Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002432

Physical Location & Seq

Genomic Coordinates Forward (+)

54241274 .. 54241888

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAGACAGCAACAAGTACTGTTCCGGCGGCTCTTGTTCCGGGAGCAATATGACGAAGAAATCAGATAGTCATAAGAATTGTTTGAGTAAATATGTCATGCCTGGAAGTGAACTTTGGACAGAGGGCCTTATCTGTGCTTTTGAGTTCATTCAAGGACGAAACAAACCAAGCAGTTTGAAATCTGGTGATAGGAACAAGTCCCGAAGTGGTGCTCATGATGGTGAAAGAGATGGTGGTCTTTGGGTGCCAATTGGGTGGGCTAGAATTTCAGAAATCGTCCAAACTGTGCAAGCTGATGCACAACAGTTTGGCATCGATGATGAAGATGACTACTTCACTGTTGCAGACTTAGCAGCTCGGCCTGTTTGGTGGTGCCATGTCCTTGCAGGTCACCCCTCAGTTGATGCTTGGCTCCGTAATGCCCACTGGCTACATCCTGCTGTCAGTTTAGCTTTAACAGATGAAAATCTACTGATTAGTGACAAGATGAAACACCTTTTGTATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAGCTCTTGGGGCACTCATTCGGTGTTCCATTTGTCGACGAGAATGATATTCCCATTGTACTTCGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

204

Amino Acids

22.57

Weight (kDa)

5.42

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29820 AT1G29820 AT1G29830 AT1G29830 AT1G29830
fragaria_vesca	FvH4_1g24850 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290 FvH4_3g06290
malus_domestica	MD05G1290900.v1.1 MD10G1266700.v1.1 MD16G1203400.v1.1
prunus_persica	Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1 Prupe.4G074800_v2.0.a1
pyrus_communis	pycom05g26740
rosa_chinensis	RchiOBHm_Chr5g0013021
rosa_laevigata	RLG00000018679
rosa_multiflora	Rmu_sc0003892.1_g000020 Rmu_sc0037731.1_g000004
rosa_roxburghii	Rroxscaffold_1G00063550 Rroxscaffold_2G00121600 Rroxscaffold_2G00121610
rosa_rugosa	Rorug02G0238900 Rorug05G0006200 Rorug05G0006300 Rorug05G0088100
rosa_samantha	Rh2AG297500 Rh2DG321200 Rh5AG100800 Rh5BG097200 Rh5CG109400 Rh5DG096100
rosa_wichuraiana	Rw2G023670 Rw5G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	247, 375
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	2 cut(s)	20, 603
AgsI	TTSAA	2 cut(s)	155, 181
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	296, 359, 455, 547
AluI	AGCT	4 cut(s)	296, 359, 455, 547
Alw21I	GWGCWC	2 cut(s)	217, 549
AoxI	GGCC	2 cut(s)	127, 362
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	127, 511
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	200, 236, 386
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	558
BanI	GGYRCC	2 cut(s)	247, 375
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	217, 549
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	2 cut(s)	215, 227
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	264, 613
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	31, 357
BlsI	GCNGC	2 cut(s)	32, 358
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	43, 105
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	127, 511
BmiI	GGNNCC	4 cut(s)	249, 377, 416, 513
BmrFI	CCNGG	2 cut(s)	43, 105
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	3 cut(s)	289, 324, 397
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	468
Bse1I	ACTGG	2 cut(s)	434, 515
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	434, 515
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	368
BshFI	GGCC	2 cut(s)	129, 364
BshNI	GGYRCC	2 cut(s)	247, 375
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	217, 549
BsiSI	CCGG	2 cut(s)	27, 42
BslFI	GGGAC	2 cut(s)	187, 497
BsmFI	GGGAC	2 cut(s)	187, 497
BsnI	GGCC	2 cut(s)	129, 364
Bsp1286I	GDGCHC	3 cut(s)	217, 549, 558
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	129, 364
BspCNI	CTCAG	1 cut(s)	413
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	4 cut(s)	249, 377, 416, 513
BspMI	ACCTGC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	247, 375
BsrI	ACTGG	2 cut(s)	434, 515
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	23, 289, 309, 343
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	352, 400
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 553
BstNI	CCWGG	1 cut(s)	105
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	41, 103
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	129, 364
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	339, 427
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	127, 511
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	19, 602
CviAII	CATG	3 cut(s)	100, 218, 380
CviQI	GTAC	2 cut(s)	19, 602
DdeI	CTNAG	2 cut(s)	352, 400
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	2 cut(s)	127, 511
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	3 cut(s)	103, 221, 383
FaiI	YATR	7 cut(s)	53, 75, 96, 101, 219, 381, 507
FaqI	GGGAC	2 cut(s)	187, 497
FatI	CATG	3 cut(s)	99, 217, 379
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	31, 357
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	2 cut(s)	31, 357
FspBI	CTAG	2 cut(s)	264, 613
GluI	GCNGC	2 cut(s)	31, 357
HaeIII	GGCC	2 cut(s)	129, 364
HapII	CCGG	2 cut(s)	27, 42
Hin1II	CATG	3 cut(s)	103, 221, 383
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HpaII	CCGG	2 cut(s)	27, 42
HphI	GGTGA	3 cut(s)	200, 236, 386
Hpy166II	GTNNAC	2 cut(s)	113, 580
Hpy188I	TCNGA	2 cut(s)	67, 274
Hpy188III	TCNNGA	2 cut(s)	204, 218
Hpy8I	GTNNAC	2 cut(s)	113, 580
Hpy99I	CGWCG	1 cut(s)	584
HpyCH4III	ACNGT	4 cut(s)	23, 289, 309, 343
HpyCH4V	TGCA	4 cut(s)	292, 302, 347, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 553
HpyF3I	CTNAG	2 cut(s)	352, 400
Hsp92II	CATG	3 cut(s)	103, 221, 383
LmnI	GCTCC	2 cut(s)	45, 420
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	3 cut(s)	289, 324, 397
MaeI	CTAG	2 cut(s)	264, 613
MaeIII	GTNAC	2 cut(s)	392, 482
MboII	GAAGA	3 cut(s)	17, 70, 338
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	217, 549, 558
MluCI	AATT	3 cut(s)	79, 252, 267
MnlI	CCTC	3 cut(s)	118, 409, 502
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	27, 42
MspR9I	CCNGG	2 cut(s)	43, 105
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	353, 553
NciI	CCSGG	1 cut(s)	43
NlaIII	CATG	3 cut(s)	103, 221, 383
NlaIV	GGNNCC	4 cut(s)	249, 377, 416, 513
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	392, 482
PagI	TCATGA	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	32, 358
PpuMI	RGGWCCY	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	4 cut(s)	249, 377, 416, 513
PspPI	GGNCC	2 cut(s)	127, 511
PspPPI	RGGWCCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	20, 603
RsaNI	GTAC	2 cut(s)	19, 602
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	31, 357
Sau96I	GGNCC	2 cut(s)	127, 511
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	43, 105
SduI	GDGCHC	3 cut(s)	217, 549, 558
SetI	ASST	7 cut(s)	298, 361, 394, 457, 501, 513, 549
SfaNI	GCATC	3 cut(s)	289, 324, 397
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	79, 252, 267
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	264, 613
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	41, 103
TaaI	ACNGT	4 cut(s)	23, 289, 309, 343
TaqI	TCGA	2 cut(s)	318, 579
TasI	AATT	3 cut(s)	79, 252, 267
TatI	WGTACW	2 cut(s)	18, 601
TauI	GCSGC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	346, 434
TseFI	GTSAC	2 cut(s)	392, 482
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	2 cut(s)	392, 482
TspDTI	ATGAA	4 cut(s)	139, 339, 480, 506
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	346, 434
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	2 cut(s)	264, 613
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.