MD16G1203400.v1.1

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0002432
Physical Location & Seq
Reverse (-)
18475873 .. 18479644
3772 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1203400.v1.1.491

Sequence Viewer

Length: 1365 bp
ATGGAAGATAGGAGCCAGCAATCAGGCCAAGTTCAGGATATGGAAAGGTTTGAGGGTGGTCATTGGGTTCCAATTGGGTGGGATAGGATTTCGGAAATTGTACAAACTGTGCAAGCTAACGCTAGTTGGGCCTCTCAGCAGTTTGGGATGGATGGTGAAGATGACTTCACTGTTGCAGATTTAGCAGCTCCGTATTGGGAGTGTCCGGCAGGGCCCATTTGGTGGTGCCATGTCTCTGCAGGCCACCCCACAGTTGAAGCATGGCTCAGCAATGCCCAGTGGCTTCACCCTGCAGTTAGCTTAGCTTTAAGAGATGAAAGTCGACTGATCAGTGACCGGATGAAGCACCTGCGATACGAGGTCCCAGTTAGGGTTGCCGGGGGGTTGCTATTTGAGCTTTTGGGACAGTCTATTGGGAATCCATTTGTTGATGAGGATGATATCCCCATTGTACTTAGATCGTGGCAAGCACAAAACTTCCTTGTAACGGTTTTGCATATTAAGGGGCCTGTGTCAAGTATAAATGTGTTGGGTATCACAGAAGTTCAGGAACTTGTTTCAACTGGAGGCTATAATGCACCGAGAACAGTGCATGAAGTCATAGCACATCTAGCTTGCCGCCTTACTCGATGGGATGACAGGTTATTCCGTAAGTCCATATTTGGAGCAGCTGATGAGGTTGAATTAAAATTTATGAACAGAAACCATGAGGATATGAATCTTTTCACTGTAATCCTCAACCAAGAAATCAGAAAGCTATCAAGACAGGTTATCAGAGTGAAGTGGTCGCTTCATGCAAGAGAAGAGATTGTATTCGAGCTTCTCCAACATTTGAGAGGAAATGCAGCAAGAACCTTGTTAGAGCAAATACGAAAGGCCACAAGAGAAATGATCGAGGAGCAAGAAGCAGTTCGCGGCCGCTTATTTACCATTCAGGACGTGATGCAGAGCACTGTTCGTGCATGGTTACAGGATCGAAGCCTTCGAGTGACACACAACCTGACTGTTTTTGGTGGCTGCGGCCTTGTCCTTTCCATCATCACCGGGCTATTTGGAATTAATGTTGACGGAATGCCGGGAGCACAGAACGCTCCATACGCATTCGGTGTATTTTCAGCCGTTCTCGCCTTTATAGGAGCCGTGCTAATCGGAGTAGGGCTGCTCTACCTTGGGCTGAAACAACCGGTCACCGAAGAGCAGGTTGAAGTTAGAAAGTTGGAGCTTCAAGAGTTGGTTAAGATGTTTCAGCACGAGGCTGAGAATCATGAAGTGGTTCGCAAAGATGTGTCTCGCAGTAACCTCTCCCCTACGGCCGGCGACGGTTTCATACGTGATGCAGATTATGTTGTGATTCAAGGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

455

Amino Acids

51.13

Weight (kDa)

5.5

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 248 - 382 5.6e-12 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
Acc36I ACCTGC 2 cut(s) 357, 1189
AccB1I GGYRCC 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 222
AccI GTMKAC 1 cut(s) 322
AccII CGCG 1 cut(s) 915
AciI CCGC 4 cut(s) 619, 915, 919, 1020
AclWI GGATC 1 cut(s) 981
AcoI YGGCCR 2 cut(s) 916, 1311
AcsI RAATTY 1 cut(s) 689
AfaI GTAC 2 cut(s) 102, 453
AfiI CCNNNNNNNGG 5 cut(s) 34, 222, 370, 487, 1313
AgeI ACCGGT 1 cut(s) 1183
AgsI TTSAA 6 cut(s) 257, 561, 683, 1205, 1226, 1355
AjiI CACGTC 1 cut(s) 940
Alw21I GWGCWC 2 cut(s) 953, 1084
Alw26I GTCTC 2 cut(s) 238, 1293
AlwI GGATC 1 cut(s) 981
AoxI GGCC 9 cut(s) 25, 129, 212, 241, 506, 876, 916, 1021, 1311
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 5 cut(s) 185, 668, 845, 1017, 1159
ApoI RAATTY 1 cut(s) 689
AseI ATTAAT 1 cut(s) 1059
AsiGI ACCGGT 1 cut(s) 1183
Asp700I GAANNNNTTC 3 cut(s) 722, 909, 1272
AspS9I GGNCC 5 cut(s) 129, 212, 213, 361, 506
AsuC2I CCSGG 3 cut(s) 379, 1045, 1077
AsuHPI GGTGA 4 cut(s) 167, 278, 1033, 1180
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
BauI CACGAG 1 cut(s) 1250
Bbv12I GWGCWC 2 cut(s) 953, 1084
BbvI GCAGC 5 cut(s) 197, 680, 857, 1004, 1146
BccI CCATC 4 cut(s) 142, 146, 624, 1043
BceAI ACGGC 3 cut(s) 1103, 1124, 1326
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BclI TGATCA 1 cut(s) 327
BcnI CCSGG 3 cut(s) 379, 1045, 1077
BcoDI GTCTC 2 cut(s) 238, 1293
BfaI CTAG 2 cut(s) 123, 611
BfmI CTRYAG 2 cut(s) 237, 291
BfuAI ACCTGC 2 cut(s) 357, 1189
BisI GCNGC 9 cut(s) 186, 619, 669, 846, 916, 919, 1018, 1021, 1160
BlpI GCTNAGC 2 cut(s) 266, 301
BlsI GCNGC 9 cut(s) 187, 620, 670, 847, 917, 920, 1019, 1022, 1161
Bme1390I CCNGG 3 cut(s) 379, 1045, 1077
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 5 cut(s) 129, 212, 213, 361, 506
BmiI GGNNCC 7 cut(s) 14, 69, 214, 227, 363, 507, 1138
BmrFI CCNGG 3 cut(s) 379, 1045, 1077
BmrI ACTGGG 2 cut(s) 271, 359
BmsI GCATC 2 cut(s) 933, 1324
BmuI ACTGGG 2 cut(s) 271, 359
BpmI CTGGAG 1 cut(s) 585
Bpu1102I GCTNAGC 2 cut(s) 266, 301
BpuMI CCSGG 3 cut(s) 379, 1045, 1077
BsaAI YACGTR 1 cut(s) 1331
BsaBI GATNNNNATC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 378, 1168
BsaWI WCCGGW 2 cut(s) 336, 1183
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 222, 370, 487, 1313
Bse118I RCCGGY 2 cut(s) 1183, 1313
Bse1I ACTGG 3 cut(s) 277, 365, 568
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 717
BseDI CCNNGG 2 cut(s) 378, 1168
BseGI GGATG 5 cut(s) 153, 157, 345, 442, 640
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 5 cut(s) 34, 222, 370, 487, 1313
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 3 cut(s) 149, 280, 1248
BseNI ACTGG 3 cut(s) 277, 365, 568
BseRI GAGGAG 1 cut(s) 911
BseSI GKGCMC 1 cut(s) 216
BseX3I CGGCCG 2 cut(s) 916, 1311
BseXI GCAGC 5 cut(s) 197, 680, 857, 1004, 1146
Bsh1236I CGCG 1 cut(s) 915
Bsh1285I CGRYCG 2 cut(s) 919, 1314
BshFI GGCC 9 cut(s) 27, 131, 214, 243, 508, 878, 918, 1023, 1313
BshNI GGYRCC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 1183
BsiEI CGRYCG 2 cut(s) 919, 1314
BsiHKAI GWGCWC 2 cut(s) 953, 1084
BsiSI CCGG 7 cut(s) 206, 337, 378, 1044, 1076, 1184, 1314
BslFI GGGAC 2 cut(s) 347, 417
BslI CCNNNNNNNGG 5 cut(s) 34, 222, 370, 487, 1313
BsmAI GTCTC 2 cut(s) 238, 1293
BsmFI GGGAC 2 cut(s) 347, 417
BsmI GAATGC 2 cut(s) 1077, 1100
BsnI GGCC 9 cut(s) 27, 131, 214, 243, 508, 878, 918, 1023, 1313
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 216, 953, 1084
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 4 cut(s) 327, 458, 891, 973
Bsp1720I GCTNAGC 2 cut(s) 266, 301
BspACI CCGC 4 cut(s) 619, 915, 919, 1020
BspANI GGCC 9 cut(s) 27, 131, 214, 243, 508, 878, 918, 1023, 1313
BspCNI CTCAG 3 cut(s) 148, 279, 1249
BspFNI CGCG 1 cut(s) 915
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 7 cut(s) 14, 69, 214, 227, 363, 507, 1138
BspMAI CTGCAG 2 cut(s) 241, 295
BspMI ACCTGC 2 cut(s) 357, 1189
BspPI GGATC 1 cut(s) 981
BspQI GCTCTTC 1 cut(s) 1188
BspT107I GGYRCC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 1183, 1313
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 3 cut(s) 277, 365, 568
BssAI RCCGGY 2 cut(s) 1183, 1313
BssECI CCNNGG 2 cut(s) 378, 1168
BssMI GATC 4 cut(s) 327, 458, 891, 973
BssSI CACGAG 1 cut(s) 1250
BssT1I CCWWGG 1 cut(s) 1168
Bst2BI CACGAG 1 cut(s) 1250
Bst6I CTCTTC 2 cut(s) 798, 1188
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 1331
BstC8I GCNNGC 6 cut(s) 17, 114, 241, 468, 616, 1315
BstDEI CTNAG 5 cut(s) 135, 266, 301, 455, 1257
BstEII GGTNACC 1 cut(s) 1186
BstF5I GGATG 5 cut(s) 153, 157, 345, 442, 640
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 4 cut(s) 330, 461, 894, 976
BstMAI GTCTC 2 cut(s) 238, 1293
BstMBI GATC 4 cut(s) 327, 458, 891, 973
BstMCI CGRYCG 2 cut(s) 919, 1314
BstMWI GCNNNNNNNGC 7 cut(s) 128, 182, 394, 611, 1088, 1097, 1124
BstPI GGTNACC 1 cut(s) 1186
BstSCI CCNGG 3 cut(s) 377, 1043, 1075
BstSFI CTRYAG 2 cut(s) 237, 291
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 5 cut(s) 197, 680, 857, 1004, 1146
BstXI CCANNNNNNTGG 1 cut(s) 78
BstZI CGGCCG 2 cut(s) 916, 1311
BsuRI GGCC 9 cut(s) 27, 131, 214, 243, 508, 878, 918, 1023, 1313
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 5 cut(s) 153, 157, 345, 442, 640
BtsIMutI CAGTG 6 cut(s) 168, 284, 337, 594, 726, 951
BveI ACCTGC 2 cut(s) 357, 1189
Cac8I GCNNGC 6 cut(s) 17, 114, 241, 468, 616, 1315
CciI TCATGA 1 cut(s) 1264
CciNI GCGGCCGC 1 cut(s) 916
Cfr10I RCCGGY 2 cut(s) 1183, 1313
Cfr13I GGNCC 5 cut(s) 129, 212, 213, 361, 506
Csp6I GTAC 2 cut(s) 101, 452
CspAI ACCGGT 1 cut(s) 1183
CviAII CATG 7 cut(s) 230, 261, 593, 707, 794, 963, 1265
CviQI GTAC 2 cut(s) 101, 452
DdeI CTNAG 5 cut(s) 135, 266, 301, 455, 1257
DpnI GATC 4 cut(s) 329, 460, 893, 975
DpnII GATC 4 cut(s) 327, 458, 891, 973
EaeI YGGCCR 2 cut(s) 916, 1311
EagI CGGCCG 2 cut(s) 916, 1311
Eam1104I CTCTTC 2 cut(s) 798, 1188
EarI CTCTTC 2 cut(s) 798, 1188
EclXI CGGCCG 2 cut(s) 916, 1311
Eco130I CCWWGG 1 cut(s) 1168
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 2 cut(s) 916, 1311
Eco91I GGTNACC 1 cut(s) 1186
EcoO109I RGGNCCY 3 cut(s) 212, 361, 506
EcoO65I GGTNACC 1 cut(s) 1186
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 1168
FaeI CATG 7 cut(s) 233, 264, 596, 710, 797, 966, 1268
FaqI GGGAC 2 cut(s) 347, 417
FatI CATG 7 cut(s) 229, 260, 592, 706, 793, 962, 1264
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 9 cut(s) 186, 619, 669, 846, 916, 919, 1018, 1021, 1160
FokI GGATG 5 cut(s) 160, 164, 352, 449, 647
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 9 cut(s) 186, 619, 669, 846, 916, 919, 1018, 1021, 1160
FspBI CTAG 2 cut(s) 123, 611
GluI GCNGC 9 cut(s) 186, 619, 669, 846, 916, 919, 1018, 1021, 1160
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 9 cut(s) 27, 131, 214, 243, 508, 878, 918, 1023, 1313
HapII CCGG 7 cut(s) 206, 337, 378, 1044, 1076, 1184, 1314
Hin1II CATG 7 cut(s) 233, 264, 596, 710, 797, 966, 1268
HincII GTYRAC 2 cut(s) 323, 1066
HindII GTYRAC 2 cut(s) 323, 1066
HinfI GANTC 4 cut(s) 418, 718, 1261, 1351
HpaII CCGG 7 cut(s) 206, 337, 378, 1044, 1076, 1184, 1314
HphI GGTGA 4 cut(s) 167, 278, 1033, 1180
Hpy166II GTNNAC 2 cut(s) 323, 1066
Hpy188I TCNGA 4 cut(s) 94, 752, 776, 1151
Hpy188III TCNNGA 6 cut(s) 35, 548, 762, 935, 1226, 1265
Hpy8I GTNNAC 2 cut(s) 323, 1066
Hpy99I CGWCG 1 cut(s) 1322
HpyAV CCTTC 1 cut(s) 992
HpyCH4IV ACGT 2 cut(s) 939, 1330
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 182, 394, 611, 1088, 1097, 1124
HpyF3I CTNAG 5 cut(s) 135, 266, 301, 455, 1257
HpySE526I ACGT 2 cut(s) 939, 1330
Hsp92II CATG 7 cut(s) 233, 264, 596, 710, 797, 966, 1268
KroI GCCGGC 1 cut(s) 1313
KroNI GCCGGC 1 cut(s) 1315
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 4 cut(s) 327, 458, 891, 973
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 8 cut(s) 12, 193, 665, 898, 1079, 1096, 1136, 1219
Lsp1109I GCAGC 5 cut(s) 197, 680, 857, 1004, 1146
LweI GCATC 2 cut(s) 933, 1324
MaeI CTAG 2 cut(s) 123, 611
MaeII ACGT 2 cut(s) 939, 1330
MaeIII GTNAC 6 cut(s) 332, 484, 966, 988, 1186, 1295
MalI GATC 4 cut(s) 329, 460, 893, 975
MboI GATC 4 cut(s) 327, 458, 891, 973
MboII GAAGA 4 cut(s) 17, 170, 815, 1205
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 3 cut(s) 216, 953, 1084
MluCI AATT 5 cut(s) 72, 96, 683, 689, 1056
MmeI TCCRAC 2 cut(s) 850, 1197
MroNI GCCGGC 1 cut(s) 1313
MroXI GAANNNNTTC 3 cut(s) 722, 909, 1272
MseI TTAA 5 cut(s) 308, 501, 686, 1059, 1236
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 7 cut(s) 206, 337, 378, 1044, 1076, 1184, 1314
MspR9I CCNGG 3 cut(s) 379, 1045, 1077
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 2 cut(s) 1077, 1100
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 7 cut(s) 128, 182, 394, 611, 1088, 1097, 1124
NaeI GCCGGC 1 cut(s) 1315
NciI CCSGG 3 cut(s) 379, 1045, 1077
NdeII GATC 4 cut(s) 327, 458, 891, 973
NgoMIV GCCGGC 1 cut(s) 1313
NlaIII CATG 7 cut(s) 233, 264, 596, 710, 797, 966, 1268
NlaIV GGNNCC 7 cut(s) 14, 69, 214, 227, 363, 507, 1138
NmuCI GTSAC 3 cut(s) 332, 988, 1186
NotI GCGGCCGC 1 cut(s) 916
PagI TCATGA 1 cut(s) 1264
PaqCI CACCTGC 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 982
PctI GAATGC 2 cut(s) 1077, 1100
PdiI GCCGGC 1 cut(s) 1315
PdmI GAANNNNTTC 3 cut(s) 722, 909, 1272
PfeI GAWTC 4 cut(s) 418, 718, 1261, 1351
PflMI CCANNNNNTGG 1 cut(s) 222
PinAI ACCGGT 1 cut(s) 1183
PkrI GCNGC 9 cut(s) 187, 620, 670, 847, 917, 920, 1019, 1022, 1161
Ppu21I YACGTR 1 cut(s) 1331
PpuMI RGGWCCY 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 361
PspEI GGTNACC 1 cut(s) 1186
PspN4I GGNNCC 7 cut(s) 14, 69, 214, 227, 363, 507, 1138
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 5 cut(s) 129, 212, 213, 361, 506
PspPPI RGGWCCY 1 cut(s) 361
PsrI GAACNNNNNNTAC 2 cut(s) 1079, 1111
PstI CTGCAG 2 cut(s) 241, 295
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 102, 453
RsaNI GTAC 2 cut(s) 101, 452
SalI GTCGAC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 5 cut(s) 308, 501, 686, 1059, 1236
SatI GCNGC 9 cut(s) 186, 619, 669, 846, 916, 919, 1018, 1021, 1160
Sau3AI GATC 4 cut(s) 327, 458, 891, 973
Sau96I GGNCC 5 cut(s) 129, 212, 213, 361, 506
ScrFI CCNGG 3 cut(s) 379, 1045, 1077
SduI GDGCHC 3 cut(s) 216, 953, 1084
SfaNI GCATC 2 cut(s) 933, 1324
SfcI CTRYAG 2 cut(s) 237, 291
SinI GGWCC 1 cut(s) 361
Sse9I AATT 5 cut(s) 72, 96, 683, 689, 1056
SsiI CCGC 4 cut(s) 619, 915, 919, 1020
SspMI CTAG 2 cut(s) 123, 611
StyD4I CCNGG 3 cut(s) 377, 1043, 1075
StyI CCWWGG 1 cut(s) 1168
TaiI ACGT 2 cut(s) 942, 1333
TaqI TCGA 6 cut(s) 322, 628, 816, 894, 976, 985
TasI AATT 5 cut(s) 72, 96, 683, 689, 1056
TatI WGTACW 2 cut(s) 100, 451
TauI GCSGC 4 cut(s) 621, 918, 921, 1023
TfiI GAWTC 4 cut(s) 418, 718, 1261, 1351
Tru1I TTAA 5 cut(s) 308, 501, 686, 1059, 1236
Tru9I TTAA 5 cut(s) 308, 501, 686, 1059, 1236
TscAI CASTG 6 cut(s) 175, 284, 337, 594, 733, 958
TseFI GTSAC 3 cut(s) 332, 988, 1186
TseI GCWGC 5 cut(s) 185, 668, 845, 1017, 1159
Tsp45I GTSAC 3 cut(s) 332, 988, 1186
TspDTI ATGAA 8 cut(s) 330, 356, 609, 710, 731, 782, 1281, 1315
TspGWI ACGGA 3 cut(s) 180, 638, 1083
TspRI CASTG 6 cut(s) 175, 284, 337, 594, 733, 958
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 361
VspI ATTAAT 1 cut(s) 1059
XapI RAATTY 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 3 cut(s) 722, 909, 1272
XspI CTAG 2 cut(s) 123, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.