Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002432

Physical Location & Seq

Genomic Coordinates Forward (+)

54255817 .. 54289861

Gene Structure 34045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTGATGGAATGCCTGGAGCAAAAAAATGCACCATATGCCTTCGCTGTATTTTCAGCCATTCTCTTCTTTATTGGATTCGTGCTTATTCGACTCGGCAACCTTTACCTTGGGTTGAAAAATCCTATTTCCGAAAAGCAAGTTGAAGCTAGAAAGTCGGAGCTTCAAGAGTTGGTTCGAAGTTTCAGCACGAGGCGAGACTCATGCCCCGGAATGGAAACCTCTGGATTTAGCTACGACAAGGATTGTTTAGTGGAAACGGGTGATGGTTTGTTTGAGCAACCCTTGCTTCGGTGGGTTGGAGCAAAACATTCGTGTTATGCCATCCAACATCCTATACAACTCTCCAAAGAAATCATCTTCTCGAGAAGCATAGATGGGTCCAACATAGAGAGAGTATCTAAATTAGCACCTGGGGCCATCCCTCGATCCAATTTGGGCGAGGTGTGGTTTTCTCCGATGATCCCTCCCTCCCTCCCGCCATGGAAAGGGGTAATCGATGGTGCTACGGGCGCTTATACTACTGGAATTTGGAAACGAACATCACCGGTATGCAAAACCAGTTTATATGGTTCCATCTTCGCCTCTCTACCCATCAAGCTATCCGGACCCATTTTACCCCCCACCCATTACCACTCCGATTATACCTACGATTCCCAATACCCAAATCTTGGTCCCAACCATCAAGGACTGTCCGCAATTGTTATCAATGGCTACACATTTCCACCAGAATTCCTTTTTCCCAACCAAGCTACTCTAATCGGCATGGAAAGGAGAAGTTCCGCTAGCGGAGTTGCGCTTAGCGAGACTAACTCGCTTGCAAGATGGAAAGGAGAAGTTCCGCTAGCGGAGTTGAGCTTAGCGAAGACGAACTCGCTTGCTAGAAGGAAAAGGGAGAAGTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

302

Amino Acids

33.51

Weight (kDa)

9.12

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29820 AT1G29820 AT1G29830 AT1G29830 AT1G29830
fragaria_vesca	FvH4_1g24850 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290
malus_domestica	MD05G1290900.v1.1 MD10G1266700.v1.1 MD16G1203400.v1.1
prunus_persica	Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1
pyrus_communis	pycom05g26740
rosa_chinensis	RchiOBHm_Chr5g0013021
rosa_laevigata	RLG00000018679
rosa_multiflora	Rmu_sc0003892.1_g000020 Rmu_sc0037731.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063550 Rroxscaffold_2G00121600 Rroxscaffold_2G00121610
rosa_rugosa	Rorug02G0238900 Rorug05G0006200 Rorug05G0006300 Rorug05G0088100
rosa_samantha	Rh2AG297500 Rh2DG321200 Rh5AG100800 Rh5BG097200 Rh5CG109400 Rh5DG096100
rosa_wichuraiana	Rw2G023670 Rw5G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	7 cut(s)	479, 696, 783, 789, 842, 848, 904
AclWI	GGATC	2 cut(s)	423, 457
AcsI	RAATTY	2 cut(s)	528, 731
AfiI	CCNNNNNNNGG	4 cut(s)	214, 291, 488, 671
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	118, 146, 167
AjnI	CCWGG	2 cut(s)	15, 412
AluBI	AGCT	6 cut(s)	149, 163, 234, 601, 752, 858
AluI	AGCT	6 cut(s)	149, 163, 234, 601, 752, 858
Alw26I	GTCTC	2 cut(s)	192, 800
AlwI	GGATC	2 cut(s)	423, 457
Ama87I	CYCGRG	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	1 cut(s)	417
ApoI	RAATTY	2 cut(s)	528, 731
AsiGI	ACCGGT	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	515, 799
AspS9I	GGNCC	4 cut(s)	381, 417, 608, 674
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	275, 537
AsuII	TTCGAA	1 cut(s)	178
AsuNHI	GCTAGC	2 cut(s)	785, 844
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	3 cut(s)	381, 608, 674
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	872
BccI	CCATC	9 cut(s)	260, 332, 371, 428, 494, 584, 602, 690, 819
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 294, 328
BciT130I	CCWGG	2 cut(s)	17, 414
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	192, 800
BfaI	CTAG	5 cut(s)	150, 786, 845, 882, 907
BfoI	RGCGCY	1 cut(s)	516
BlpI	GCTNAGC	2 cut(s)	800, 859
Bme1390I	CCNGG	3 cut(s)	17, 210, 414
Bme18I	GGWCC	3 cut(s)	381, 608, 674
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	4 cut(s)	381, 417, 608, 674
BmiI	GGNNCC	5 cut(s)	382, 418, 574, 610, 676
BmrFI	CCNGG	3 cut(s)	17, 210, 414
BmtI	GCTAGC	2 cut(s)	789, 848
BpiI	GAAGAC	1 cut(s)	872
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	2 cut(s)	800, 859
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	109, 208, 413, 482
BsaWI	WCCGGW	2 cut(s)	547, 605
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 291, 488, 671
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	529, 561
BseAI	TCCGGA	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	17, 414
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	109, 208, 413, 482
BseGI	GGATG	3 cut(s)	324, 331, 420
BseLI	CCNNNNNNNGG	4 cut(s)	214, 291, 488, 671
BseNI	ACTGG	2 cut(s)	529, 561
BshFI	GGCC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	3 cut(s)	210, 548, 606
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	4 cut(s)	214, 291, 488, 671
BsmAI	GTCTC	2 cut(s)	192, 800
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	428, 462
Bsp1720I	GCTNAGC	2 cut(s)	800, 859
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	7 cut(s)	479, 696, 783, 789, 842, 848, 904
BspANI	GGCC	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	605
BspLI	GGNNCC	5 cut(s)	382, 418, 574, 610, 676
BspOI	GCTAGC	2 cut(s)	789, 848
BspPI	GGATC	2 cut(s)	423, 457
BspT104I	TTCGAA	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	529, 561
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	4 cut(s)	109, 208, 413, 482
BssMI	GATC	2 cut(s)	428, 462
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	109, 482
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	17, 414
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	2 cut(s)	38, 286
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	787, 819, 846, 879
BstDEI	CTNAG	2 cut(s)	800, 859
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	324, 331, 420
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	2 cut(s)	515, 799
BstKTI	GATC	2 cut(s)	431, 465
BstMAI	GTCTC	2 cut(s)	192, 800
BstMBI	GATC	2 cut(s)	428, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 286, 416, 512
BstNI	CCWGG	2 cut(s)	17, 414
BstSCI	CCNGG	3 cut(s)	15, 208, 412
BstV2I	GAAGAC	1 cut(s)	872
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	324, 331, 420
Cac8I	GCNNGC	4 cut(s)	787, 819, 846, 879
CfoI	GCGC	2 cut(s)	515, 799
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	4 cut(s)	381, 417, 608, 674
ClaI	ATCGAT	1 cut(s)	498
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	3 cut(s)	204, 483, 766
CviJI	RGCY	9 cut(s)	59, 149, 163, 234, 419, 601, 714, 752, 858
CviKI_1	RGCY	9 cut(s)	59, 149, 163, 234, 419, 601, 714, 752, 858
DdeI	CTNAG	2 cut(s)	800, 859
DpnI	GATC	2 cut(s)	430, 464
DpnII	GATC	2 cut(s)	428, 462
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	109, 482
Eco47I	GGWCC	3 cut(s)	381, 608, 674
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	15, 412
EcoT14I	CCWWGG	2 cut(s)	109, 482
ErhI	CCWWGG	2 cut(s)	109, 482
FaeI	CATG	3 cut(s)	207, 486, 769
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	3 cut(s)	203, 482, 765
FauI	CCCGC	1 cut(s)	486
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	3 cut(s)	311, 318, 407
FspBI	CTAG	5 cut(s)	150, 786, 845, 882, 907
GlaI	GCGC	2 cut(s)	514, 798
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	3 cut(s)	210, 548, 606
HhaI	GCGC	2 cut(s)	515, 799
Hin1II	CATG	3 cut(s)	207, 486, 769
Hin6I	GCGC	2 cut(s)	513, 797
HinP1I	GCGC	2 cut(s)	513, 797
HinfI	GANTC	4 cut(s)	78, 93, 200, 653
HpaII	CCGG	3 cut(s)	210, 548, 606
HphI	GGTGA	2 cut(s)	275, 537
Hpy188I	TCNGA	4 cut(s)	133, 160, 459, 640
Hpy188III	TCNNGA	5 cut(s)	167, 225, 364, 366, 606
HpyAV	CCTTC	2 cut(s)	52, 879
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4V	TGCA	3 cut(s)	32, 555, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 286, 416, 512
HpyF3I	CTNAG	2 cut(s)	800, 859
Hsp92II	CATG	3 cut(s)	207, 486, 769
HspAI	GCGC	2 cut(s)	513, 797
Kpn2I	TCCGGA	1 cut(s)	605
Kzo9I	GATC	2 cut(s)	428, 462
LmnI	GCTCC	3 cut(s)	19, 160, 302
MaeI	CTAG	5 cut(s)	150, 786, 845, 882, 907
MalI	GATC	2 cut(s)	430, 464
MboI	GATC	2 cut(s)	428, 462
MboII	GAAGA	4 cut(s)	58, 352, 571, 877
MfeI	CAATTG	1 cut(s)	699
MluCI	AATT	5 cut(s)	404, 433, 528, 699, 731
MlyI	GAGTC	2 cut(s)	87, 194
MmeI	TCCRAC	4 cut(s)	138, 280, 352, 408
MnlI	CCTC	8 cut(s)	186, 232, 435, 436, 477, 481, 485, 595
MroI	TCCGGA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	550
MspI	CCGG	3 cut(s)	210, 548, 606
MspR9I	CCNGG	3 cut(s)	17, 210, 414
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	2 cut(s)	17, 414
MwoI	GCNNNNNNNGC	4 cut(s)	38, 286, 416, 512
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	428, 462
NheI	GCTAGC	2 cut(s)	785, 844
NlaIII	CATG	3 cut(s)	207, 486, 769
NlaIV	GGNNCC	5 cut(s)	382, 418, 574, 610, 676
NmeAIII	GCCGAG	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	364
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	78, 653
PflMI	CCANNNNNTGG	1 cut(s)	671
PinAI	ACCGGT	1 cut(s)	547
PleI	GAGTC	2 cut(s)	87, 194
PpsI	GAGTC	2 cut(s)	87, 194
Psp6I	CCWGG	2 cut(s)	15, 412
PspGI	CCWGG	2 cut(s)	15, 412
PspN4I	GGNNCC	5 cut(s)	382, 418, 574, 610, 676
PspPI	GGNCC	4 cut(s)	381, 417, 608, 674
RseI	CAYNNNNRTG	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	428, 462
Sau96I	GGNCC	4 cut(s)	381, 417, 608, 674
SchI	GAGTC	2 cut(s)	87, 194
ScrFI	CCNGG	3 cut(s)	17, 210, 414
Sfr274I	CTCGAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	3 cut(s)	381, 608, 674
SlaI	CTCGAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	5 cut(s)	404, 433, 528, 699, 731
SsiI	CCGC	7 cut(s)	479, 696, 783, 789, 842, 848, 904
SspMI	CTAG	5 cut(s)	150, 786, 845, 882, 907
StyD4I	CCNGG	3 cut(s)	15, 208, 412
StyI	CCWWGG	2 cut(s)	109, 482
TaaI	ACNGT	1 cut(s)	693
TaqI	TCGA	5 cut(s)	91, 178, 365, 427, 498
TasI	AATT	5 cut(s)	404, 433, 528, 699, 731
TfiI	GAWTC	2 cut(s)	78, 653
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	3 cut(s)	381, 608, 674
XapI	RAATTY	2 cut(s)	528, 731
XhoI	CTCGAG	1 cut(s)	364
XspI	CTAG	5 cut(s)	150, 786, 845, 882, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.