RLG00000018679

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002432
Physical Location & Seq
Reverse (-)
33830630 .. 33832111
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018679

Sequence Viewer

Length: 1482 bp
ATGGAAAACAGCAACAAGTATAGTTCCAGCGGCTCTTGTTCCGGGAGCAATATGACGAAGAAATCAGATAGTCATAAGAATTGTTTGAGTAAATATGTCATGCCTGGAAATGAACTTTGGACAGAGGGCCTTATCTGTGCTTTTGAGTTCATTAATATTCGAGGACAAAATAAACCAAGCAGTTTGAAATCTAGTGATAGGAACAAGTCCCCAAGTGGTGCTCATGATGGCGAAAGAGAGTGTCGTCATTGGGTGCCAATTGGGTGGGCTAGAAATTCAGAAATCGTCCAAACTGTGCAAGCAGATGCACAACAGTTTGGCATTGATGATGAAGATGACTACGTCACTGTTGCAGACTTAGCAGCTCGGCCTGTTTGGTGGTGCCATGTCCTTGCAGGTCACCCCTCAGTTGATGCTTGGCTCCGTAATGCCCACTGGCTACATCCTACTGTCAGTTTAGCTTTAACAGATGAAAATCTACTGATTAGTGACAGGATGAAACACCTTTTGTATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAGCTCCTGGGGCACTCATTTGGTGTTCCATTTGTCGATGAGAATGATATTCCCATTGTACTTCGTTCCTGGCAAGCCCAAAACTTCCTTGTAACTGTTTTGCATATCAAAGGGCCTATATCAAGTATAAATGTGTTGGGCATCAAAGAAGTTGAGGAACTTCTTTCCGCTGGAGGCTATAATGTACCTAGAACAGTGCATGAAGTCATAGCACATCTTACTAGCCGCCTTGCTCGATGGGAAGATAGGCTATTCCGCAAGTCCATATTTGGTGCTGTAGATGAGTTTGAATTGAAGTTTATGAACATGAGAAACCATGAAGAGATAAATCTTTTTAGCATAATTCTCAACCAAGAAATCAGAGAGTTATCAAAACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAAGAGATTCTGTTTGAGCTTCTTGAACATTTGAGAGGAAATACAACAAGAAGTTTGTTGGAGAAAATAAGAAAGAGCACAAGAGAAATGATTGAGGAGCAAGAAAAAGTTAGTGGCCGCTTATTTACAGTTCAAGATGTCATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTTAGAGTGACACATAATCTTGGTGTTTTTGGTGGCTGTGGCCTTGTAATTTCCATCATCACTGGACTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAAAAATGCACCTTATGCCTTCGCTGTATTTTCAGCCATTCTCTTCTTTATTGGATTCGTGCTTATTCGACTCGGCAACCTTTACCTTGGGTTGAAAAAGCCTATTTCCGAAAAGCAAGTTGAAGCTAGAAAGTCGGAGCTTCAAGAGTTGGTTCAGAAGTTTCAGCACGAGGCAGAGACTCATGCCCTGGTTCGTAAAAATGTGGCTAGGAATAATTTACCCCCAACAATGGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

494

Amino Acids

55.78

Weight (kDa)

6.82

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 301 - 435 3.2e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 253, 381
AciI CCGC 5 cut(s) 30, 717, 775, 805, 1078
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 2 cut(s) 609, 735
AfiI CCNNNNNNNGG 2 cut(s) 1471, 1472
AgsI TTSAA 8 cut(s) 187, 839, 844, 986, 1094, 1336, 1364, 1385
AjnI CCWGG 5 cut(s) 103, 555, 617, 1234, 1428
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 6 cut(s) 365, 461, 553, 979, 1367, 1381
AluI AGCT 6 cut(s) 365, 461, 553, 979, 1367, 1381
Alw21I GWGCWC 4 cut(s) 223, 555, 1040, 1112
Alw26I GTCTC 1 cut(s) 1412
AoxI GGCC 5 cut(s) 127, 368, 662, 1075, 1180
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 274
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 966
AspS9I GGNCC 3 cut(s) 127, 517, 662
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 564
BanI GGYRCC 2 cut(s) 253, 381
BanII GRGCYC 1 cut(s) 555
BauI CACGAG 1 cut(s) 1409
Bbv12I GWGCWC 4 cut(s) 223, 555, 1040, 1112
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 221, 780, 1202, 1220
BciT130I CCWGG 5 cut(s) 105, 557, 619, 1236, 1430
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 1412
BfaI CTAG 6 cut(s) 192, 270, 738, 771, 1368, 1449
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 4 cut(s) 31, 363, 775, 1078
BlsI GCNGC 4 cut(s) 32, 364, 776, 1079
Bme1390I CCNGG 6 cut(s) 43, 105, 557, 619, 1236, 1430
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 3 cut(s) 127, 517, 662
BmiI GGNNCC 4 cut(s) 255, 383, 422, 519
BmrFI CCNGG 6 cut(s) 43, 105, 557, 619, 1236, 1430
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 3 cut(s) 295, 403, 699
BmuI ACTGGG 1 cut(s) 515
BpmI CTGGAG 2 cut(s) 741, 1257
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 3 cut(s) 556, 1327, 1428
Bsc4I CCNNNNNNNGG 2 cut(s) 1471, 1472
Bse1I ACTGG 3 cut(s) 440, 521, 1207
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 5 cut(s) 105, 557, 619, 1236, 1430
BseDI CCNNGG 3 cut(s) 556, 1327, 1428
BseGI GGATG 2 cut(s) 442, 501
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 1471, 1472
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 3 cut(s) 440, 521, 1207
BseRI GAGGAG 1 cut(s) 1070
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 374
BshFI GGCC 5 cut(s) 129, 370, 664, 1077, 1182
BshNI GGYRCC 2 cut(s) 253, 381
BsiHKAI GWGCWC 4 cut(s) 223, 555, 1040, 1112
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 193, 503
BslI CCNNNNNNNGG 2 cut(s) 1471, 1472
BsmAI GTCTC 1 cut(s) 1412
BsmFI GGGAC 2 cut(s) 193, 503
BsmI GAATGC 1 cut(s) 1236
BsnI GGCC 5 cut(s) 129, 370, 664, 1077, 1182
Bsp1286I GDGCHC 5 cut(s) 223, 555, 564, 1040, 1112
BspACI CCGC 5 cut(s) 30, 717, 775, 805, 1078
BspANI GGCC 5 cut(s) 129, 370, 664, 1077, 1182
BspCNI CTCAG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 255, 383, 422, 519
BspMI ACCTGC 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 253, 381
BsrI ACTGG 3 cut(s) 440, 521, 1207
BssECI CCNNGG 3 cut(s) 556, 1327, 1428
BssSI CACGAG 1 cut(s) 1409
BssT1I CCWWGG 1 cut(s) 1327
Bst2BI CACGAG 1 cut(s) 1409
Bst2UI CCWGG 5 cut(s) 105, 557, 619, 1236, 1430
Bst4CI ACNGT 8 cut(s) 295, 315, 349, 451, 646, 745, 1090, 1114
Bst6I CTCTTC 3 cut(s) 864, 957, 1289
BstAPI GCANNNNNTGC 2 cut(s) 1247, 1256
BstC8I GCNNGC 2 cut(s) 300, 624
BstDEI CTNAG 3 cut(s) 358, 406, 1142
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 2 cut(s) 442, 501
BstMAI GTCTC 1 cut(s) 1412
BstMWI GCNNNNNNNGC 4 cut(s) 359, 559, 1247, 1256
BstNI CCWGG 5 cut(s) 105, 557, 619, 1236, 1430
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 6 cut(s) 41, 103, 555, 617, 1234, 1428
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuRI GGCC 5 cut(s) 129, 370, 664, 1077, 1182
BtsCI GGATG 2 cut(s) 442, 501
BtsIMutI CAGTG 5 cut(s) 345, 433, 750, 1110, 1200
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 300, 624
CciI TCATGA 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 127, 517, 662
Csp6I GTAC 2 cut(s) 608, 734
CviQI GTAC 2 cut(s) 608, 734
DdeI CTNAG 3 cut(s) 358, 406, 1142
EaeI YGGCCR 1 cut(s) 1075
Eam1104I CTCTTC 3 cut(s) 864, 957, 1289
EarI CTCTTC 3 cut(s) 864, 957, 1289
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 1327
Eco24I GRGCYC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 553
EcoO109I RGGNCCY 3 cut(s) 127, 517, 662
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 5 cut(s) 103, 555, 617, 1234, 1428
EcoT14I CCWWGG 1 cut(s) 1327
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 1327
FaqI GGGAC 2 cut(s) 193, 503
Fnu4HI GCNGC 4 cut(s) 31, 363, 775, 1078
FokI GGATG 2 cut(s) 429, 508
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 4 cut(s) 31, 363, 775, 1078
FspBI CTAG 6 cut(s) 192, 270, 738, 771, 1368, 1449
GluI GCNGC 4 cut(s) 31, 363, 775, 1078
GsuI CTGGAG 2 cut(s) 741, 1257
HaeIII GGCC 5 cut(s) 129, 370, 664, 1077, 1182
HapII CCGG 1 cut(s) 42
HinfI GANTC 5 cut(s) 967, 1215, 1296, 1311, 1420
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 7 cut(s) 67, 280, 911, 935, 1351, 1378, 1398
Hpy188III TCNNGA 4 cut(s) 224, 983, 1094, 1385
HpyAV CCTTC 1 cut(s) 1270
HpyCH4III ACNGT 8 cut(s) 295, 315, 349, 451, 646, 745, 1090, 1114
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 559, 1247, 1256
HpyF3I CTNAG 3 cut(s) 358, 406, 1142
HpySE526I ACGT 1 cut(s) 342
LmnI GCTCC 6 cut(s) 45, 426, 558, 1057, 1238, 1378
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 3 cut(s) 295, 403, 699
MaeI CTAG 6 cut(s) 192, 270, 738, 771, 1368, 1449
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 6 cut(s) 343, 398, 488, 640, 945, 1147
MboII GAAGA 6 cut(s) 70, 344, 803, 881, 974, 1276
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 5 cut(s) 223, 555, 564, 1040, 1112
MluCI AATT 7 cut(s) 79, 258, 274, 839, 891, 1188, 1456
MlyI GAGTC 2 cut(s) 1305, 1414
MmeI TCCRAC 2 cut(s) 999, 1356
MnlI CCTC 9 cut(s) 118, 155, 415, 508, 697, 716, 989, 1048, 1405
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 2 cut(s) 153, 464
MspA1I CMGCKG 2 cut(s) 30, 719
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 6 cut(s) 43, 105, 557, 619, 1236, 1430
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 1236
MvaI CCWGG 5 cut(s) 105, 557, 619, 1236, 1430
MwoI GCNNNNNNNGC 4 cut(s) 359, 559, 1247, 1256
NciI CCSGG 1 cut(s) 43
NlaIV GGNNCC 4 cut(s) 255, 383, 422, 519
NmeAIII GCCGAG 2 cut(s) 346, 1293
NmuCI GTSAC 5 cut(s) 343, 398, 488, 945, 1147
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 1236
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 3 cut(s) 967, 1215, 1296
PflFI GACNNNGTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 32, 364, 776, 1079
PleI GAGTC 2 cut(s) 1305, 1414
PpsI GAGTC 2 cut(s) 1305, 1414
PpuMI RGGWCCY 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 5 cut(s) 103, 555, 617, 1234, 1428
PspEI GGTNACC 1 cut(s) 398
PspGI CCWGG 5 cut(s) 103, 555, 617, 1234, 1428
PspN4I GGNNCC 4 cut(s) 255, 383, 422, 519
PspPI GGNCC 3 cut(s) 127, 517, 662
PspPPI RGGWCCY 1 cut(s) 517
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 2 cut(s) 609, 735
RsaNI GTAC 2 cut(s) 608, 734
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 153, 464
SatI GCNGC 4 cut(s) 31, 363, 775, 1078
Sau96I GGNCC 3 cut(s) 127, 517, 662
SchI GAGTC 2 cut(s) 1305, 1414
ScrFI CCNGG 6 cut(s) 43, 105, 557, 619, 1236, 1430
SduI GDGCHC 5 cut(s) 223, 555, 564, 1040, 1112
SfaNI GCATC 3 cut(s) 295, 403, 699
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 517
Sse9I AATT 7 cut(s) 79, 258, 274, 839, 891, 1188, 1456
SsiI CCGC 5 cut(s) 30, 717, 775, 805, 1078
SspI AATATT 1 cut(s) 157
SspMI CTAG 6 cut(s) 192, 270, 738, 771, 1368, 1449
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 6 cut(s) 41, 103, 555, 617, 1234, 1428
StyI CCWWGG 1 cut(s) 1327
TaaI ACNGT 8 cut(s) 295, 315, 349, 451, 646, 745, 1090, 1114
TaiI ACGT 1 cut(s) 345
TaqI TCGA 4 cut(s) 160, 585, 784, 1309
TasI AATT 7 cut(s) 79, 258, 274, 839, 891, 1188, 1456
TatI WGTACW 1 cut(s) 607
TauI GCSGC 3 cut(s) 33, 777, 1080
TfiI GAWTC 3 cut(s) 967, 1215, 1296
Tru1I TTAA 2 cut(s) 153, 464
Tru9I TTAA 2 cut(s) 153, 464
TscAI CASTG 5 cut(s) 352, 440, 750, 1117, 1207
TseFI GTSAC 5 cut(s) 343, 398, 488, 945, 1147
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 5 cut(s) 343, 398, 488, 945, 1147
TspDTI ATGAA 9 cut(s) 126, 139, 345, 486, 512, 765, 866, 882, 941
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 5 cut(s) 352, 440, 750, 1117, 1207
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 517
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 6 cut(s) 192, 270, 738, 771, 1368, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.