Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002432

Physical Location & Seq

Genomic Coordinates Reverse (-)

3614136 .. 3618642

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06290.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGAAGACAGCAACAAGAGTAAAACAGGTGACAGCATTTCTTGTGCCGGTAGCAATAAGCCGAAGAAACCAGATGTCCATAAGAACGGTTATAGTAAAGATGTCATGCCTGGGAGTGAACTTTGGACTGAGGGGCTTATCTGTGCTTTTGAGTTCATTCGGGGTCGAAAGAAATCAATTGGTTTGAAATCTGGCTCAACAATCCCAAGCAGACAACATACAGATGGTGGTGACCATGAGAAGCTGCGGGTTCCTTCTAAAGGAGTTCAAGAGTCTTCTTTCCCAATACATGACAGGAACAAGTCCATAAGTGGTGATTACAAATACAGCCCGACTCATGATGGTGAAAGAGTAACTGATCACTGGGTGCCAATTGGGTGGGTTAGAATTTCAGAAATCGTCCAAAATGTGCAAGCTGATGCCGGTTGGGATCCTCAACAGTTTGGGATTGATGATGAAGATTTCACTGTTGCAGACTTAGCAGCTCCATATTGGGAGCGTCCAGTAGGGCCTGTCTGGTGGTGCCATGTCTCTGCAAGTCATCCTGCGGTTGAAGATTGGCTCCGTAATGCCCAGTGGCTACATCCCGCTGTCAGTTTAGCTTTAAGAGATGAAAGTCGACTGATTAGTGATAAAATGAAACACCTATTATATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAACTCTTGGGACAGTCAGTTGGTAATCCATTTGTTGATGAGGATGATATACCCGTTGTACTTCGTTCCTGGCAAGCACAAAACTTCCTTGTAACTGCTTTGCATGTGAAAGGGCGTGTATCAAATATAAATGTGTTGGGCATCACAGAAGTTCAGGAACTTCTTTCCACTGGAGGCTATAATGTACCAAAAACAGTGCATGAAGTCATAGCACATCTAACTAGCCGCCTTACTCGATGGGATGATAGGCTGTTCCGCAAATCCATATTTGGTGCCGCAGATGAGATTGAATTGAAGTTTATGAACAGGAGAAACCATGAAGATTTGAATCTATTCAGCATAATTCTCAACCAAGAAATCAGAAAGTTATCGAGACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAGGAGATTTTGTTTGAGCTTCTTGAACATTTGAGAGGAAATATTACAAGAACCTTATTAGAGAAAATAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAGCAGTTCGTGGCCGCTTATTTACAATTCAGGATGTGATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTAAGAGTGACACATAATCTTGCTGTTTTTGGTGGTTGTGGCCTTGTGCTTTCCATCATCACCGGGCTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAACAATACACCATATGCATTTGGCCTATTTACAGGCATACTCTTTTTTATTGGAATCGTGCTAATTCTACTTGGGTTGCTTTACCTTGGGTTGAAAGAGCCTATTGCCGAAGAGCAAGTCGAAGTTAGAAAATTAGAGCTTCAAGAGTTGGTTCAGATGTTTCAACACGAGGCAGAAACTCATGCCCTGGTTCGTAAAAATGTGTCTCGGAATAATTTACCGCCAACATTGGGAGATGCATTCAGAGGTAACGCAAATTATATCCTCATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

553

Amino Acids

62.41

Weight (kDa)

6.36

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29820 AT1G29820 AT1G29830 AT1G29830 AT1G29830
fragaria_vesca	FvH4_1g24850 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290
malus_domestica	MD05G1290900.v1.1 MD10G1266700.v1.1 MD16G1203400.v1.1
prunus_persica	Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1
pyrus_communis	pycom05g26740
rosa_chinensis	RchiOBHm_Chr5g0013021
rosa_laevigata	RLG00000018679
rosa_multiflora	Rmu_sc0003892.1_g000020 Rmu_sc0037731.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063550 Rroxscaffold_2G00121600 Rroxscaffold_2G00121610
rosa_rugosa	Rorug02G0238900 Rorug05G0006200 Rorug05G0006300 Rorug05G0088100
rosa_samantha	Rh2AG297500 Rh2DG321200 Rh5AG100800 Rh5BG097200 Rh5CG109400 Rh5DG096100
rosa_wichuraiana	Rw2G023670 Rw5G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	367, 522, 962
AccI	GTMKAC	1 cut(s)	619
AciI	CCGC	8 cut(s)	247, 548, 588, 916, 946, 966, 1219, 1604
AclWI	GGATC	2 cut(s)	425, 438
AcoI	YGGCCR	1 cut(s)	1216
AcsI	RAATTY	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	2 cut(s)	750, 876
AfiI	CCNNNNNNNGG	2 cut(s)	260, 1613
AjnI	CCWGG	4 cut(s)	109, 758, 1375, 1569
AluBI	AGCT	6 cut(s)	244, 416, 485, 602, 1120, 1522
AluI	AGCT	6 cut(s)	244, 416, 485, 602, 1120, 1522
Alw21I	GWGCWC	2 cut(s)	1181, 1253
Alw26I	GTCTC	3 cut(s)	535, 1057, 1593
AlwI	GGATC	2 cut(s)	425, 438
AoxI	GGCC	4 cut(s)	509, 1216, 1321, 1405
ApeKI	GCWGC	2 cut(s)	244, 482
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	1485, 1517
Asp700I	GAANNNNTTC	2 cut(s)	1022, 1209
AspS9I	GGNCC	2 cut(s)	509, 658
AsuC2I	CCSGG	1 cut(s)	1345
AsuHPI	GGTGA	5 cut(s)	41, 242, 326, 356, 1333
AvaII	GGWCC	1 cut(s)	658
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	3 cut(s)	367, 522, 962
BauI	CACGAG	1 cut(s)	1550
BbsI	GAAGAC	2 cut(s)	12, 267
Bbv12I	GWGCWC	2 cut(s)	1181, 1253
BbvI	GCAGC	2 cut(s)	231, 494
BccI	CCATC	5 cut(s)	218, 335, 921, 1343, 1361
BciT130I	CCWGG	4 cut(s)	111, 760, 1377, 1571
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	1345
BcoDI	GTCTC	3 cut(s)	535, 1057, 1593
BfaI	CTAG	1 cut(s)	912
BisI	GCNGC	5 cut(s)	245, 483, 916, 966, 1219
BlsI	GCNGC	5 cut(s)	246, 484, 917, 967, 1220
Bme1390I	CCNGG	5 cut(s)	111, 760, 1345, 1377, 1571
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	509, 658
BmiI	GGNNCC	7 cut(s)	252, 369, 432, 524, 563, 660, 964
BmrFI	CCNGG	5 cut(s)	111, 760, 1345, 1377, 1571
BmrI	ACTGGG	3 cut(s)	373, 568, 656
BmsI	GCATC	4 cut(s)	409, 840, 1233, 1609
BmuI	ACTGGG	3 cut(s)	373, 568, 656
BpiI	GAAGAC	2 cut(s)	12, 267
BpmI	CTGGAG	2 cut(s)	882, 1398
BpuMI	CCSGG	1 cut(s)	1345
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaJI	CCNNGG	3 cut(s)	110, 1468, 1569
BsaXI	ACNNNNNCTCC	2 cut(s)	1097, 1127
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 1613
Bse118I	RCCGGY	2 cut(s)	47, 422
Bse1I	ACTGG	5 cut(s)	368, 503, 574, 662, 865
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	4 cut(s)	111, 760, 1377, 1571
BseDI	CCNNGG	3 cut(s)	110, 1468, 1569
BseGI	GGATG	5 cut(s)	541, 583, 739, 937, 1243
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	2 cut(s)	260, 1613
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	5 cut(s)	368, 503, 574, 662, 865
BseRI	GAGGAG	2 cut(s)	1118, 1211
BseXI	GCAGC	2 cut(s)	231, 494
BshFI	GGCC	4 cut(s)	511, 1218, 1323, 1407
BshNI	GGYRCC	3 cut(s)	367, 522, 962
BsiHKAI	GWGCWC	2 cut(s)	1181, 1253
BsiSI	CCGG	3 cut(s)	48, 423, 1344
BslFI	GGGAC	2 cut(s)	644, 714
BslI	CCNNNNNNNGG	2 cut(s)	260, 1613
BsmAI	GTCTC	3 cut(s)	535, 1057, 1593
BsmFI	GGGAC	2 cut(s)	644, 714
BsmI	GAATGC	2 cut(s)	1377, 1622
BsnI	GGCC	4 cut(s)	511, 1218, 1323, 1407
Bsp1286I	GDGCHC	2 cut(s)	1181, 1253
Bsp143I	GATC	2 cut(s)	358, 430
BspACI	CCGC	8 cut(s)	247, 548, 588, 916, 946, 966, 1219, 1604
BspANI	GGCC	4 cut(s)	511, 1218, 1323, 1407
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	7 cut(s)	252, 369, 432, 524, 563, 660, 964
BspPI	GGATC	2 cut(s)	425, 438
BspQI	GCTCTTC	1 cut(s)	1488
BspT107I	GGYRCC	3 cut(s)	367, 522, 962
BsrFI	RCCGGY	2 cut(s)	47, 422
BsrI	ACTGG	5 cut(s)	368, 503, 574, 662, 865
BssAI	RCCGGY	2 cut(s)	47, 422
BssECI	CCNNGG	3 cut(s)	110, 1468, 1569
BssMI	GATC	2 cut(s)	358, 430
BssSI	CACGAG	1 cut(s)	1550
BssT1I	CCWWGG	1 cut(s)	1468
Bst2BI	CACGAG	1 cut(s)	1550
Bst2UI	CCWGG	4 cut(s)	111, 760, 1377, 1571
Bst4CI	ACNGT	6 cut(s)	89, 441, 469, 705, 886, 1255
Bst6I	CTCTTC	1 cut(s)	1488
BstC8I	GCNNGC	2 cut(s)	414, 765
BstDEI	CTNAG	3 cut(s)	129, 478, 1283
BstEII	GGTNACC	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	5 cut(s)	541, 583, 739, 937, 1243
BstKTI	GATC	2 cut(s)	361, 433
BstMAI	GTCTC	3 cut(s)	535, 1057, 1593
BstMBI	GATC	2 cut(s)	358, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	4 cut(s)	111, 760, 1377, 1571
BstNSI	RCATGY	1 cut(s)	797
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	5 cut(s)	109, 758, 1343, 1375, 1569
BstV1I	GCAGC	2 cut(s)	231, 494
BstV2I	GAAGAC	2 cut(s)	12, 267
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	511, 1218, 1323, 1407
BtsCI	GGATG	5 cut(s)	541, 583, 739, 937, 1243
BtsIMutI	CAGTG	6 cut(s)	361, 465, 581, 858, 891, 1251
Cac8I	GCNNGC	2 cut(s)	414, 765
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	2 cut(s)	47, 422
Cfr13I	GGNCC	2 cut(s)	509, 658
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	749, 875
CviQI	GTAC	2 cut(s)	749, 875
DdeI	CTNAG	3 cut(s)	129, 478, 1283
DpnI	GATC	2 cut(s)	360, 432
DpnII	GATC	2 cut(s)	358, 430
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	1216
Eam1104I	CTCTTC	1 cut(s)	1488
EarI	CTCTTC	1 cut(s)	1488
Eco130I	CCWWGG	1 cut(s)	1468
Eco47I	GGWCC	1 cut(s)	658
Eco91I	GGTNACC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	2 cut(s)	509, 658
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	4 cut(s)	109, 758, 1375, 1569
EcoT14I	CCWWGG	1 cut(s)	1468
EcoT22I	ATGCAT	2 cut(s)	1402, 1624
ErhI	CCWWGG	1 cut(s)	1468
FaqI	GGGAC	2 cut(s)	644, 714
FauI	CCCGC	2 cut(s)	240, 595
FauNDI	CATATG	1 cut(s)	1396
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	5 cut(s)	245, 483, 916, 966, 1219
FokI	GGATG	5 cut(s)	528, 570, 746, 944, 1250
Fsp4HI	GCNGC	5 cut(s)	245, 483, 916, 966, 1219
FspBI	CTAG	1 cut(s)	912
GluI	GCNGC	5 cut(s)	245, 483, 916, 966, 1219
GsuI	CTGGAG	2 cut(s)	882, 1398
HaeIII	GGCC	4 cut(s)	511, 1218, 1323, 1407
HapII	CCGG	3 cut(s)	48, 423, 1344
HgaI	GACGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HinfI	GANTC	5 cut(s)	272, 334, 1018, 1356, 1437
HpaII	CCGG	3 cut(s)	48, 423, 1344
HphI	GGTGA	5 cut(s)	41, 242, 326, 356, 1333
Hpy166II	GTNNAC	2 cut(s)	119, 620
Hpy188I	TCNGA	6 cut(s)	394, 1052, 1076, 1539, 1593, 1628
Hpy188III	TCNNGA	7 cut(s)	269, 338, 845, 1062, 1124, 1235, 1526
Hpy8I	GTNNAC	2 cut(s)	119, 620
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	6 cut(s)	89, 441, 469, 705, 886, 1255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	3 cut(s)	129, 478, 1283
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	358, 430
LguI	GCTCTTC	1 cut(s)	1488
LmnI	GCTCC	5 cut(s)	490, 496, 567, 1198, 1379
Lsp1109I	GCAGC	2 cut(s)	231, 494
LweI	GCATC	4 cut(s)	409, 840, 1233, 1609
MaeI	CTAG	1 cut(s)	912
MaeIII	GTNAC	7 cut(s)	29, 230, 352, 781, 1086, 1288, 1631
MalI	GATC	2 cut(s)	360, 432
MboI	GATC	2 cut(s)	358, 430
MboII	GAAGA	7 cut(s)	17, 76, 267, 470, 566, 1022, 1505
MfeI	CAATTG	2 cut(s)	177, 372
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	1181, 1253
MlyI	GAGTC	2 cut(s)	281, 328
Mph1103I	ATGCAT	2 cut(s)	1402, 1624
MroXI	GAANNNNTTC	2 cut(s)	1022, 1209
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	222, 342
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	3 cut(s)	48, 423, 1344
MspR9I	CCNGG	5 cut(s)	111, 760, 1345, 1377, 1571
MunI	CAATTG	2 cut(s)	177, 372
Mva1269I	GAATGC	2 cut(s)	1377, 1622
MvaI	CCWGG	4 cut(s)	111, 760, 1377, 1571
MwoI	GCNNNNNNNGC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	1345
NdeI	CATATG	1 cut(s)	1396
NdeII	GATC	2 cut(s)	358, 430
NlaIV	GGNNCC	7 cut(s)	252, 369, 432, 524, 563, 660, 964
NmuCI	GTSAC	4 cut(s)	29, 230, 1086, 1288
NsiI	ATGCAT	2 cut(s)	1402, 1624
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	1488
PctI	GAATGC	2 cut(s)	1377, 1622
PdmI	GAANNNNTTC	2 cut(s)	1022, 1209
PfeI	GAWTC	3 cut(s)	1018, 1356, 1437
PkrI	GCNGC	5 cut(s)	246, 484, 917, 967, 1220
PleI	GAGTC	2 cut(s)	280, 328
PpsI	GAGTC	2 cut(s)	280, 328
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	4 cut(s)	109, 758, 1375, 1569
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	4 cut(s)	109, 758, 1375, 1569
PspN4I	GGNNCC	7 cut(s)	252, 369, 432, 524, 563, 660, 964
PspPI	GGNCC	2 cut(s)	509, 658
PspPPI	RGGWCCY	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	750, 876
RsaNI	GTAC	2 cut(s)	749, 875
RseI	CAYNNNNRTG	2 cut(s)	222, 342
SalI	GTCGAC	1 cut(s)	618
SapI	GCTCTTC	1 cut(s)	1488
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	5 cut(s)	245, 483, 916, 966, 1219
Sau3AI	GATC	2 cut(s)	358, 430
Sau96I	GGNCC	2 cut(s)	509, 658
SchI	GAGTC	2 cut(s)	281, 328
ScrFI	CCNGG	5 cut(s)	111, 760, 1345, 1377, 1571
SduI	GDGCHC	2 cut(s)	1181, 1253
SfaNI	GCATC	4 cut(s)	409, 840, 1233, 1609
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	2 cut(s)	222, 342
SsiI	CCGC	8 cut(s)	247, 548, 588, 916, 946, 966, 1219, 1604
SspI	AATATT	1 cut(s)	1144
SspMI	CTAG	1 cut(s)	912
StyD4I	CCNGG	5 cut(s)	109, 758, 1343, 1375, 1569
StyI	CCWWGG	1 cut(s)	1468
TaaI	ACNGT	6 cut(s)	89, 441, 469, 705, 886, 1255
TaqI	TCGA	6 cut(s)	166, 619, 925, 1061, 1503, 1653
TatI	WGTACW	1 cut(s)	748
TauI	GCSGC	3 cut(s)	918, 968, 1221
TfiI	GAWTC	3 cut(s)	1018, 1356, 1437
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	6 cut(s)	368, 472, 581, 865, 891, 1258
TseFI	GTSAC	4 cut(s)	29, 230, 1086, 1288
TseI	GCWGC	2 cut(s)	244, 482
Tsp45I	GTSAC	4 cut(s)	29, 230, 1086, 1288
TspDTI	ATGAA	8 cut(s)	145, 471, 627, 653, 906, 1007, 1023, 1082
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	6 cut(s)	368, 472, 581, 865, 891, 1258
VpaK11BI	GGWCC	1 cut(s)	658
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	619
XmnI	GAANNNNTTC	2 cut(s)	1022, 1209
XspI	CTAG	1 cut(s)	912
Zsp2I	ATGCAT	2 cut(s)	1402, 1624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.