FspBI CTAG 5 cut(s) 261, 729, 762, 1359, 1440
GluI GCNGC 4 cut(s) 13, 354, 766, 1069
GsaI CCCAGC 1 cut(s) 781
GsuI CTGGAG 2 cut(s) 732, 1248
HaeIII GGCC 4 cut(s) 129, 655, 1068, 1173
HapII CCGG 1 cut(s) 42
Hin1II CATG 9 cut(s) 103, 221, 380, 743, 850, 860, 947, 1116, 1418
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 5 cut(s) 958, 1206, 1287, 1302, 1411
HpaII CCGG 1 cut(s) 42
HphI GGTGA 2 cut(s) 200, 383
Hpy166II GTNNAC 2 cut(s) 113, 577
Hpy188I TCNGA 8 cut(s) 28, 67, 271, 902, 926, 1342, 1369, 1389
Hpy188III TCNNGA 5 cut(s) 204, 218, 974, 1085, 1376
Hpy8I GTNNAC 2 cut(s) 113, 577
Hpy99I CGWCG 2 cut(s) 32, 581
HpyAV CCTTC 1 cut(s) 1261
HpyCH4III ACNGT 7 cut(s) 286, 306, 340, 637, 736, 1081, 1105
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 550, 774, 1238, 1247
HpyF3I CTNAG 3 cut(s) 349, 397, 1133
Hsp92II CATG 9 cut(s) 103, 221, 380, 743, 850, 860, 947, 1116, 1418
LmnI GCTCC 5 cut(s) 45, 417, 1048, 1229, 1369
Lsp1109I GCAGC 2 cut(s) 24, 365
LweI GCATC 4 cut(s) 286, 394, 690, 1083
MaeI CTAG 5 cut(s) 261, 729, 762, 1359, 1440
MaeIII GTNAC 5 cut(s) 389, 479, 631, 936, 1138
MboII GAAGA 6 cut(s) 70, 335, 872, 1267, 1481, 1484
MfeI CAATTG 1 cut(s) 249
MhlI GDGCHC 5 cut(s) 217, 546, 555, 1031, 1103
MluCI AATT 7 cut(s) 79, 249, 264, 830, 882, 1179, 1447
MlyI GAGTC 2 cut(s) 1296, 1405
MmeI TCCRAC 3 cut(s) 51, 990, 1347
MseI TTAA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 6 cut(s) 43, 105, 610, 1227, 1421, 1458
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 1227
MvaI CCWGG 5 cut(s) 105, 610, 1227, 1421, 1458
MwoI GCNNNNNNNGC 5 cut(s) 350, 550, 774, 1238, 1247
NciI CCSGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 1246
NlaIII CATG 9 cut(s) 103, 221, 380, 743, 850, 860, 947, 1116, 1418
NlaIV GGNNCC 5 cut(s) 246, 374, 413, 510, 814
NmeAIII GCCGAG 1 cut(s) 1284
NmuCI GTSAC 4 cut(s) 389, 479, 936, 1138
PagI TCATGA 1 cut(s) 217
PctI GAATGC 1 cut(s) 1227
PfeI GAWTC 3 cut(s) 958, 1206, 1287
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 14, 355, 767, 1070
PleI GAGTC 2 cut(s) 1296, 1405
PpsI GAGTC 2 cut(s) 1296, 1405
PpuMI RGGWCCY 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 5 cut(s) 103, 608, 1225, 1419, 1456
PspEI GGTNACC 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 5 cut(s) 103, 608, 1225, 1419, 1456
PspN4I GGNNCC 5 cut(s) 246, 374, 413, 510, 814
PspPI GGNCC 3 cut(s) 127, 508, 653
PspPPI RGGWCCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 600, 726
RsaNI GTAC 2 cut(s) 599, 725
SacI GAGCTC 1 cut(s) 546
SalI GTCGAC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 4 cut(s) 13, 354, 766, 1069
Sau96I GGNCC 3 cut(s) 127, 508, 653
SchI GAGTC 2 cut(s) 1296, 1405
ScrFI CCNGG 6 cut(s) 43, 105, 610, 1227, 1421, 1458
SduI GDGCHC 5 cut(s) 217, 546, 555, 1031, 1103
SfaNI GCATC 4 cut(s) 286, 394, 690, 1083
SinI GGWCC 1 cut(s) 508
Sse9I AATT 7 cut(s) 79, 249, 264, 830, 882, 1179, 1447
SsiI CCGC 4 cut(s) 708, 766, 796, 1069
SspMI CTAG 5 cut(s) 261, 729, 762, 1359, 1440
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 6 cut(s) 41, 103, 608, 1225, 1419, 1456
StyI CCWWGG 1 cut(s) 1318
TaaI ACNGT 7 cut(s) 286, 306, 340, 637, 736, 1081, 1105
TaqI TCGA 2 cut(s) 576, 1300
TasI AATT 7 cut(s) 79, 249, 264, 830, 882, 1179, 1447
TatI WGTACW 1 cut(s) 598
TauI GCSGC 2 cut(s) 768, 1071
TfiI GAWTC 3 cut(s) 958, 1206, 1287
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 5 cut(s) 343, 431, 741, 1108, 1198
TseFI GTSAC 4 cut(s) 389, 479, 936, 1138
TseI GCWGC 2 cut(s) 12, 353
Tsp45I GTSAC 4 cut(s) 389, 479, 936, 1138
TspDTI ATGAA 9 cut(s) 139, 237, 336, 477, 503, 756, 857, 873, 932
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 5 cut(s) 343, 431, 741, 1108, 1198
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 576
XspI CTAG 5 cut(s) 261, 729, 762, 1359, 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.