Rorug05G0088100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002432
Physical Location & Seq
Forward (+)
7579710 .. 7581810
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0088100.1

Sequence Viewer

Length: 1917 bp
ATGGCAATCGGTCCTTACTACAAGGTGGACGCAGACCCATCGCTAGGGTACCTAACCCAAAAAGATACGGCGGTCAAGCTACCACGACCAACTAGGGTTAAGAATAAAGCACCAGCCCCTATTCAAATCACCGCCGAGCAACTCCTCCGGGAGGCTCGTGAGCGGCAGGAGGAAGAACTCCGACCTCCCAAACAGAAAATCACAGACCCAACTGAGCTTGCCGAATACCGTCTCCAAAACCGCAAGGAGTGTCAGCGTTTGGATCAAATATGCAACGTGGGAGGAGGCTCAGGGGGACTTGAATCGCGCACGCTCGGTTTGGGAGCGTGCCCTAGAAGTCGATTACAGGAACCACACTCTGTGGATGAGCTCTTGCCTAGAGTAGACCAACTCTGGTACAAGTACATTCACATGGAAGAGGTGATCGGGAATGTGGTCGGAGCTCGAAGGATTTTCGAGTGGTGGATGAGTTGGATGCCGGACCAGCAAATGTGGCTCTCCTTCATCAAGTTTGAGCTTCGGTACAACGAGGTGGAGCGTGCTAGATCGATTTTCGAGTGGTTTGTACAGTGTCATCCGAAAGTTGGAGCTTGGATTCGGTATGCGAAGTTTGAGATGAAGAATAGTGATGCTGCGAGGGCGAGGAATGTGTATGAAAGGGCAGTAGAGAAGCTAGCTGATGATGAGGAGGCTGAGGAGTTGTTTGTGGCTTTTGCTGAGTTTGAAGAGCGGTGCAAAGAAACCGAGCGAGCAAGGTGTATCTATAAATTTGCACTGGATCACATACCCAAGGGAAGAGCCGAGGCTTTGTATAACAAGTTTGTATCTCTTGAGAAGCAATATGGGCACAGAGAAGGGATTGAGGATGCGATTGTGGGAAAGAAGAGGTTTGAGTATGAGGATGAGGTTAAGAAGAATCCTCTTAACTACGACTTGTGGTTTGATTACATAAGGCTAGAAGAGAGTGCAGGGAACAAGGAGAGAATTAGAGAGGTTTATGAGCAAGCTGTTGCTAATGTTCCACCGGCTCCTGAGAAGCGGTATTGGCAGCGATATATTTATCTGTGGATTAACTATGCACTCTATGAGGAGCTTGACACCGGAGATGTGACACGTACTCGAGAGGTCTATAAGGAGTGCCTCAAGCTGATTCCTCATGGGAAGTTCTCATTTGCGAAAATATGGATTCTTGCTGCGCAGTTTGAGATACGACAGCTGAATATGGCAGCTGCACGCAACATTCTTGGTAATGCAATAGGCAAGGCAGCTAAGGAGAAGGTTTTTAAGAAGTACATTGAGATTGAGTTGCAACTCGGAAATATTGATCGTTGTAGGAAGTTGTATGAAAAGTATCTAGAGTGGTTACCCCACAATTTCCATGCATGGATCAAGTATGCAGAGTTAGAGACATCTTTGGGGGATACAGAACGAGCAAGGGCAATTTTTGAACTCGCAATCAGCCAATTAGAACTTGACAAGCCTGAATTGTTATGGAGGGCATACATCGATTTTGAACTGTCTGAATTTGAGTTTGAGAGAACCAGACAACTTTATGAGAGACTACTAGGCCGGACAAAACATGTAAAGGTATGGAAGAGTTATGCAAAATTTGAGGCATCTGCTATGGTGGGAAATGGCGAGGATTCAGATTCAGCAAAAGCTCCTGCCGAGGGTGATCTTGTTGAAGAGAAGAAACAATCTAGCTTTGGGAAGCTGGGTGATATTAGCCTAGTTCAATCTAAGCTGCCAAAGAAACTGAAGAAGAGGAGGCCAATAGAAACTGAAGATGGTCCAGCTGGGTATGAGGAATACATTGATTACCTGTTCCCAGAAGAAAGTGAGACGACGAATCTCAAGATTTTAGAAGCTGCCTACAGGTGGAAGAAGAAGCGAAAAGTTTCTTCTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

638

Amino Acids

75.03

Weight (kDa)

6.44

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_PRP39_N PF23240 132 - 274 1.1e-10 PRP39 N-terminal HAT repeat
HAT_PRP39_C PF23241 163 - 270 4.2e-12 PRP39 C-terminal HAT repeat
HAT PF02184 177 - 205 8.4e-11 HAT (Half-A-TPR) repeat
HAT_Syf1_CNRKL1_C PF23231 212 - 287 6.6e-09 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_N PF23240 294 - 420 5.3e-07 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 297 - 419 2.1e-09 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 302 - 448 7.4e-10 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_C PF23241 310 - 417 2.9e-06 PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 418 - 508 3.1e-09 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 424 - 541 4.2e-09 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N PF23240 428 - 537 4e-12 PRP39 N-terminal HAT repeat
Suf PF05843 456 - 537 1e-05 Suppressor of forked protein (Suf)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1197
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AccBSI CCGCTC 2 cut(s) 163, 730
AccI GTMKAC 1 cut(s) 384
AccII CGCG 1 cut(s) 307
AciI CCGC 6 cut(s) 71, 132, 163, 241, 730, 1039
AclWI GGATC 3 cut(s) 270, 786, 1394
AcsI RAATTY 3 cut(s) 767, 1523, 1607
AcuI CTGAAG 2 cut(s) 1778, 1803
AdeI CACNNNGTG 1 cut(s) 361
AfaI GTAC 7 cut(s) 50, 398, 404, 524, 567, 1117, 1292
AfiI CCNNNNNNNGG 5 cut(s) 44, 151, 584, 1670, 1878
AflIII ACRYGT 2 cut(s) 1112, 1579
AgsI TTSAA 7 cut(s) 125, 302, 725, 1448, 1514, 1685, 1736
Alw21I GWGCWC 2 cut(s) 372, 445
Alw26I GTCTC 4 cut(s) 236, 1400, 1552, 1835
AlwI GGATC 3 cut(s) 270, 786, 1394
Ama87I CYCGRG 1 cut(s) 1119
AoxI GGCC 2 cut(s) 1567, 1769
ApeKI GCWGC 8 cut(s) 632, 1048, 1193, 1226, 1229, 1265, 1744, 1868
ApoI RAATTY 3 cut(s) 767, 1523, 1607
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
Asp700I GAANNNNTTC 1 cut(s) 1897
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 2 cut(s) 309, 1198
AspS9I GGNCC 3 cut(s) 11, 481, 1790
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 4 cut(s) 121, 433, 1685, 1730
AsuNHI GCTAGC 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 1119
AvaII GGWCC 3 cut(s) 11, 481, 1790
BaeGI GKGCMC 2 cut(s) 332, 849
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 372, 445
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 372, 445
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 8 cut(s) 619, 1060, 1180, 1216, 1238, 1277, 1731, 1855
BccI CCATC 2 cut(s) 46, 1781
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciVI GTATCC 1 cut(s) 1414
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 4 cut(s) 236, 1400, 1552, 1835
BfmI CTRYAG 1 cut(s) 1873
BfuI GTATCC 1 cut(s) 1414
BisI GCNGC 9 cut(s) 164, 633, 1049, 1194, 1227, 1230, 1266, 1745, 1869
BlsI GCNGC 9 cut(s) 165, 634, 1050, 1195, 1228, 1231, 1267, 1746, 1870
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 3 cut(s) 11, 481, 1790
BmeT110I CYCGRG 1 cut(s) 1119
BmgT120I GGNCC 3 cut(s) 11, 481, 1790
BmiI GGNNCC 3 cut(s) 50, 351, 1029
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 4 cut(s) 465, 619, 856, 1625
BmtI GCTAGC 1 cut(s) 677
Bpu10I CCTNAGC 3 cut(s) 289, 693, 1269
BpuEI CTTGAG 3 cut(s) 851, 1127, 1838
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 2 cut(s) 548, 1506
BsaAI YACGTR 1 cut(s) 1115
BsaJI CCNNGG 3 cut(s) 789, 801, 1668
BsaWI WCCGGW 1 cut(s) 1100
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 151, 584, 1670, 1878
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 1 cut(s) 780
BseCI ATCGAT 2 cut(s) 548, 1506
BseDI CCNNGG 3 cut(s) 789, 801, 1668
BseGI GGATG 6 cut(s) 370, 471, 480, 574, 871, 907
BseLI CCNNNNNNNGG 5 cut(s) 44, 151, 584, 1670, 1878
BseMII CTCAG 5 cut(s) 204, 303, 684, 708, 1023
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 6 cut(s) 134, 297, 701, 710, 1103, 1780
BseSI GKGCMC 2 cut(s) 332, 849
BseXI GCAGC 8 cut(s) 619, 1060, 1180, 1216, 1238, 1277, 1731, 1855
BseYI CCCAGC 2 cut(s) 1714, 1796
BsgI GTGCAG 2 cut(s) 987, 1215
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 1569, 1771
BshNI GGYRCC 1 cut(s) 48
BshVI ATCGAT 2 cut(s) 548, 1506
BsiHKAI GWGCWC 2 cut(s) 372, 445
BsiHKCI CYCGRG 1 cut(s) 1119
BsiSI CCGG 5 cut(s) 148, 479, 1025, 1101, 1570
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 5 cut(s) 44, 151, 584, 1670, 1878
BsmAI GTCTC 4 cut(s) 236, 1400, 1552, 1835
BsmBI CGTCTC 2 cut(s) 236, 1835
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 2 cut(s) 1569, 1771
BsoBI CYCGRG 1 cut(s) 1119
Bsp1286I GDGCHC 4 cut(s) 332, 372, 445, 849
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
BspACI CCGC 6 cut(s) 71, 132, 163, 241, 730, 1039
BspANI GGCC 2 cut(s) 1569, 1771
BspCNI CTCAG 5 cut(s) 205, 302, 685, 709, 1024
BspDI ATCGAT 2 cut(s) 548, 1506
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 50, 351, 1029
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 3 cut(s) 270, 786, 1394
BspQI GCTCTTC 2 cut(s) 720, 790
BspT107I GGYRCC 1 cut(s) 48
BsrBI CCGCTC 2 cut(s) 163, 730
BsrFI RCCGGY 1 cut(s) 1024
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 3 cut(s) 789, 801, 1668
BssMI GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 230, 570, 1518
Bst6I CTCTTC 8 cut(s) 411, 720, 790, 878, 954, 1589, 1680, 1757
BstAUI TGTACA 1 cut(s) 565
BstBAI YACGTR 1 cut(s) 1115
BstC8I GCNNGC 8 cut(s) 219, 311, 328, 540, 675, 750, 1005, 1234
BstDEI CTNAG 7 cut(s) 213, 289, 693, 717, 1032, 1269, 1740
BstEII GGTNACC 1 cut(s) 1362
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 6 cut(s) 370, 471, 480, 574, 871, 907
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 2 cut(s) 309, 1198
BstKTI GATC 7 cut(s) 265, 426, 548, 781, 1327, 1389, 1678
BstMAI GTCTC 4 cut(s) 236, 1400, 1552, 1835
BstMBI GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
BstMWI GCNNNNNNNGC 5 cut(s) 484, 493, 638, 844, 1045
BstNSI RCATGY 1 cut(s) 1583
BstPI GGTNACC 1 cut(s) 1362
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 1873
BstSLI GKGCMC 2 cut(s) 332, 849
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 8 cut(s) 619, 1060, 1180, 1216, 1238, 1277, 1731, 1855
Bsu15I ATCGAT 2 cut(s) 548, 1506
BsuI GTATCC 1 cut(s) 1414
BsuRI GGCC 2 cut(s) 1569, 1771
BsuTUI ATCGAT 2 cut(s) 548, 1506
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 6 cut(s) 370, 471, 480, 574, 871, 907
BtsIMutI CAGTG 2 cut(s) 575, 773
Cac8I GCNNGC 8 cut(s) 219, 311, 328, 540, 675, 750, 1005, 1234
CfoI GCGC 2 cut(s) 309, 1198
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 3 cut(s) 11, 481, 1790
ClaI ATCGAT 2 cut(s) 548, 1506
CseI GACGC 1 cut(s) 38
Csp6I GTAC 7 cut(s) 49, 397, 403, 523, 566, 1116, 1291
CviAII CATG 5 cut(s) 412, 1157, 1379, 1383, 1580
CviQI GTAC 7 cut(s) 49, 397, 403, 523, 566, 1116, 1291
DdeI CTNAG 7 cut(s) 213, 289, 693, 717, 1032, 1269, 1740
DpnI GATC 7 cut(s) 264, 425, 547, 780, 1326, 1388, 1677
DpnII GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
DraIII CACNNNGTG 1 cut(s) 361
Eam1104I CTCTTC 8 cut(s) 411, 720, 790, 878, 954, 1589, 1680, 1757
EarI CTCTTC 8 cut(s) 411, 720, 790, 878, 954, 1589, 1680, 1757
Ecl136II GAGCTC 2 cut(s) 370, 443
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 2 cut(s) 372, 445
Eco47I GGWCC 3 cut(s) 11, 481, 1790
Eco53kI GAGCTC 2 cut(s) 370, 443
Eco57I CTGAAG 2 cut(s) 1778, 1803
Eco88I CYCGRG 1 cut(s) 1119
Eco91I GGTNACC 1 cut(s) 1362
EcoICRI GAGCTC 2 cut(s) 370, 443
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 1362
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 1384
EcoT38I GRGCYC 2 cut(s) 372, 445
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 2 cut(s) 236, 1835
FaeI CATG 5 cut(s) 415, 1160, 1382, 1386, 1583
FaqI GGGAC 1 cut(s) 309
FatI CATG 5 cut(s) 411, 1156, 1378, 1382, 1579
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 9 cut(s) 164, 633, 1049, 1194, 1227, 1230, 1266, 1745, 1869
FokI GGATG 6 cut(s) 377, 478, 487, 561, 878, 914
FriOI GRGCYC 2 cut(s) 372, 445
Fsp4HI GCNGC 9 cut(s) 164, 633, 1049, 1194, 1227, 1230, 1266, 1745, 1869
FspI TGCGCA 1 cut(s) 1197
GlaI GCGC 2 cut(s) 308, 1197
GluI GCNGC 9 cut(s) 164, 633, 1049, 1194, 1227, 1230, 1266, 1745, 1869
GsaI CCCAGC 2 cut(s) 1718, 1800
HaeIII GGCC 2 cut(s) 1569, 1771
HapII CCGG 5 cut(s) 148, 479, 1025, 1101, 1570
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 309, 1198
Hin1II CATG 5 cut(s) 415, 1160, 1382, 1386, 1583
Hin6I GCGC 2 cut(s) 307, 1196
HinP1I GCGC 2 cut(s) 307, 1196
HinfI GANTC 8 cut(s) 302, 595, 916, 1150, 1186, 1643, 1649, 1849
HpaII CCGG 5 cut(s) 148, 479, 1025, 1101, 1570
HphI GGTGA 4 cut(s) 121, 433, 1685, 1730
Hpy166II GTNNAC 2 cut(s) 28, 385
Hpy188I TCNGA 7 cut(s) 182, 440, 579, 1316, 1522, 1648, 1906
Hpy188III TCNNGA 7 cut(s) 158, 427, 830, 1031, 1121, 1355, 1855
Hpy8I GTNNAC 2 cut(s) 28, 385
Hpy99I CGWCG 1 cut(s) 1849
HpyAV CCTTC 4 cut(s) 441, 511, 848, 1270
HpyCH4III ACNGT 3 cut(s) 230, 570, 1518
HpyCH4IV ACGT 2 cut(s) 276, 1114
HpyF10VI GCNNNNNNNGC 5 cut(s) 484, 493, 638, 844, 1045
HpyF3I CTNAG 7 cut(s) 213, 289, 693, 717, 1032, 1269, 1740
HpySE526I ACGT 2 cut(s) 276, 1114
Hsp92II CATG 5 cut(s) 415, 1160, 1382, 1386, 1583
HspAI GCGC 2 cut(s) 307, 1196
KpnI GGTACC 1 cut(s) 52
Kzo9I GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
LguI GCTCTTC 2 cut(s) 720, 790
LmnI GCTCC 7 cut(s) 323, 440, 535, 587, 1033, 1090, 1666
Lsp1109I GCAGC 8 cut(s) 619, 1060, 1180, 1216, 1238, 1277, 1731, 1855
LweI GCATC 4 cut(s) 465, 619, 856, 1625
MaeII ACGT 2 cut(s) 276, 1114
MaeIII GTNAC 2 cut(s) 1108, 1362
MalI GATC 7 cut(s) 264, 425, 547, 780, 1326, 1388, 1677
MbiI CCGCTC 2 cut(s) 163, 730
MboI GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
MhlI GDGCHC 4 cut(s) 332, 372, 445, 849
MluCI AATT 8 cut(s) 767, 984, 1372, 1440, 1463, 1484, 1523, 1607
MmeI TCCRAC 4 cut(s) 205, 418, 452, 565
Mph1103I ATGCAT 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 1897
MseI TTAA 6 cut(s) 99, 909, 924, 1071, 1284, 1915
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 3 cut(s) 1216, 1229, 1796
MspI CCGG 5 cut(s) 148, 479, 1025, 1101, 1570
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 5 cut(s) 484, 493, 638, 844, 1045
NciI CCSGG 1 cut(s) 149
NdeII GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 5 cut(s) 415, 1160, 1382, 1386, 1583
NlaIV GGNNCC 3 cut(s) 50, 351, 1029
NmeAIII GCCGAG 3 cut(s) 160, 826, 1693
NmuCI GTSAC 1 cut(s) 1108
NsbI TGCGCA 1 cut(s) 1197
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 1 cut(s) 1583
PaeR7I CTCGAG 1 cut(s) 1119
PciI ACATGT 1 cut(s) 1579
PciSI GCTCTTC 2 cut(s) 720, 790
PdmI GAANNNNTTC 1 cut(s) 1897
PfeI GAWTC 8 cut(s) 302, 595, 916, 1150, 1186, 1643, 1649, 1849
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 9 cut(s) 165, 634, 1050, 1195, 1228, 1231, 1267, 1746, 1870
Ppu21I YACGTR 1 cut(s) 1115
PscI ACATGT 1 cut(s) 1579
Psp124BI GAGCTC 2 cut(s) 372, 445
PspEI GGTNACC 1 cut(s) 1362
PspFI CCCAGC 2 cut(s) 1714, 1796
PspN4I GGNNCC 3 cut(s) 50, 351, 1029
PspPI GGNCC 3 cut(s) 11, 481, 1790
PvuII CAGCTG 3 cut(s) 1216, 1229, 1796
RsaI GTAC 7 cut(s) 50, 398, 404, 524, 567, 1117, 1292
RsaNI GTAC 7 cut(s) 49, 397, 403, 523, 566, 1116, 1291
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 2 cut(s) 372, 445
SapI GCTCTTC 2 cut(s) 720, 790
SaqAI TTAA 6 cut(s) 99, 909, 924, 1071, 1284, 1915
SatI GCNGC 9 cut(s) 164, 633, 1049, 1194, 1227, 1230, 1266, 1745, 1869
Sau3AI GATC 7 cut(s) 262, 423, 545, 778, 1324, 1386, 1675
Sau96I GGNCC 3 cut(s) 11, 481, 1790
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 4 cut(s) 332, 372, 445, 849
SfaNI GCATC 4 cut(s) 465, 619, 856, 1625
SfcI CTRYAG 1 cut(s) 1873
Sfr274I CTCGAG 1 cut(s) 1119
SinI GGWCC 3 cut(s) 11, 481, 1790
SlaI CTCGAG 1 cut(s) 1119
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 4 cut(s) 830, 1119, 1142, 1853
SmoI CTYRAG 4 cut(s) 830, 1119, 1142, 1853
Sse9I AATT 8 cut(s) 767, 984, 1372, 1440, 1463, 1484, 1523, 1607
SsiI CCGC 6 cut(s) 71, 132, 163, 241, 730, 1039
SspI AATATT 1 cut(s) 1321
SstI GAGCTC 2 cut(s) 372, 445
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 230, 570, 1518
TaiI ACGT 2 cut(s) 279, 1117
TaqI TCGA 7 cut(s) 340, 445, 456, 548, 555, 1120, 1506
TasI AATT 8 cut(s) 767, 984, 1372, 1440, 1463, 1484, 1523, 1607
TatI WGTACW 3 cut(s) 402, 565, 1290
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 8 cut(s) 302, 595, 916, 1150, 1186, 1643, 1649, 1849
Tru1I TTAA 6 cut(s) 99, 909, 924, 1071, 1284, 1915
Tru9I TTAA 6 cut(s) 99, 909, 924, 1071, 1284, 1915
TscAI CASTG 2 cut(s) 575, 780
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 8 cut(s) 632, 1048, 1193, 1226, 1229, 1265, 1744, 1868
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 4 cut(s) 493, 632, 669, 1359
TspRI CASTG 2 cut(s) 575, 780
VpaK11BI GGWCC 3 cut(s) 11, 481, 1790
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 3 cut(s) 767, 1523, 1607
XbaI TCTAGA 1 cut(s) 1354
XceI RCATGY 1 cut(s) 1583
XhoI CTCGAG 1 cut(s) 1119
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 1897
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.