Rroxscaffold_1G00063550

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002432
Physical Location & Seq
Reverse (-)
85399365 .. 85403945
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063550.1

Sequence Viewer

Length: 1389 bp
ATGGAAAACAGCAACAAGAGTAACACAGGTGACAACATTTCTCATCCCAGTAGCAATAAGCCGAAGAAACCAGATGGCCATAAGAATGGTTATAGTCAAGATGTCATGCCTGGAAGTGAACTTTGGACAGACGGGCTTATCTGTGCTTTTGAGTTCATTCGAGGCCGAAAGAAACCAAGTAGTTTGAAATCTGGCTCAACAATCCTAAGCAGACAACATACAGATGTTCCTTCTAAAGGATTTCAAGAGTCTTCTTCCCCAATACATGATAGGAACGAGTCCCTAAGTGGTGATTACAAATACAGCCCAGCACATGATGGTGGAAGAGTGGCTGATCATTGGGTGCCAATTGGGTGGGTTAGAATTTCAGAAATCGTCCAAACTGTGCAAGCTGATGCCGGTTGGGATTCTCAACAGTTTGGGATTGATGATGAAGATGATTTCACTGTTGCAGACTTAGCAGCTCCATATTGGGAGCGTCCAGTGGGGCCTGTTTGGTGGTGCCATGTCTCTGCAGGTCACCCCTCAGTTGATGATTGGCTCCGTAATGCCCAGTGGCTACATCCTGCTGTCAGTTTAGCTTTAAGAGATGAAAGTCGTCTGATTAGTGACAGGATGAAACACCTTTTATATGAGGAACTTCTTTCAACTGGAGGCTATAATGTACCAAGAACAGTGCATGAAGTCATAGCACATCTAATTAGCCGCCTTACTCGATGGGATGATAGGAGAAACCATGAAGATATGAATCTCTTTAGCATAATTCTCAACCAAGAAATCAGAAAGTTATCGAGACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAGGAGATTTTGTTTGAGCTTCTTGAACACTTGAGAGGAAATACTACAAGAAGCTTGTTGGAGAAAATAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAGCAGTTCGTGGCCGCTTATTTACAATTCAGGATGTGATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTAAGAGTGACACATAATCTTGCTGTTTTTGGTGGCTGTGGCCTTGTACTTTCCATCATCACTGGGCTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAACAATGCACCATATGCATTCGGCGTATTTTCAGCCATTCTCTTCTTTATTGGAATCGTGCTAATTCTACTTGGGTTGCTTTACCTTGGGTTGAAACAGCCTATTGCTGAAGAGCAAGTTGAAGTTAGAAAGATGGAGCTTCAGGAGTTGGTTCAGATGTTTCAGCACGAGGCAGAGACTCATGCCCTGGTTCGTAAAAATGTGGCGCGGAATAATTTACCCCCAACACTGGGAGATGCATTTGCACGTAACGCAAATTATATCCTCATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

462

Amino Acids

52.35

Weight (kDa)

6.23

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 225 - 393 1.4e-12 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 506
AccB1I GGYRCC 2 cut(s) 343, 501
AccII CGCG 1 cut(s) 1321
AciI CCGC 3 cut(s) 706, 949, 1321
AcoI YGGCCR 2 cut(s) 76, 946
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 2 cut(s) 1238, 1242
AfaI GTAC 2 cut(s) 666, 1059
AfiI CCNNNNNNNGG 3 cut(s) 236, 1342, 1343
AgsI TTSAA 6 cut(s) 187, 245, 648, 857, 1207, 1235
AjnI CCWGG 3 cut(s) 109, 1105, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 6 cut(s) 392, 464, 581, 850, 885, 1252
AluI AGCT 6 cut(s) 392, 464, 581, 850, 885, 1252
Alw21I GWGCWC 2 cut(s) 911, 983
Alw26I GTCTC 3 cut(s) 514, 787, 1283
AoxI GGCC 5 cut(s) 76, 163, 488, 946, 1051
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 1321
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 41, 302, 512
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 2 cut(s) 343, 501
BauI CACGAG 1 cut(s) 1280
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 911, 983
BbvI GCAGC 1 cut(s) 473
BccI CCATC 6 cut(s) 68, 311, 711, 1073, 1091, 1240
BciT130I CCWGG 3 cut(s) 111, 1107, 1301
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 514, 787, 1283
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 506
BisI GCNGC 3 cut(s) 462, 706, 949
BlsI GCNGC 3 cut(s) 463, 707, 950
Bme1390I CCNGG 3 cut(s) 111, 1107, 1301
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 4 cut(s) 345, 489, 503, 542
BmrFI CCNGG 3 cut(s) 111, 1107, 1301
BmrI ACTGGG 4 cut(s) 42, 547, 1083, 1352
BmsI GCATC 3 cut(s) 385, 963, 1339
BmuI ACTGGG 4 cut(s) 42, 547, 1083, 1352
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 2 cut(s) 672, 1128
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 883
BsaAI YACGTR 1 cut(s) 1361
BsaBI GATNNNNATC 1 cut(s) 747
BsaJI CCNNGG 2 cut(s) 1198, 1299
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 1342, 1343
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 6 cut(s) 48, 482, 553, 655, 1078, 1347
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 3 cut(s) 111, 1107, 1301
BseDI CCNNGG 2 cut(s) 1198, 1299
BseGI GGATG 5 cut(s) 43, 562, 621, 727, 973
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 236, 1342, 1343
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 6 cut(s) 48, 482, 553, 655, 1078, 1347
BseRI GAGGAG 2 cut(s) 848, 941
BseXI GCAGC 1 cut(s) 473
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 1321
BshFI GGCC 5 cut(s) 78, 165, 490, 948, 1053
BshNI GGYRCC 2 cut(s) 343, 501
BsiHKAI GWGCWC 2 cut(s) 911, 983
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 236, 1342, 1343
BsmAI GTCTC 3 cut(s) 514, 787, 1283
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 2 cut(s) 1107, 1130
BsnI GGCC 5 cut(s) 78, 165, 490, 948, 1053
Bsp1286I GDGCHC 2 cut(s) 911, 983
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 3 cut(s) 706, 949, 1321
BspANI GGCC 5 cut(s) 78, 165, 490, 948, 1053
BspCNI CTCAG 1 cut(s) 539
BspFNI CGCG 1 cut(s) 1321
BspLI GGNNCC 4 cut(s) 345, 489, 503, 542
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 1218
BspT107I GGYRCC 2 cut(s) 343, 501
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 6 cut(s) 48, 482, 553, 655, 1078, 1347
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 1198, 1299
BssMI GATC 1 cut(s) 334
BssSI CACGAG 1 cut(s) 1280
BssT1I CCWWGG 1 cut(s) 1198
Bst2BI CACGAG 1 cut(s) 1280
Bst2UI CCWGG 3 cut(s) 111, 1107, 1301
Bst4CI ACNGT 5 cut(s) 385, 417, 448, 676, 985
Bst6I CTCTTC 3 cut(s) 319, 1160, 1218
BstAPI GCANNNNNTGC 2 cut(s) 1118, 1127
BstBAI YACGTR 1 cut(s) 1361
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 206, 284, 457, 526, 1013
BstEII GGTNACC 1 cut(s) 518
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 5 cut(s) 43, 562, 621, 727, 973
BstFNI CGCG 1 cut(s) 1321
BstHHI GCGC 1 cut(s) 1321
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 3 cut(s) 514, 787, 1283
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 4 cut(s) 458, 1118, 1127, 1364
BstNI CCWGG 3 cut(s) 111, 1107, 1301
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 109, 1105, 1299
BstSFI CTRYAG 1 cut(s) 513
BstUI CGCG 1 cut(s) 1321
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 1 cut(s) 243
BstXI CCANNNNNNTGG 2 cut(s) 86, 354
BsuRI GGCC 5 cut(s) 78, 165, 490, 948, 1053
BtsCI GGATG 5 cut(s) 43, 562, 621, 727, 973
BtsIMutI CAGTG 7 cut(s) 444, 489, 560, 681, 981, 1071, 1340
BveI ACCTGC 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 1321
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 488
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 665, 1058
CviAII CATG 9 cut(s) 106, 266, 314, 506, 680, 737, 824, 993, 1295
CviQI GTAC 2 cut(s) 665, 1058
DdeI CTNAG 5 cut(s) 206, 284, 457, 526, 1013
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 76, 946
Eam1104I CTCTTC 3 cut(s) 319, 1160, 1218
EarI CTCTTC 3 cut(s) 319, 1160, 1218
Eco130I CCWWGG 1 cut(s) 1198
Eco57I CTGAAG 2 cut(s) 1238, 1242
Eco91I GGTNACC 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 109, 1105, 1299
EcoT14I CCWWGG 1 cut(s) 1198
EcoT22I ATGCAT 2 cut(s) 1132, 1354
ErhI CCWWGG 1 cut(s) 1198
FaeI CATG 9 cut(s) 109, 269, 317, 509, 683, 740, 827, 996, 1298
FaqI GGGAC 1 cut(s) 265
FatI CATG 9 cut(s) 105, 265, 313, 505, 679, 736, 823, 992, 1294
FauNDI CATATG 1 cut(s) 1126
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 462, 706, 949
FokI GGATG 5 cut(s) 30, 549, 628, 734, 980
Fsp4HI GCNGC 3 cut(s) 462, 706, 949
GlaI GCGC 1 cut(s) 1320
GluI GCNGC 3 cut(s) 462, 706, 949
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 672, 1128
HaeIII GGCC 5 cut(s) 78, 165, 490, 948, 1053
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 1321
Hin1II CATG 9 cut(s) 109, 269, 317, 509, 683, 740, 827, 996, 1298
Hin6I GCGC 1 cut(s) 1319
HinP1I GCGC 1 cut(s) 1319
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 7 cut(s) 248, 278, 407, 748, 1086, 1167, 1291
HpaII CCGG 1 cut(s) 399
HphI GGTGA 3 cut(s) 41, 302, 512
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 5 cut(s) 370, 603, 782, 806, 1269
Hpy188III TCNNGA 6 cut(s) 98, 245, 792, 854, 965, 1256
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 5 cut(s) 385, 417, 448, 676, 985
HpyCH4IV ACGT 1 cut(s) 1360
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 1118, 1127, 1364
HpyF3I CTNAG 5 cut(s) 206, 284, 457, 526, 1013
HpySE526I ACGT 1 cut(s) 1360
Hsp92II CATG 9 cut(s) 109, 269, 317, 509, 683, 740, 827, 996, 1298
HspAI GCGC 1 cut(s) 1319
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 1218
LmnI GCTCC 6 cut(s) 469, 475, 546, 928, 1109, 1249
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 3 cut(s) 385, 963, 1339
MaeII ACGT 1 cut(s) 1360
MaeIII GTNAC 7 cut(s) 20, 29, 518, 608, 816, 1018, 1361
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 8 cut(s) 76, 243, 246, 336, 446, 752, 1147, 1235
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 911, 983
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 8 cut(s) 348, 363, 699, 762, 960, 1176, 1327, 1369
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 3 cut(s) 257, 287, 1285
MmeI TCCRAC 1 cut(s) 870
MnlI CCTC 9 cut(s) 155, 535, 628, 647, 826, 860, 919, 1276, 1388
Mox20I TGGCCA 1 cut(s) 78
Mph1103I ATGCAT 2 cut(s) 1132, 1354
MroXI GAANNNNTTC 1 cut(s) 939
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 3 cut(s) 84, 222, 318
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 3 cut(s) 111, 1107, 1301
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 2 cut(s) 1107, 1130
MvaI CCWGG 3 cut(s) 111, 1107, 1301
MvnI CGCG 1 cut(s) 1321
MwoI GCNNNNNNNGC 4 cut(s) 458, 1118, 1127, 1364
NdeI CATATG 1 cut(s) 1126
NdeII GATC 1 cut(s) 334
NlaIII CATG 9 cut(s) 109, 269, 317, 509, 683, 740, 827, 996, 1298
NlaIV GGNNCC 4 cut(s) 345, 489, 503, 542
NmuCI GTSAC 5 cut(s) 29, 518, 608, 816, 1018
NsiI ATGCAT 2 cut(s) 1132, 1354
PciSI GCTCTTC 1 cut(s) 1218
PctI GAATGC 2 cut(s) 1107, 1130
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 4 cut(s) 407, 748, 1086, 1167
PkrI GCNGC 3 cut(s) 463, 707, 950
PleI GAGTC 3 cut(s) 256, 286, 1285
PpsI GAGTC 3 cut(s) 256, 286, 1285
Ppu21I YACGTR 1 cut(s) 1361
Psp6I CCWGG 3 cut(s) 109, 1105, 1299
PspEI GGTNACC 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 3 cut(s) 109, 1105, 1299
PspN4I GGNNCC 4 cut(s) 345, 489, 503, 542
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 1 cut(s) 517
RsaI GTAC 2 cut(s) 666, 1059
RsaNI GTAC 2 cut(s) 665, 1058
RseI CAYNNNNRTG 3 cut(s) 84, 222, 318
SapI GCTCTTC 1 cut(s) 1218
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 3 cut(s) 462, 706, 949
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 3 cut(s) 257, 287, 1285
ScrFI CCNGG 3 cut(s) 111, 1107, 1301
SduI GDGCHC 2 cut(s) 911, 983
SfaNI GCATC 3 cut(s) 385, 963, 1339
SfcI CTRYAG 1 cut(s) 513
SmiMI CAYNNNNRTG 3 cut(s) 84, 222, 318
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 8 cut(s) 348, 363, 699, 762, 960, 1176, 1327, 1369
SsiI CCGC 3 cut(s) 706, 949, 1321
StyD4I CCNGG 3 cut(s) 109, 1105, 1299
StyI CCWWGG 1 cut(s) 1198
TaaI ACNGT 5 cut(s) 385, 417, 448, 676, 985
TaiI ACGT 1 cut(s) 1363
TaqI TCGA 3 cut(s) 160, 715, 791
TasI AATT 8 cut(s) 348, 363, 699, 762, 960, 1176, 1327, 1369
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 2 cut(s) 708, 951
TfiI GAWTC 4 cut(s) 407, 748, 1086, 1167
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 7 cut(s) 451, 489, 560, 681, 988, 1078, 1347
TseFI GTSAC 5 cut(s) 29, 518, 608, 816, 1018
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 5 cut(s) 29, 518, 608, 816, 1018
TspDTI ATGAA 8 cut(s) 145, 447, 606, 632, 696, 753, 761, 812
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 7 cut(s) 451, 489, 560, 681, 988, 1078, 1347
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 939
Zsp2I ATGCAT 2 cut(s) 1132, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.