Rw2G023670

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002432
Physical Location & Seq
Reverse (-)
34688346 .. 34689837
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023670.1

Sequence Viewer

Length: 1458 bp
ATGGAAGACAGCAACAAGTATTGTTCCAGCGGCTCTTGTTCTGGCAGCAATATGACGAAGAAATCAGATAGTCATAAGAATTGTTTGAGTAAATATGTCATGCCTGGAAGTGAACTTTGGACAGAGGGCCTTATCTGTGCTTTTGAGTTCATTAATATTCGAGGACGAAATAAACCAAGCATGGTGCTCATGATGGAGAAAGAGTGTAGTCATTGGGTGCCAATTGGATGGGCTAGAATTTCAGAAATCGTCCGAACTGTGCAAGCTGATGCACAACAGTTTGGCATTGATGATGAAGATGACTACTTCACTGTTGCAGACTTAGCAGCTCGGCCTGTTTGGTGGTGCCATGTCCTTGCAGGTCACCCCTCAGTTGATGCTTGGCTTCGTAATGCCCACTGGCTACATCCTGCTGTCAGTTTAGCTTTAACAGATGAAAATCTACTGATTAGTGACAGGATGAAACACCTTTTGTATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAGCTCTTGGGGCACTCATTTGGTGTTCCATTTGTCGACGAGAATGATATTCCCATTGTACTTCGTTCCTGGCAAGCCCAAAACTTCCTTGTAACTGTTTTGCATATCAAAGGGCCTATATCAAGTATAAATGTGTTGGGCATCAAAGAAGTTGAGGAACTTCTTTCCGCTGGAGGCTATAATGTACCTAGAACAGTGCATGAAGTCATAGCACATCTTACTAGCCGCCTTGCTCGATGGGATGATAGGCTATTCCGCAAGTCCATATTTGGTGCCGTAGATGAGTTTGAATTGAAGTTTATGAACATGAGAAACCAAGAAGAGATAAATCTTTTTAGCATAATTCTCAACCAAGAAATCAGAGAGTTATCAAAACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAGGAGATTCTGTTTGAGCTTCTTGAACATTTGAGAGGAAATACAACAAGAAGTTTGTTGGAGAAAATAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAAAAGTTAGTGGCCGCTTATTTACAGTTCAAGATGTGATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTTAGAGTGACACATAATCTTGGTGTTTTTGGTGGCTGTGGCCTTGTAATTTCCATCATCACTGGACTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAAAAATGCACCATATGCGTTCGCTGTATTTTCAGCCATTCTCTTCTTTATTGGATTCGTGCTTATTCGACTCGGCAACCTTTACCTTGGGTTGAAAAAGCCTATTTCCGAAAAGCAAGTTGAAGCTAGAAAGTCGGAGCTTCAAGAGTTGGTTCAGAAGTTTCAGCACGAGGCAGAGACTCATGCCCTGGTTCGTAAAAATGTGGCTAGGAATAATTTACCCCCAACAATGGGAGATGCATATCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

485

Amino Acids

55.06

Weight (kDa)

6.64

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 289 - 423 2.8e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 3 cut(s) 217, 345, 785
AccI GTMKAC 1 cut(s) 549
AciI CCGC 5 cut(s) 30, 681, 739, 769, 1042
AcoI YGGCCR 1 cut(s) 1039
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 2 cut(s) 573, 699
AfiI CCNNNNNNNGG 2 cut(s) 1435, 1436
AgsI TTSAA 7 cut(s) 803, 808, 950, 1058, 1300, 1328, 1349
AjnI CCWGG 4 cut(s) 103, 581, 1198, 1392
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 7 cut(s) 266, 329, 425, 517, 943, 1331, 1345
AluI AGCT 7 cut(s) 266, 329, 425, 517, 943, 1331, 1345
Alw21I GWGCWC 4 cut(s) 189, 519, 1004, 1076
Alw26I GTCTC 1 cut(s) 1376
AoxI GGCC 5 cut(s) 127, 332, 626, 1039, 1144
ApeKI GCWGC 2 cut(s) 45, 326
ApoI RAATTY 1 cut(s) 237
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 127, 481, 626
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 528
BanI GGYRCC 3 cut(s) 217, 345, 785
BanII GRGCYC 1 cut(s) 519
BauI CACGAG 1 cut(s) 1373
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 4 cut(s) 189, 519, 1004, 1076
BbvI GCAGC 2 cut(s) 57, 338
BccI CCATC 5 cut(s) 187, 222, 744, 1166, 1184
BceAI ACGGC 1 cut(s) 773
BciT130I CCWGG 4 cut(s) 105, 583, 1200, 1394
BcoDI GTCTC 1 cut(s) 1376
BfaI CTAG 5 cut(s) 234, 702, 735, 1332, 1413
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 31, 46, 327, 739, 1042
BlsI GCNGC 5 cut(s) 32, 47, 328, 740, 1043
Bme1390I CCNGG 4 cut(s) 105, 583, 1200, 1394
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 3 cut(s) 127, 481, 626
BmiI GGNNCC 4 cut(s) 219, 347, 483, 787
BmrFI CCNGG 4 cut(s) 105, 583, 1200, 1394
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 5 cut(s) 259, 367, 663, 1056, 1432
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 705, 1221
BsaBI GATNNNNATC 2 cut(s) 438, 1446
BsaJI CCNNGG 2 cut(s) 1291, 1392
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 920, 950
Bsc4I CCNNNNNNNGG 2 cut(s) 1435, 1436
Bse1I ACTGG 3 cut(s) 404, 485, 1171
Bse8I GATNNNNATC 2 cut(s) 438, 1446
BseBI CCWGG 4 cut(s) 105, 583, 1200, 1394
BseDI CCNNGG 2 cut(s) 1291, 1392
BseGI GGATG 4 cut(s) 233, 406, 465, 760
BseJI GATNNNNATC 2 cut(s) 438, 1446
BseLI CCNNNNNNNGG 2 cut(s) 1435, 1436
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 3 cut(s) 404, 485, 1171
BseRI GAGGAG 2 cut(s) 941, 1034
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 57, 338
BshFI GGCC 5 cut(s) 129, 334, 628, 1041, 1146
BshNI GGYRCC 3 cut(s) 217, 345, 785
BsiHKAI GWGCWC 4 cut(s) 189, 519, 1004, 1076
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 1435, 1436
BsmAI GTCTC 1 cut(s) 1376
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 1200
BsnI GGCC 5 cut(s) 129, 334, 628, 1041, 1146
Bsp1286I GDGCHC 5 cut(s) 189, 519, 528, 1004, 1076
BspACI CCGC 5 cut(s) 30, 681, 739, 769, 1042
BspANI GGCC 5 cut(s) 129, 334, 628, 1041, 1146
BspCNI CTCAG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 219, 347, 483, 787
BspMI ACCTGC 1 cut(s) 350
BspT107I GGYRCC 3 cut(s) 217, 345, 785
BsrI ACTGG 3 cut(s) 404, 485, 1171
BssECI CCNNGG 2 cut(s) 1291, 1392
BssSI CACGAG 1 cut(s) 1373
BssT1I CCWWGG 1 cut(s) 1291
Bst2BI CACGAG 1 cut(s) 1373
Bst2UI CCWGG 4 cut(s) 105, 583, 1200, 1394
Bst4CI ACNGT 7 cut(s) 259, 279, 313, 610, 709, 1054, 1078
Bst6I CTCTTC 2 cut(s) 828, 1253
BstAPI GCANNNNNTGC 2 cut(s) 1211, 1220
BstC8I GCNNGC 2 cut(s) 264, 588
BstDEI CTNAG 3 cut(s) 322, 370, 1106
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 4 cut(s) 233, 406, 465, 760
BstMAI GTCTC 1 cut(s) 1376
BstMWI GCNNNNNNNGC 4 cut(s) 323, 523, 1211, 1220
BstNI CCWGG 4 cut(s) 105, 583, 1200, 1394
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 103, 581, 1198, 1392
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 57, 338
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 228
BsuRI GGCC 5 cut(s) 129, 334, 628, 1041, 1146
BtsCI GGATG 4 cut(s) 233, 406, 465, 760
BtsIMutI CAGTG 5 cut(s) 309, 397, 714, 1074, 1164
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 264, 588
CciI TCATGA 1 cut(s) 189
Cfr13I GGNCC 3 cut(s) 127, 481, 626
Csp6I GTAC 2 cut(s) 572, 698
CviAII CATG 9 cut(s) 100, 181, 190, 350, 713, 820, 917, 1086, 1388
CviQI GTAC 2 cut(s) 572, 698
DdeI CTNAG 3 cut(s) 322, 370, 1106
EaeI YGGCCR 1 cut(s) 1039
Eam1104I CTCTTC 2 cut(s) 828, 1253
EarI CTCTTC 2 cut(s) 828, 1253
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 1291
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 517
EcoO109I RGGNCCY 3 cut(s) 127, 481, 626
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 103, 581, 1198, 1392
EcoT14I CCWWGG 1 cut(s) 1291
EcoT22I ATGCAT 1 cut(s) 1447
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 1291
FaeI CATG 9 cut(s) 103, 184, 193, 353, 716, 823, 920, 1089, 1391
FaqI GGGAC 1 cut(s) 467
FatI CATG 9 cut(s) 99, 180, 189, 349, 712, 819, 916, 1085, 1387
FauNDI CATATG 1 cut(s) 1219
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 5 cut(s) 31, 46, 327, 739, 1042
FokI GGATG 4 cut(s) 240, 393, 472, 767
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 5 cut(s) 31, 46, 327, 739, 1042
FspBI CTAG 5 cut(s) 234, 702, 735, 1332, 1413
GluI GCNGC 5 cut(s) 31, 46, 327, 739, 1042
GsuI CTGGAG 2 cut(s) 705, 1221
HaeIII GGCC 5 cut(s) 129, 334, 628, 1041, 1146
Hin1II CATG 9 cut(s) 103, 184, 193, 353, 716, 823, 920, 1089, 1391
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 5 cut(s) 931, 1179, 1260, 1275, 1384
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 113, 550
Hpy188I TCNGA 8 cut(s) 67, 244, 254, 875, 899, 1315, 1342, 1362
Hpy188III TCNNGA 4 cut(s) 190, 947, 1058, 1349
Hpy8I GTNNAC 2 cut(s) 113, 550
Hpy99I CGWCG 1 cut(s) 554
HpyCH4III ACNGT 7 cut(s) 259, 279, 313, 610, 709, 1054, 1078
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 523, 1211, 1220
HpyF3I CTNAG 3 cut(s) 322, 370, 1106
Hsp92II CATG 9 cut(s) 103, 184, 193, 353, 716, 823, 920, 1089, 1391
LmnI GCTCC 3 cut(s) 1021, 1202, 1342
Lsp1109I GCAGC 2 cut(s) 57, 338
LweI GCATC 5 cut(s) 259, 367, 663, 1056, 1432
MaeI CTAG 5 cut(s) 234, 702, 735, 1332, 1413
MaeIII GTNAC 5 cut(s) 362, 452, 604, 909, 1111
MboII GAAGA 5 cut(s) 17, 70, 308, 845, 1240
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 5 cut(s) 189, 519, 528, 1004, 1076
MluCI AATT 7 cut(s) 79, 222, 237, 803, 855, 1152, 1420
MlyI GAGTC 2 cut(s) 1269, 1378
MmeI TCCRAC 2 cut(s) 963, 1320
Mph1103I ATGCAT 1 cut(s) 1447
MseI TTAA 2 cut(s) 153, 428
MspA1I CMGCKG 2 cut(s) 30, 683
MspR9I CCNGG 4 cut(s) 105, 583, 1200, 1394
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 1200
MvaI CCWGG 4 cut(s) 105, 583, 1200, 1394
MwoI GCNNNNNNNGC 4 cut(s) 323, 523, 1211, 1220
NdeI CATATG 1 cut(s) 1219
NlaIII CATG 9 cut(s) 103, 184, 193, 353, 716, 823, 920, 1089, 1391
NlaIV GGNNCC 4 cut(s) 219, 347, 483, 787
NmeAIII GCCGAG 2 cut(s) 310, 1257
NmuCI GTSAC 4 cut(s) 362, 452, 909, 1111
NsiI ATGCAT 1 cut(s) 1447
PagI TCATGA 1 cut(s) 189
PctI GAATGC 1 cut(s) 1200
PfeI GAWTC 3 cut(s) 931, 1179, 1260
PkrI GCNGC 5 cut(s) 32, 47, 328, 740, 1043
PleI GAGTC 2 cut(s) 1269, 1378
PpsI GAGTC 2 cut(s) 1269, 1378
PpuMI RGGWCCY 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 4 cut(s) 103, 581, 1198, 1392
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 4 cut(s) 103, 581, 1198, 1392
PspN4I GGNNCC 4 cut(s) 219, 347, 483, 787
PspPI GGNCC 3 cut(s) 127, 481, 626
PspPPI RGGWCCY 1 cut(s) 481
RsaI GTAC 2 cut(s) 573, 699
RsaNI GTAC 2 cut(s) 572, 698
SacI GAGCTC 1 cut(s) 519
SalI GTCGAC 1 cut(s) 548
SaqAI TTAA 2 cut(s) 153, 428
SatI GCNGC 5 cut(s) 31, 46, 327, 739, 1042
Sau96I GGNCC 3 cut(s) 127, 481, 626
SchI GAGTC 2 cut(s) 1269, 1378
ScrFI CCNGG 4 cut(s) 105, 583, 1200, 1394
SduI GDGCHC 5 cut(s) 189, 519, 528, 1004, 1076
SfaNI GCATC 5 cut(s) 259, 367, 663, 1056, 1432
SinI GGWCC 1 cut(s) 481
Sse9I AATT 7 cut(s) 79, 222, 237, 803, 855, 1152, 1420
SsiI CCGC 5 cut(s) 30, 681, 739, 769, 1042
SspI AATATT 1 cut(s) 157
SspMI CTAG 5 cut(s) 234, 702, 735, 1332, 1413
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 4 cut(s) 103, 581, 1198, 1392
StyI CCWWGG 1 cut(s) 1291
TaaI ACNGT 7 cut(s) 259, 279, 313, 610, 709, 1054, 1078
TaqI TCGA 4 cut(s) 160, 549, 748, 1273
TasI AATT 7 cut(s) 79, 222, 237, 803, 855, 1152, 1420
TatI WGTACW 1 cut(s) 571
TauI GCSGC 3 cut(s) 33, 741, 1044
TfiI GAWTC 3 cut(s) 931, 1179, 1260
Tru1I TTAA 2 cut(s) 153, 428
Tru9I TTAA 2 cut(s) 153, 428
TscAI CASTG 5 cut(s) 316, 404, 714, 1081, 1171
TseFI GTSAC 4 cut(s) 362, 452, 909, 1111
TseI GCWGC 2 cut(s) 45, 326
Tsp45I GTSAC 4 cut(s) 362, 452, 909, 1111
TspDTI ATGAA 7 cut(s) 139, 309, 450, 476, 729, 830, 905
TspRI CASTG 5 cut(s) 316, 404, 714, 1081, 1171
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 5 cut(s) 234, 702, 735, 1332, 1413
Zsp2I ATGCAT 1 cut(s) 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.