Rorug05G0006300

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002432
Physical Location & Seq
Forward (+)
385811 .. 387039
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0006300.1

Sequence Viewer

Length: 294 bp
ATGGCATCTGGGATCATCATGAGTTCAGGAGGAGTACTGAGAAGTGTGAATGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCTGTTTCGTTTTTATGCTTCCTTTGCTCTTCGTAGTGGAGGACTTGTCTCACATGGGAGGAACTCAGGGTACTGAAGCAGCTGGGGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGGTAATGTAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

97

Amino Acids

10.34

Weight (kDa)

9.69

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 2 cut(s) 36, 160
AfiI CCNNNNNNNGG 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 200
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 77, 170, 262
AluI AGCT 3 cut(s) 77, 170, 262
Alw26I GTCTC 2 cut(s) 141, 187
AlwI GGATC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 141, 187
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 168, 231
BlsI GCNGC 2 cut(s) 169, 232
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 29, 167
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 179
BseYI CCCAGC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 141, 187
Bsp143I GATC 2 cut(s) 12, 62
BspACI CCGC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 30, 166
BspHI TCATGA 1 cut(s) 18
BspPI GGATC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 122
BssMI GATC 2 cut(s) 12, 62
Bst2UI CCWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 38, 153
BstKTI GATC 2 cut(s) 15, 65
BstMAI GTCTC 2 cut(s) 141, 187
BstMBI GATC 2 cut(s) 12, 62
BstMWI GCNNNNNNNGC 2 cut(s) 83, 112
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 250
Csp6I GTAC 2 cut(s) 35, 159
CviAII CATG 2 cut(s) 19, 142
CviJI RGCY 4 cut(s) 77, 86, 170, 262
CviKI_1 RGCY 4 cut(s) 77, 86, 170, 262
CviQI GTAC 2 cut(s) 35, 159
DdeI CTNAG 2 cut(s) 38, 153
DpnI GATC 2 cut(s) 14, 64
DpnII GATC 2 cut(s) 12, 62
DriI GACNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 122
Eam1105I GACNNNNNGTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 22, 145
FaiI YATR 4 cut(s) 20, 74, 104, 143
FatI CATG 2 cut(s) 18, 141
Fnu4HI GCNGC 2 cut(s) 168, 231
Fsp4HI GCNGC 2 cut(s) 168, 231
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 168, 231
GsaI CCCAGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 22, 145
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 19, 27
HpyCH4V TGCA 2 cut(s) 72, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 112
HpyF3I CTNAG 2 cut(s) 38, 153
Hsp92II CATG 2 cut(s) 22, 145
Kzo9I GATC 2 cut(s) 12, 62
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 12, 140, 156, 237, 261, 264
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 14
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 1 cut(s) 197
MalI GATC 2 cut(s) 14, 64
MboI GATC 2 cut(s) 12, 62
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 23, 121, 140, 255
MseI TTAA 2 cut(s) 189, 292
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 83, 112
NdeII GATC 2 cut(s) 12, 62
NlaIII CATG 2 cut(s) 22, 145
PagI TCATGA 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 252
PkrI GCNGC 2 cut(s) 169, 232
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 250
PspPI GGNCC 1 cut(s) 242
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
PsyI GACNNNGTC 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 36, 160
RsaNI GTAC 2 cut(s) 35, 159
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 189, 292
SatI GCNGC 2 cut(s) 168, 231
Sau3AI GATC 2 cut(s) 12, 62
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 252
SetI ASST 5 cut(s) 79, 172, 247, 253, 264
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 196
Sse9I AATT 1 cut(s) 289
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 250
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 189, 292
Tru9I TTAA 2 cut(s) 189, 292
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 167
TspRI CASTG 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.